mRNA_H-paniculata_contig20435.5298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20435.5298.1
Unique NamemRNA_H-paniculata_contig20435.5298.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20435.5298.1 vs. uniprot
Match: D7FXW5_ECTSI (SAGA-associated factor 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW5_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 5.430e-37
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 QLHRELHTGVLTSERLWAERLHPPPKPKPGGDIYGRVPPKEPSTNITCPSCGRAVGAARYAPHLDKCALGTSRG-ASRTS 237
            +LHRELHTGVLT ERLWAE  +PPPK   GGD+YGR+PP+EPST+ITCPSC RAVGAARYAPHLDKCALG+SRG ASR++
Sbjct:   44 ELHRELHTGVLTKERLWAEHNNPPPKSVAGGDVYGRIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSA 123
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BLAST of mRNA_H-paniculata_contig20435.5298.1 vs. uniprot
Match: A0A6H5KUN9_9PHAE (SAGA-associated factor 11 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUN9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.890e-33
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:    4 LHRELHTGVLTSERLWAERLHPPPKPKPGGDIYGRVPPKEPSTNITCPSCGRAVGAARYAPHLDKCALGTSRG-ASRTS 237
            LHRELHTGVLT ERLWAE  +PPPK   GGD+YGR+PP+EPST+ITCPSC RAVGAARYAPHLDKCALG+SRG ASR++
Sbjct:  126 LHRELHTGVLTKERLWAESNNPPPKSVAGGDVYGRIPPREPSTSITCPSCNRAVGAARYAPHLDKCALGSSRGRASRSA 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20435.5298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW5_ECTSI5.430e-3778.75SAGA-associated factor 11 n=1 Tax=Ectocarpus silic... [more]
A0A6H5KUN9_9PHAE1.890e-3379.75SAGA-associated factor 11 (Fragment) n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20435contigH-paniculata_contig20435:577..2950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size528
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20435.5298.1prot_H-paniculata_contig20435.5298.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20435 577..2950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929531.8076668-CDS-H-paniculata_contig20435:576..8491622929531.8076668-CDS-H-paniculata_contig20435:576..849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20435 577..849 -
1691480901.3104143-CDS-H-paniculata_contig20435:576..8491691480901.3104143-CDS-H-paniculata_contig20435:576..849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20435 577..849 -
1622929531.8182876-CDS-H-paniculata_contig20435:1367..15341622929531.8182876-CDS-H-paniculata_contig20435:1367..1534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20435 1368..1534 -
