mRNA_H-paniculata_contig20450.5300.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20450.5300.1
Unique NamemRNA_H-paniculata_contig20450.5300.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20450.5300.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.530e-24
Identity = 70/151 (46.36%), Postives = 84/151 (55.63%), Query Frame = 3 
Query:    6 YGYVQFEEPGAVEMALVLDGMQVCGGTVKVSHSIHPAVISTPPAPTTTISSTIEGSGGRPST-VQGKNR-PDDWDCVNPDCENRCYGFRVKCNRCGTGKDGTPPPAAGGGQANAGVAPVSAPVSAHRPRLQLGS-ITPRGLRRGIGTNLSA 449
            YG VQFEE  AVE AL LDG  +CGGT +++ S HPAV++ P                       GK R  +DWDC +PDC+N C+ FR KCNRCG GKDGTPPP     +        S   + HRPRLQLG+ I PR LR    TN +A
Sbjct:  892 YGLVQFEEGEAVEKALALDGTSMCGGTAQITRSRHPAVVAAPXXXXXXXXXXXXXXXXXXXXXADGKGRRANDWDCPSPDCDNVCFSFRTKCNRCGMGKDGTPPPK----ELQXXXXXNSVVATQHRPRLQLGAAIRPRALRNERSTNGAA 1038
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20450.5300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJP0_ECTSI4.530e-2446.36Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20450contigH-paniculata_contig20450:1155..3793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue2.3e-19
Seed eggNOG ortholog2880.D8LJP0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of histone deubiquitination
EggNOG OGsKOG0128@1,KOG0128@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1515
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20450.5300.1prot_H-paniculata_contig20450.5300.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20450 2056..3749 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.0051684-UTR-H-paniculata_contig20450:1154..20551622929532.0051684-UTR-H-paniculata_contig20450:1154..2055Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20450 1155..2055 -
1691480901.427218-UTR-H-paniculata_contig20450:1154..20551691480901.427218-UTR-H-paniculata_contig20450:1154..2055Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20450 1155..2055 -
1622929532.047745-UTR-H-paniculata_contig20450:3749..37931622929532.047745-UTR-H-paniculata_contig20450:3749..3793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20450 3750..3793 -
1691480901.4646978-UTR-H-paniculata_contig20450:3749..37931691480901.4646978-UTR-H-paniculata_contig20450:3749..3793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20450 3750..3793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929532.0163836-CDS-H-paniculata_contig20450:2055..22721622929532.0163836-CDS-H-paniculata_contig20450:2055..2272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20450 2056..2272 -
1691480901.438084-CDS-H-paniculata_contig20450:2055..22721691480901.438084-CDS-H-paniculata_contig20450:2055..2272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20450 2056..2272 -
1622929532.0289552-CDS-H-paniculata_contig20450:2795..31181622929532.0289552-CDS-H-paniculata_contig20450:2795..3118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20450 2796..3118 -
