mRNA_H-paniculata_contig20431.5297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20431.5297.1
Unique NamemRNA_H-paniculata_contig20431.5297.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: A0A836CHZ2_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.760e-39
Identity = 68/99 (68.69%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            ++GVGL+RYTP     T    EG YEIL+NPRKTY+TPPG GFLPR+TA HHQQH+ ALVR  L  A +  ADVSVIC+TKGPGMGGPL +CAVCARTL
Sbjct:   27 KVGVGLVRYTP---SRTGGDGEGTYEILANPRKTYVTPPGVGFLPRQTAQHHQQHITALVRLALKQAGVGAADVSVICFTKGPGMGGPLCACAVCARTL 122
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: A0A7S3HK42_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK42_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.840e-38
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            ++GVG++RY           SEG YEILSNPRKTY+TP G GFLPRETAWHHQQH+ ALVR  L  A+L  A+V  ICYTKGPGMGGPLRSCAVCAR L
Sbjct:   26 KVGVGIVRY-----------SEGSYEILSNPRKTYITPAGQGFLPRETAWHHQQHINALVRHALQEANLSAAEVDCICYTKGPGMGGPLRSCAVCARML 113
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: A0A2D4BH80_PYTIN (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH80_PYTIN)

HSP 1 Score: 134 bits (337), Expect = 4.040e-36
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            ++GVG++RY            +G  +ILSNPRKTY+TPPG GFLPRETAWHHQ H V +VR  L+ A++ P D+ VICYTKGPGMGGPLRS AVCAR L
Sbjct:   26 KLGVGIIRYR----------QDGETDILSNPRKTYITPPGQGFLPRETAWHHQNHAVGIVRAALVEANISPKDIDVICYTKGPGMGGPLRSAAVCARML 114
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: A0A6S7ZQS1_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZQS1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 8.810e-36
Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            +IGVG++RY   G      G  G +EIL NPRKT++T PGTGFLPRETAWHHQ HVV +VR  L  A++ P  V  IC+TKGPGMGGPL SCA+CARTL
Sbjct:   20 KIGVGIVRYVGGGGK---FGDGGEFEILCNPRKTFITAPGTGFLPRETAWHHQNHVVQIVRTALNEANITPEQVDCICFTKGPGMGGPLTSCAICARTL 115
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: A0A6U1PPX4_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PPX4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 9.490e-36
Identity = 63/99 (63.64%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            ++GVG++RY+     E        YEIL NPRKTY+TPPG GFLPRETAWHHQQH+V LVR  L  A L  AD+  I +TKGPGMGGPLRSCAVCAR L
Sbjct:   46 KVGVGIVRYSKDNASEP-------YEILCNPRKTYVTPPGQGFLPRETAWHHQQHIVPLVRLALNEAGLSSADIDAIAFTKGPGMGGPLRSCAVCARML 137
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: M4C1E6_HYAAE (N(6)-L-threonylcarbamoyladenine synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1E6_HYAAE)

HSP 1 Score: 128 bits (321), Expect = 3.760e-35
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            ++ VG+L Y           + G  EILSNPRKTY+TPPG GFLPRETAWHHQ HVVA+VR  L+ A++ P ++  ICYTKGPGMGGPLRS AVCAR L
Sbjct:    9 KLAVGILWYR----------TNGETEILSNPRKTYITPPGHGFLPRETAWHHQNHVVAIVRAALVEANVSPDELDCICYTKGPGMGGPLRSAAVCARML 97
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: A0A7S2WC24_9STRA (N(6)-L-threonylcarbamoyladenine synthase (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC24_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.390e-35
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            +IGVG++RY   G      G  GR+  +SNPRKT+LTPPG GFLPRETAWHHQ HVV +VR+ L  A+++P ++  IC+T+GPGMG PL SCA+CARTL
Sbjct:   14 KIGVGIVRYDGGGGK---FGDGGRFVTMSNPRKTFLTPPGQGFLPRETAWHHQAHVVGIVREALNEANIKPEEIDCICFTQGPGMGAPLNSCAMCARTL 109
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: H3G886_PHYRM (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3G886_PHYRM)