1691480901.3187146-CDS-H-paniculata_contig20435:1367..15341691480901.3187146-CDS-H-paniculata_contig20435:1367..1534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20435 1368..1534 -
1622929531.8297987-CDS-H-paniculata_contig20435:2862..29501622929531.8297987-CDS-H-paniculata_contig20435:2862..2950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20435 2863..2950 -
1691480901.3274481-CDS-H-paniculata_contig20435:2862..29501691480901.3274481-CDS-H-paniculata_contig20435:2862..2950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20435 2863..2950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20435.5298.1

>prot_H-paniculata_contig20435.5298.1 ID=prot_H-paniculata_contig20435.5298.1|Name=mRNA_H-paniculata_contig20435.5298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
QLHRELHTGVLTSERLWAERLHPPPKPKPGGDIYGRVPPKEPSTNITCPS
CGRAVGAARYAPHLDKCALGTSRGASRTSRTSRASPTVQETRSVKSSSSA
APASKAPKLSVNSRPSPSTATHQSAGPSGSSSRQPTVHASNSKSARAAGG
GKASSPTRAKFKASSSKPPPLSAKAN
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mRNA from alignment at H-paniculata_contig20435:577..2950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20435.5298.1 ID=mRNA_H-paniculata_contig20435.5298.1|Name=mRNA_H-paniculata_contig20435.5298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2374bp|location=Sequence derived from alignment at H-paniculata_contig20435:577..2950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGCATCGCGAGCTCCACACAGGGGTGCTGACGTCGGAGCGACTGTG
GGCGGAACGTCTTCACCCGCCACCAAAGCCGAAGCCAGGTATGGAGGAAG
ATAAAATTAACTTCTTTTTTTTTGTGAGTTCCAGCACTCGACCGAACGTT
CACAGCTTGCGCGCGCGCGCACACACACACACGCACGTTCCCAGATTTTA
TTTTATTCTATCGAAAATACAGCTCCTTTGTTTACATTTTTATCTTATGT
TGCTCTTTTGTAAGTTCGTTCTTGATTTTTGTGGACTTCAGTGTGTCAAA
CGATATTTCTGTCGAGACCAAGATTTCTTTTTCTTTTTCTTTTTCTTTTT
CTTTTTCTTGTTCAAGAAGAACATCCACTTCGGTTACAGGGTTTTCAAGT
TTTTTTTTTCCTTTTTTTTTCCTTTTTTTTTTCCTTTTTTTTTCCTGTTC
CCGAAAGTACTGTGTACTAGCGCCCCCCCCGTCCCCGCCCCAACCCTGAA
TGGATTCTTGACGCCCTACGCTCAGCCACAACGAAAATAACGTTGTTCAA
TTCTTGCCTTGGAAGCTCCGTTCTTCACAGAATTGAACGCAACATTACAG
TAGGAAGAAGAACCAGATCATCTCTAAGACCAAGACTTGCTGTTGCTGCC
GCTGTCATTGGATTATGACCAACGATTTTTTTTCCTTTTTTTTTTTTACC
CGTCCTTTCATAGTCACGTGAGTTCCCCAACTATCTCTCTCTCTCTCTCT
CTACATATGTATATGGACATATGAACGAACCATTCCTCGGCCACCACTCG
GTACTAGCACCGCGGAGATGTTGCGTGCTCAGTCAGTGCCCAGCCTTAAT
TTTCACCGTGTCTTATCGTCGAAACGAGAGTAGCTTGAGCTCATTTGTTT
CAACTTTTGAGCCCTTTGCGGAGCGGCTAAATTTAGACAAGATATGTATT
CTACCTGAAGCAGATGCGATCAATGCGAATCGTGCATTGTGTGCACCTTC
GGAAATATGCGTGAATGCATGCTATCATTGACTAAGGTTTGATTTGGGTT
TTTGTTTTTAGTTGCATTGCAAAGCGGCGTACGTTAAACTTGCCTCCCAT
CCCCACCCCCACCCCCACCCTCACGGGTACTCGCGGGCATGAACATGGTA
ACACGTGAAACGAATGTGAGCGGCACTCTTGGCGCTCGCTAGCTCACTAG
CTCGCTCGCACTTGTTGCTGCACTCGTCAGATTATTTGGAAAAATCTCGC