1691480901.4471319-CDS-H-paniculata_contig20450:2795..31181691480901.4471319-CDS-H-paniculata_contig20450:2795..3118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20450 2796..3118 -
1622929532.038615-CDS-H-paniculata_contig20450:3719..37491622929532.038615-CDS-H-paniculata_contig20450:3719..3749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20450 3720..3749 -
1691480901.4559863-CDS-H-paniculata_contig20450:3719..37491691480901.4559863-CDS-H-paniculata_contig20450:3719..3749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20450 3720..3749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20450.5300.1

>prot_H-paniculata_contig20450.5300.1 ID=prot_H-paniculata_contig20450.5300.1|Name=mRNA_H-paniculata_contig20450.5300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MALVLDGMQVCGGTVKVSHSIHPAVISTPPAPTTTISSTIEGSGGRPSTV
QGKNRPDDWDCVNPDCENRCYGFRVKCNRCGTGKDGTPPPAAGGGQANAG
VAPVSAPVSAHRPRLQLGSITPRGLRRGIGTNLSATNNDTSGGSGSGRNG
TARTSSNTGNNESMFPPSPVARPAGEMSNADFRAMLNKE*
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mRNA from alignment at H-paniculata_contig20450:1155..3793-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20450.5300.1 ID=mRNA_H-paniculata_contig20450.5300.1|Name=mRNA_H-paniculata_contig20450.5300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2639bp|location=Sequence derived from alignment at H-paniculata_contig20450:1155..3793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACTACGGATATGTGCAGTTCGAGGAGCCAGGCGCGGTGGAGATGGCT
CTGGTGCTAGATGGCATGCAAGTTGTGAGTGTGATGTGCGGCCGGGGAAA
TGAAGTAGCCAATGTATATGTATGTATATATATATATATATTATTGTTAT
TGTTATTGTTATTGTTATTGTTATTGTTATTGTTATTGTTATTGTTATTG
TTATTGTTATTGTTCATTTTTTTTTTCCTGGAAATCAGAGGAAATAATCT
TTGCTGATGATTATTTATAGTGGACAATGACGTCACAACGCATGTATGTT
TGAAATAAGACAAGATAAATACCATCCAGTTCACGCCTGATAAATCAGAA
TTACCAGTTAAGCTAGTGGTATTAACGAAACAGTACAAAATGCTGGATTC
ATTGTTGATCGGTATCACCTGTCAGCAAGATTCAGACCGGTTGATGTCGC
CGCCCAGCCCCCCCCCCCCCCTTCACTGACCCACCGACCACCACACCACC
ACACCAGCGATGTTTGTATCTTTCATAAATTGCTCGATATGGGCAACCCC
ATTATTTGATCGATCTGTCAATCTTGACTCTTGAATCTTTCACCAGTTCT
GCCTCATGTAGCACTGATCGTTTCACGTTTTCTTTTTCTTTTCGTATTTT
TATTACTATGATACTTTTTAAACAGTGCGGGGGCACGGTCAAGGTCTCCC
ACTCGATCCATCCGGCAGTAATTTCCACACCACCTGCACCCACCACCACC
ATTTCTAGTACTATCGAGGGGTCTGGAGGAAGACCAAGTACCGTACAGGG
CAAAAATCGCCCAGACGACTGGGATTGCGTAAACCCTGACTGTGAGAACA
GGTGCTACGGGTTCCGTGTAAAGTGCAATCGTTGCGGCACAGGGAAGGAT
GGTACACCGCCACCCGCGGCTGGGGGAGGGCAGGCGAACGCAGGGGTGGC
GCCCGTGTCGGCGCCTGTGTCGGCACACAGGCCTAGGCTGCAGCTTGGGT
GAGTTCTCCCATCTGGTGTGGGTGTCGCATGATGAAAAGGTATTCTCCTG
TTTTTGGTGGTGGTTAGCTTTGTTTGGTTGGCTTCTTGTTGCATTGCTTT
ACTTTGCTTTGTCTCGTCTCGTCTCGTCTCGTTTTTTGTTTGTTTTTTCT
TCCAAGAAGGCTCAAGCCCCCCCTCTCCTTATTGATGTACTTTTGCTAAT
AAATCCACATGATTGAATGTGAGGCCAGCTTGTTTATTTAACCCCAACAC
GGGTGTACTGTGGAGTTGTTATATGAGCTTCAGAGGTACGGTTTAGCTGA
CTATGACAGGGTTGATCTACCTACGAACAGATTTTTCTGAGGGCATGTGT
