mRNA_H-paniculata_contig20425.5296.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20425.5296.1
Unique NamemRNA_H-paniculata_contig20425.5296.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: D7FRT3_ECTSI (Mitochondrial inner membrane protease ATP23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT3_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.340e-25
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALAY 177
            GPA+ ARA+LEAPPP +VLCANRL +RREVEEA+VHELVHA+DYLV+G  LLDCQALAY
Sbjct:   65 GPAAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQALAY 123
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: A0A7S3Y7S5_HETAK (Mitochondrial inner membrane protease ATP23 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7S5_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 9.350e-19
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALAY 177
            G   GARAFLE PP ++VLCANRL   REVEEA+VHELVHA+D+ + GR+L DC+ LAY
Sbjct:   50 GVEGGARAFLETPPTALVLCANRLRGAREVEEALVHELVHAYDFCIKGRDLFDCKQLAY 108
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: A0A836CIN8_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.760e-17
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALAY 177
            GP  GARAFLE PP ++VLC NR+    E+EEA+VHELVHAFDY  S RNL  C++LA+
Sbjct:   92 GPEGGARAFLETPPATLVLCVNRMRGAEEMEEALVHELVHAFDYCASNRNLFSCKSLAH 150
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: A0A4D9CLJ2_9STRA (Mitochondrial inner membrane protease ATP23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLJ2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.120e-14
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALAY 177
            G A  ARA++EAPP S+VLCANRL  RRE+EEA+VHELVH +D+ +   +L  C+ LAY
Sbjct:   91 GLAMKARAYMEAPPMSVVLCANRLQDRREMEEALVHELVHVYDHALVQMDLTTCKDLAY 149
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: K8Z3J4_NANGC (Argonaute 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3J4_NANGC)

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-13
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALAY 177
            G A  ARA++EAPP S+VLCANRL  RRE+EEA+VHELVH +D+ +   +L  C+ LAY
Sbjct:  529 GLAMKARAYMEAPPMSVVLCANRLQDRREMEEALVHELVHVYDHALVQMDLTTCKDLAY 587
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: G4Z5L5_PHYSP (Mitochondrial inner membrane protease ATP23 n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z5L5_PHYSP)

HSP 1 Score: 70.1 bits (170), Expect = 1.990e-13
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALA 174
            GP   ARAF  APPP++V CANRL + REVEE MVHEL+HA+D+ V   ++     LA
Sbjct:   49 GPEGNARAFFSAPPPTVVFCANRLHSAREVEETMVHELIHAYDFTVRKMDITKSDVLA 106
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: A0A5D6XLN7_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLN7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.100e-13
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALA 174
            GP   ARAF  APPP++V CANRL + REVEE MVHEL+HA+D+ V   +L     LA
Sbjct:   53 GPEGRARAFFSAPPPTVVFCANRLHSEREVEETMVHELIHAYDFTVRKMDLTKSDLLA 110
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: A0A484E5N8_BRELC (Mitochondrial inner membrane protease ATP23 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5N8_BRELC)

HSP 1 Score: 70.1 bits (170), Expect = 3.360e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALA 174
            GP   ARAF  APPP++VLCANRL + +EVEE++VHEL+HA+DY V   ++     LA
Sbjct:   72 GPEGNARAFFSAPPPTVVLCANRLHSAQEVEESIVHELIHAYDYTVRKMDITKSDILA 129
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BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: K3WBI6_GLOUD (Mitochondrial inner membrane protease ATP23 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBI6_GLOUD)

HSP 1 Score: 69.3 bits (168), Expect = 4.630e-13
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALA 174
            GP   ARAF  APPP+IV CANRL + REVEE MVHEL+HA+D+ V   ++     LA
Sbjct:   59 GPEGRARAFFSAPPPTIVFCANRLHSAREVEETMVHELIHAYDFTVRKMDITKSDLLA 116
[Close]
BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Match: D0NAK0_PHYIT (Mitochondrial inner membrane protease ATP23 n=12 Tax=Phytophthora TaxID=4783 RepID=D0NAK0_PHYIT)