AGTGGTCGAGTGCAGTCAGTCTGATTTTTGGTAGACCGTGTCCGAGGTAA
CTCTCACATGACCGTCAATTGCCACATATCTCTACCTTCGCACAGGTGGC
TGTTTTGACTGCTGTCGTAACTCTCGAACCCTCCCCCTCCCTCCCATCCG
CTACCTTGTTTTGTAGGAGGTGACATTTACGGTCGCGTTCCACCGAAGGA
GCCATCGACGAACATCACGTGTCCTAGCTGCGGGAGGGCGGTTGGGGCGG
CTCGTTACGCACCTCATTTGGACAAGTGTGCCCTCGGAACTTCGCGAGGA
GCATCTCGGACGTCCAGGACCAGTAGAGCCTCGGTGAGAATGTTCGTTCA
CTCATTCAATTATTCACTCATTCAATTATTCACTCATTCACCCCTTGCCT
GTTGATCTCCGGGTCCTGCTCTCTCTCTCTCCCTCTGTCGTTCTTGCCCT
TTTACTGTGTGTTGGGTGATGGCTTGTGCCCTATGATTTGGGAATGGATT
CGTGTAGAGCGTGCGTGTGATGGGTCCATTTGTTGTGTATTTGCGTCGGT
ACAATATATCCGACTGTTTCCTCAGTTCCCTCTGACGGAGGAGAAAAAGG
ATATCATGTATGTCCGTGTAAAACATCCGGCACAAACTCACACATGCCCT
GTTTGGTTCCCGGTCAGTCAGTCAATCATGGCAAAGAGTTAGGATTTAAC
ACATGTAGATAATGAAATACCCAATTTCGAAGTATTTTCTCAAATATTTC
ACGTATAGGTATTACTCCCTTTCCCTCCCTTTCGCTGTTTTCTGCTTTTT
TTCTTTTCTTTTCTTGTCGTAATATATATATATATATATATCTTGTAATA
GCCAACGGTGCAGGAGACAAGGTCTGTCAAAAGTTCATCCTCTGCAGCTC
CTGCTTCCAAAGCGCCCAAGCTGTCAGTCAACTCCCGGCCATCACCCTCA
ACCGCAACGCACCAATCGGCCGGCCCCAGTGGCAGCAGCAGCAGACAGCC
CACTGTACACGCGAGCAACAGCAAGTCAGCACGCGCGGCCGGCGGTGGCA
AAGCGTCCTCCCCAACCAGAGCAAAATTCAAAGCTAGCTCGAGTAAACCA
CCTCCGCTGTCGGCGAAAGCCAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20435:577..2950-

>mRNA_H-paniculata_contig20435.5298.1 ID=mRNA_H-paniculata_contig20435.5298.1|Name=mRNA_H-paniculata_contig20435.5298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig20435:577..2950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGCATCGCGAGCTCCACACAGGGGTGCTGACGTCGGAGCGACTGTG
GGCGGAACGTCTTCACCCGCCACCAAAGCCGAAGCCAGCAGCTGCATCGC
GAGCTCCACACAGGGGTGCTGACGTCGGAGCGACTGTGGGCGGAACGTCT
TCACCCGCCACCAAAGCCGAAGCCAGGAGGTGACATTTACGGTCGCGTTC
CACCGAAGGAGCCATCGACGAACATCACGTGTCCTAGCTGCGGGAGGGCG
GTTGGGGCGGCTCGTTACGCACCTCATTTGGACAAGTGTGCCCTCGGAAC
TTCGCGAGGAGCATCTCGGACGTCCAGGACCAGTAGAGCCTCGGAGGTGA
CATTTACGGTCGCGTTCCACCGAAGGAGCCATCGACGAACATCACGTGTC
CTAGCTGCGGGAGGGCGGTTGGGGCGGCTCGTTACGCACCTCATTTGGAC
AAGTGTGCCCTCGGAACTTCGCGAGGAGCATCTCGGACGTCCAGGACCAG
TAGAGCCTCGCCAACGGTGCAGGAGACAAGGTCTGTCAAAAGTTCATCCT
CTGCAGCTCCTGCTTCCAAAGCGCCCAAGCTGTCAGTCAACTCCCGGCCA
TCACCCTCAACCGCAACGCACCAATCGGCCGGCCCCAGTGGCAGCAGCAG
CAGACAGCCCACTGTACACGCGAGCAACAGCAAGTCAGCACGCGCGGCCG
GCGGTGGCAAAGCGTCCTCCCCAACCAGAGCAAAATTCAAAGCTAGCTCG
AGTAAACCACCTCCGCTGTCGGCGAAAGCCAACCCAACGGTGCAGGAGAC
AAGGTCTGTCAAAAGTTCATCCTCTGCAGCTCCTGCTTCCAAAGCGCCCA
AGCTGTCAGTCAACTCCCGGCCATCACCCTCAACCGCAACGCACCAATCG
GCCGGCCCCAGTGGCAGCAGCAGCAGACAGCCCACTGTACACGCGAGCAA
CAGCAAGTCAGCACGCGCGGCCGGCGGTGGCAAAGCGTCCTCCCCAACCA
GAGCAAAATTCAAAGCTAGCTCGAGTAAACCACCTCCGCTGTCGGCGAAA
GCCAAC
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