CATTCATGTTCACGTCGATACTATTTTATGTTTTTACCTACATACAGTAC
CATACGGTACACATGCGAGTGATGCACTGCAGCAACACTGCCCTGCCCCC
CCCTCCCCGCCGTTGCCCCCGCGCCCTCTTGTGTCTATATGTGCCGCGTC
ACTTTATCGTTCGAAAATCAGGTCCATTACGCCACGTGGGCTTAGACGTG
GCATTGGAACGAATTTGAGTGCTACCAATAATGACACTTCCGGTGGCAGC
GGGTCGGGCCGAAACGGTACTGCGAGAACCAGTTCAAATACCGGAAACAA
CGAGAGCATGTTCCCTCCTTCACCAGTGGCGCGTCCGGCAGGGGAGATGT
CCAACGCGGATTTCAGGGCAATGTTGAATAAGGAGTAGTAGACCGGAACA
CGAAAGACGTTACTTGAAATGTCGAAAAGCGGAGAGTTGGTGTTGAAAAT
ACCGTACCACTACTTTTGACGTGTGCAGGGTAGCATCATAGAACCAACGT
CATGGTGCGTACGTATGCATATGTGTGTGTTGGATGGCCGAATATATTTC
TATTAATTGCTGCAACAGACGCTGCTAGGTCCAGATCGATGTAAAACGTT
TAAGAAACGTTTGAAGATGTGACAAGTTAGACGGTTTTTATTTGAGTGTT
ATTTCGGGGTATGTTTCATGTGCTCGTCTTGTATTTCGTGTATTGGTTGT
ACCGTGTACGAGCGGTGGTCGGACATTCTTCAACGAAAGGGTATAATTTG
GCTTTTGGCTGTTTTTGGTTGCTTTGGGCGGGGTTAGAGTTTTTATGGCC
CGTTTTTGACGGGCGTATCGTAGACCCTGGACATCACAGGCCACAGTAGA
GGCCACAATTACGTCTTTGGACTAAGACTAAAGGTAGTTTTTTGCTGCCC
GACCCGGCCGACCCGGCGCCGTTTGAGAGTCATGGTAATAATCTCGATAG
ATTAAAGAACATTCAATATATCTCACTATTGATTGATTCCTTTGATCGCG
GCGTCCATATCCAAGTCGTGTGCACATGAAAGGCAGAGACATTTAAAAGA
ACATTGGAGTAGAGATGGTACGTACGGTCACTCTCCTGCCGTAAAGGTCC
CATCTTTCTCAGGAGCTGACGGTGGAAGATGACTATTTAGAATTGCTGGA
GTTACCACAGAAAAAGTATATTTGATGGGGACAAGTTCCCATTATTAGAG
CTGTACCTGCTGCATAGACATGAATACTTGCACACGTCGAACGAATAACG
ATCCATCAAAATCACTAACAAAAGAATTTGTCTTCGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig20450:1155..3793-

>mRNA_H-paniculata_contig20450.5300.1 ID=mRNA_H-paniculata_contig20450.5300.1|Name=mRNA_H-paniculata_contig20450.5300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig20450:1155..3793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCTGGTGCTAGATGGCATGCAAGTTATGGCTCTGGTGCTAGATGG
CATGCAAGTTTGCGGGGGCACGGTCAAGGTCTCCCACTCGATCCATCCGG
CAGTAATTTCCACACCACCTGCACCCACCACCACCATTTCTAGTACTATC
GAGGGGTCTGGAGGAAGACCAAGTACCGTACAGGGCAAAAATCGCCCAGA
CGACTGGGATTGCGTAAACCCTGACTGTGAGAACAGGTGCTACGGGTTCC
GTGTAAAGTGCAATCGTTGCGGCACAGGGAAGGATGGTACACCGCCACCC
GCGGCTGGGGGAGGGCAGGCGAACGCAGGGGTGGCGCCCGTGTCGGCGCC
TGTGTCGGCACACAGGCCTAGGCTGCAGCTTGGTGCGGGGGCACGGTCAA
GGTCTCCCACTCGATCCATCCGGCAGTAATTTCCACACCACCTGCACCCA
CCACCACCATTTCTAGTACTATCGAGGGGTCTGGAGGAAGACCAAGTACC
GTACAGGGCAAAAATCGCCCAGACGACTGGGATTGCGTAAACCCTGACTG
TGAGAACAGGTGCTACGGGTTCCGTGTAAAGTGCAATCGTTGCGGCACAG
GGAAGGATGGTACACCGCCACCCGCGGCTGGGGGAGGGCAGGCGAACGCA
GGGGTGGCGCCCGTGTCGGCGCCTGTGTCGGCACACAGGCCTAGGCTGCA
GCTTGGGTCCATTACGCCACGTGGGCTTAGACGTGGCATTGGAACGAATT
TGAGTGCTACCAATAATGACACTTCCGGTGGCAGCGGGTCGGGCCGAAAC
GGTACTGCGAGAACCAGTTCAAATACCGGAAACAACGAGAGCATGTTCCC
TCCTTCACCAGTGGCGCGTCCGGCAGGGGAGATGTCCAACGCGGATTTCA
GGGCAATGTTGAATAAGGAGTAGGTCCATTACGCCACGTGGGCTTAGACG
TGGCATTGGAACGAATTTGAGTGCTACCAATAATGACACTTCCGGTGGCA
GCGGGTCGGGCCGAAACGGTACTGCGAGAACCAGTTCAAATACCGGAAAC
AACGAGAGCATGTTCCCTCCTTCACCAGTGGCGCGTCCGGCAGGGGAGAT
GTCCAACGCGGATTTCAGGGCAATGTTGAATAAGGAGTAG
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