HSP 1 Score: 130 bits (328), Expect = 6.850e-35
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            ++GVG++RY           ++G  EILSNPRKTY+TPPG GFLPRETAWHHQ HVV +VR  L  A++ P  +  ICYTKGPGMGGPLRS AVCAR L
Sbjct:    9 KLGVGIIRYR----------ADGETEILSNPRKTYITPPGQGFLPRETAWHHQNHVVGIVRVALAEANVSPQQLDCICYTKGPGMGGPLRSAAVCARML 97
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: A0A7S2W3U1_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3U1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.720e-34
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            ++GVG+L YTPP            Y ILSNPRKTY+ PPG GF+PRET  HHQ H+V L+R  L  A L P+ V +ICYTKGPGMGGPL+SCA+CARTL
Sbjct:   85 KVGVGVLLYTPPST----------YSILSNPRKTYVAPPGHGFMPRETQKHHQAHIVGLIRTALEQAGLEPSQVDLICYTKGPGMGGPLQSCAICARTL 173
[Close]
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Match: A0A662WI11_9STRA (N(6)-L-threonylcarbamoyladenine synthase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WI11_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.870e-34
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAWHHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTL 297
            ++ VG++RY           ++G  +ILSNPRKTY+TPPG GFLPRETAWHHQ H+V +VR  L  A L P ++  ICYTKGPGMG PLRS AVCAR L
Sbjct:   24 KLAVGIIRYR----------ADGETDILSNPRKTYITPPGQGFLPRETAWHHQNHIVGIVRASLAEAKLSPQELDCICYTKGPGMGSPLRSAAVCARML 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20431.5297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHZ2_9STRA2.760e-3968.69Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S3HK42_9STRA2.840e-3867.68Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A2D4BH80_PYTIN4.040e-3661.62Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A6S7ZQS1_9STRA8.810e-3662.63Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A6U1PPX4_9STRA9.490e-3663.64Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
M4C1E6_HYAAE3.760e-3561.62N(6)-L-threonylcarbamoyladenine synthase n=1 Tax=H... [more]
A0A7S2WC24_9STRA4.390e-3559.60N(6)-L-threonylcarbamoyladenine synthase (Fragment... [more]
H3G886_PHYRM6.850e-3561.62Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2W3U1_9STRA2.720e-3460.61Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A662WI11_9STRA2.870e-3458.59N(6)-L-threonylcarbamoyladenine synthase n=1 Tax=N... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20431contigH-paniculata_contig20431:3183..4143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3.2e-28
Seed eggNOG ortholog67593.Physo108428
Preferred nameKAE1
KEGG rclassRC00070,RC00416
KEGG koko:K01409,ko:K09487
KEGG ReactionR10648
KEGG Pathwayko04141,ko04151,ko04626,ko04657,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04626,map04657,map04915,map04918,map05200,map05215,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Component of the EKC KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity
EggNOG OGs3QCZY@4776,COG0533@1,KOG2708@2759
EC2.3.1.234
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko03110
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929531.7630413-CDS-H-paniculata_contig20431:3182..33441622929531.7630413-CDS-H-paniculata_contig20431:3182..3344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20431 3183..3344 +
1691480901.2824843-CDS-H-paniculata_contig20431:3182..33441691480901.2824843-CDS-H-paniculata_contig20431:3182..3344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20431 3183..3344 +
1622929531.773752-CDS-H-paniculata_contig20431:4005..41431622929531.773752-CDS-H-paniculata_contig20431:4005..4143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20431 4006..4143 +
1691480901.3004804-CDS-H-paniculata_contig20431:4005..41431691480901.3004804-CDS-H-paniculata_contig20431:4005..4143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20431 4006..4143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20431.5297.1prot_H-paniculata_contig20431.5297.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20431 3183..4143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20431.5297.1