HSP 1 Score: 68.9 bits (167), Expect = 5.560e-13
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRNLLDCQALA 174
            GP   ARAF  APPP++V CANRL + REVEE MVHEL+HA+D+ V   ++     LA
Sbjct:   49 GPEGNARAFFSAPPPTVVFCANRLHSVREVEETMVHELIHAYDFTVRKMDITKSDILA 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20425.5296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRT3_ECTSI2.340e-2579.66Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A7S3Y7S5_HETAK9.350e-1966.10Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A836CIN8_9STRA2.760e-1762.71Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A4D9CLJ2_9STRA9.120e-1459.32Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
K8Z3J4_NANGC1.600e-1359.32Argonaute 1 (Fragment) n=1 Tax=Nannochloropsis gad... [more]
G4Z5L5_PHYSP1.990e-1355.17Mitochondrial inner membrane protease ATP23 n=3 Ta... [more]
A0A5D6XLN7_9STRA2.100e-1356.90Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A484E5N8_BRELC3.360e-1355.17Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
K3WBI6_GLOUD4.630e-1356.90Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
D0NAK0_PHYIT5.560e-1355.17Mitochondrial inner membrane protease ATP23 n=12 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20425contigH-paniculata_contig20425:4132..4314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.3e-20
Seed eggNOG ortholog2880.D7FRT3
Preferred nameXRCC6BP1
KEGG koko:K18156,ko:K21773
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000726,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004677,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005958,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0030054,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070419,GO:0071704,GO:0071944,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990391
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsKOG3314@1,KOG3314@2759
Ec32 ortholog descriptionPeptidase M76, ATP23
Ec32 orthologEc-25_000300.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929531.728737-CDS-H-paniculata_contig20425:4131..43141622929531.728737-CDS-H-paniculata_contig20425:4131..4314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20425 4132..4314 -
1691480901.2676666-CDS-H-paniculata_contig20425:4131..43141691480901.2676666-CDS-H-paniculata_contig20425:4131..4314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20425 4132..4314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20425.5296.1prot_H-paniculata_contig20425.5296.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20425 4132..4314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20425.5296.1

>prot_H-paniculata_contig20425.5296.1 ID=prot_H-paniculata_contig20425.5296.1|Name=mRNA_H-paniculata_contig20425.5296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
GPASGARAFLEAPPPSIVLCANRLATRREVEEAMVHELVHAFDYLVSGRN
LLDCQALAYR*
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mRNA from alignment at H-paniculata_contig20425:4132..4314-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20425.5296.1 ID=mRNA_H-paniculata_contig20425.5296.1|Name=mRNA_H-paniculata_contig20425.5296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig20425:4132..4314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCCGGCCTCTGGAGCACGGGCGTTCCTGGAAGCACCCCCCCCGTCGAT
AGTGCTGTGCGCCAACCGCCTTGCCACTCGACGCGAGGTGGAGGAAGCCA
TGGTTCACGAGCTTGTGCATGCCTTCGACTACCTCGTGTCCGGTCGCAAC
TTGCTCGATTGTCAAGCCTTGGCGTACAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20425:4132..4314-

>mRNA_H-paniculata_contig20425.5296.1 ID=mRNA_H-paniculata_contig20425.5296.1|Name=mRNA_H-paniculata_contig20425.5296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig20425:4132..4314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCCGGCCTCTGGAGCACGGGCGTTCCTGGAAGCACCCCCCCCGTCGAT
AGTGCTGTGCGCCAACCGCCTTGCCACTCGACGCGAGGTGGAGGAAGCCA
TGGTTCACGAGCTTGTGCATGCCTTCGACTACCTCGTGTCCGGTCGCAAC
TTGCTCGATTGTCAAGCCTTGGCGTACAGGTAAGGGCCGGCCTCTGGAGC
ACGGGCGTTCCTGGAAGCACCCCCCCCGTCGATAGTGCTGTGCGCCAACC
GCCTTGCCACTCGACGCGAGGTGGAGGAAGCCATGGTTCACGAGCTTGTG
CATGCCTTCGACTACCTCGTGTCCGGTCGCAACTTGCTCGATTGTCAAGC
CTTGGCGTACAGGTAA
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