mRNA_H-paniculata_contig2042.5293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2042.5293.1 vs. uniprot
Match: D8LIH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH7_ECTSI) HSP 1 Score: 222 bits (566), Expect = 2.200e-65 Identity = 121/167 (72.46%), Postives = 128/167 (76.65%), Query Frame = 2
Query: 239 STLGVARDKDGGSLRALCQACHGSGEK-EPNKACVLVTIYRRESDLFALLLRERRDTT-----------VGSGVAKVGSGKLTVLCDMTLDDAVHLEPQSTPLVVKVVNTCGDRRAYLLEFGRAVDLNTFQRAFAAARGYFRQMLTLRTLVADSFWQGFSSGAGAPV 703
S LGVAR+KD G+LRALCQ C SGE E KACVLVTIYRRESDLFALLLRER D +G G A S LTVLCDM+LDD VHLE QS PLVVKVVNTCG R AYLLEFGRA+DL TFQRAF +ARGYFRQMLTLRTLVADSFWQGF+SGAG P
Sbjct: 19 SILGVAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRERHDAXXXXXXXXXXXXLGGGEAT--SAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPA 183
BLAST of mRNA_H-paniculata_contig2042.5293.1 vs. uniprot
Match: A0A6H5JBN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN9_9PHAE) HSP 1 Score: 220 bits (561), Expect = 1.310e-64 Identity = 119/165 (72.12%), Postives = 125/165 (75.76%), Query Frame = 2
Query: 239 STLGVARDKDGGSLRALCQACHGSGEK-EPNKACVLVTIYRRESDLFALLLRERRDTTVGS---------GVAKVGSGKLTVLCDMTLDDAVHLEPQSTPLVVKVVNTCGDRRAYLLEFGRAVDLNTFQRAFAAARGYFRQMLTLRTLVADSFWQGFSSGAGAPV 703
S LGVAR+KD G+LRALCQ C SGE E KACVLVTIYRRESDLFALLLRER G K S LTVLCDM+LDD VHLE QS PLVVKVVNTCG R AYLLEFGRA+DL TFQRAF +ARGYFRQMLTLRTLVADSFWQGF+SGAG P
Sbjct: 20 SILGVAREKDDGALRALCQVCSTSGEVGEARKACVLVTIYRRESDLFALLLRERXXXXXXXXXXXXXXXRGGGKAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLVTFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPA 184
BLAST of mRNA_H-paniculata_contig2042.5293.1 vs. uniprot
Match: A0A6H5J729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J729_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.120e-14 Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query: 1754 TEDVCFLCKEGGDLVECDEGTDWSKKVKAKYASLGNPSPRPGQPYSCCGI 1903
TEDVCFLCKEGG+LVECDEGT WS++VK K SLG P P PG +SCCG+
Sbjct: 48 TEDVCFLCKEGGNLVECDEGTSWSRRVKLKLESLGKPLPAPGTAFSCCGV 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2042.5293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2042.5293.1 >prot_H-paniculata_contig2042.5293.1 ID=prot_H-paniculata_contig2042.5293.1|Name=mRNA_H-paniculata_contig2042.5293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=633bp MITSTFGARRLPVLDYIRGISVLIFAFKLQNRKRGKRERSSVYNCRARDTback to top mRNA from alignment at H-paniculata_contig2042:6544..22778+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2042.5293.1 ID=mRNA_H-paniculata_contig2042.5293.1|Name=mRNA_H-paniculata_contig2042.5293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16235bp|location=Sequence derived from alignment at H-paniculata_contig2042:6544..22778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2042:6544..22778+ >mRNA_H-paniculata_contig2042.5293.1 ID=mRNA_H-paniculata_contig2042.5293.1|Name=mRNA_H-paniculata_contig2042.5293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3798bp|location=Sequence derived from alignment at H-paniculata_contig2042:6544..22778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |