prot_H-paniculata_contig20435.5298.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20435.5298.1
Unique Nameprot_H-paniculata_contig20435.5298.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length176
Homology
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BLAST of mRNA_H-paniculata_contig20435.5298.1 vs. uniprot
Match: D7FXW5_ECTSI (SAGA-associated factor 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW5_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 5.430e-37
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 0 
Query:    1 QLHRELHTGVLTSERLWAERLHPPPKPKPGGDIYGRVPPKEPSTNITCPSCGRAVGAARYAPHLDKCALGTSRG-ASRTS 79
            +LHRELHTGVLT ERLWAE  +PPPK   GGD+YGR+PP+EPST+ITCPSC RAVGAARYAPHLDKCALG+SRG ASR++
Sbjct:   44 ELHRELHTGVLTKERLWAEHNNPPPKSVAGGDVYGRIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSA 123
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BLAST of mRNA_H-paniculata_contig20435.5298.1 vs. uniprot
Match: A0A6H5KUN9_9PHAE (SAGA-associated factor 11 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.890e-33
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 0 
Query:    2 LHRELHTGVLTSERLWAERLHPPPKPKPGGDIYGRVPPKEPSTNITCPSCGRAVGAARYAPHLDKCALGTSRG-ASRTS 79
            LHRELHTGVLT ERLWAE  +PPPK   GGD+YGR+PP+EPST+ITCPSC RAVGAARYAPHLDKCALG+SRG ASR++
Sbjct:  126 LHRELHTGVLTKERLWAESNNPPPKSVAGGDVYGRIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSA 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20435.5298.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW5_ECTSI5.430e-3778.75SAGA-associated factor 11 n=1 Tax=Ectocarpus silic... [more]
A0A6H5KUN9_9PHAE1.890e-3379.75SAGA-associated factor 11 (Fragment) n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013246SAGA complex, Sgf11 subunitPFAMPF08209Sgf11coord: 44..67
e-value: 1.5E-10
score: 40.5
NoneNo IPR availablePANTHERPTHR46367:SF1ATAXIN-7-LIKE PROTEIN 3coord: 2..145
NoneNo IPR availablePANTHERPTHR46367FAMILY NOT NAMEDcoord: 2..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20435contigH-paniculata_contig20435:577..2950 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20435.5298.1mRNA_H-paniculata_contig20435.5298.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20435 577..2950 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20435.5298.1 ID=prot_H-paniculata_contig20435.5298.1|Name=mRNA_H-paniculata_contig20435.5298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
QLHRELHTGVLTSERLWAERLHPPPKPKPGGDIYGRVPPKEPSTNITCPS
CGRAVGAARYAPHLDKCALGTSRGASRTSRTSRASPTVQETRSVKSSSSA
APASKAPKLSVNSRPSPSTATHQSAGPSGSSSRQPTVHASNSKSARAAGG
GKASSPTRAKFKASSSKPPPLSAKAN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013246SAGA_su_Sgf11