>prot_H-paniculata_contig20431.5297.1 ID=prot_H-paniculata_contig20431.5297.1|Name=mRNA_H-paniculata_contig20431.5297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
QIGVGLLRYTPPGKDETLSGSEGRYEILSNPRKTYLTPPGTGFLPRETAW
HHQQHVVALVRQVLLAASLRPADVSVICYTKGPGMGGPLRSCAVCARTLA
back to top

mRNA from alignment at H-paniculata_contig20431:3183..4143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20431.5297.1 ID=mRNA_H-paniculata_contig20431.5297.1|Name=mRNA_H-paniculata_contig20431.5297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=961bp|location=Sequence derived from alignment at H-paniculata_contig20431:3183..4143+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATAGGTGTCGGATTGCTTCGATATACACCGCCGGGGAAAGATGAAAC
CTTGTCTGGGTCCGAGGGGCGCTACGAAATACTCTCGAACCCAAGAAAAA
CGTACCTGACTCCGCCAGGAACGGGGTTTTTGCCTCGGGAAACGGCGTGG
CATCACCAGCAGGTGGGTCGTGGTGTGATGGTGTGTGTTTGTGTTTTTAT
CTATATATTTATTTGTGTGCGTACGTATGTTTGTGCTTTGTTACAAAACC
CACACCGAAGTATAACCCCCCCCCCCCCTCCCCTCTCCGCCCCTCCCCCG
TGAATATGACCGCTGTTGATAACAATTCATGTACAGTTTTATGTCAAGCA
ATATATGGGAATACATTGGAATCCGATTTATTCCGACTCTGAATACCGCC
AAGTTTCGAATACCTCAATTTTTGGGGGCTTGGTCCAAAAATGCGTTGCC
TCACAACATAAGTCACTTGCGATAAGCAGGACCTGGAACTGGCCAGAATC
CGAAATCCGAAATTCGAATTGTTCCGACCCTGAGTATCGCCTAACTTTGA
ATAATGACCCTATATTATCGAGGTTTATTCGACTGTGTCCAATCCATCGC
CGTAGTTTTGCCGGTGGCTGTGTCTTTTGCTCGCTGCGACGGCATGGCAC
ATGGTCCATTGTTCAAGCCACTATTTATTTTTTCGCCACGTTCGGTTTTT
CCTTTTATTCATTAGTGTATCTATCTGTTACCCCCACAATACCCTTTCAT
CGTTTCCCTCTCTTTCGCTCCTTCCCTCCTCCCTCAACTTTATATATATA
TATGTATTATTTTACGCTCCCAGCACGTCGTGGCTCTGGTTAGACAGGTG
CTTCTCGCTGCGTCGTTGAGACCCGCAGATGTTAGCGTCATTTGCTACAC
CAAGGGGCCGGGCATGGGAGGCCCACTGCGCTCGTGCGCCGTATGTGCCA
GGACCTTAGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20431:3183..4143+

>mRNA_H-paniculata_contig20431.5297.1 ID=mRNA_H-paniculata_contig20431.5297.1|Name=mRNA_H-paniculata_contig20431.5297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig20431:3183..4143+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATAGGTGTCGGATTGCTTCGATATACACCGCCGGGGAAAGATGAAAC
CTTGTCTGGGTCCGAGGGGCGCTACGAAATACTCTCGAACCCAAGAAAAA
CGTACCTGACTCCGCCAGGAACGGGGTTTTTGCCTCGGGAAACGGCGTGG
CATCACCAGCAGCAGATAGGTGTCGGATTGCTTCGATATACACCGCCGGG
GAAAGATGAAACCTTGTCTGGGTCCGAGGGGCGCTACGAAATACTCTCGA
ACCCAAGAAAAACGTACCTGACTCCGCCAGGAACGGGGTTTTTGCCTCGG
GAAACGGCGTGGCATCACCAGCAGCACGTCGTGGCTCTGGTTAGACAGGT
GCTTCTCGCTGCGTCGTTGAGACCCGCAGATGTTAGCGTCATTTGCTACA
CCAAGGGGCCGGGCATGGGAGGCCCACTGCGCTCGTGCGCCGTATGTGCC
AGGACCTTAGCACACGTCGTGGCTCTGGTTAGACAGGTGCTTCTCGCTGC
GTCGTTGAGACCCGCAGATGTTAGCGTCATTTGCTACACCAAGGGGCCGG
GCATGGGAGGCCCACTGCGCTCGTGCGCCGTATGTGCCAGGACCTTAGCA
back to top