mRNA_H-paniculata_contig20419.5291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20419.5291.1
Unique NamemRNA_H-paniculata_contig20419.5291.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5K3H6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.560e-14
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVI-IKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G V+W +RTQ+     TTEAEY A+A+++ EVL LRQV   ++P    Y+V  + EDNQG   + HN  S+  ++HIDV+HY +   VE  ++ +
Sbjct:  848 GCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRIMLPDAGRYAVHPVFEDNQGAIQIAHNPISNSNSKHIDVRHYFIRKLVERKEISI 942
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BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.650e-14
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G V+W +RTQ+     TTEAEY A+A+++ EVL LRQV  F++P      + + EDNQG   + HN  ++  ++HIDV+H+ + + VE  ++ +
Sbjct:  250 GCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISI 343
[Close]
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.660e-14
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G V+W +RTQ+     TTEAEY A+A+++ EVL LRQV  F++P      + + EDNQG   + HN  ++  ++HIDV+H+ + + VE  ++ +
Sbjct:  195 GCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 288
[Close]
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.690e-14
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G V+W +RTQ+     TTEAEY A+A+++ EVL LRQV  F++P      + + EDNQG   + HN  ++  ++HIDV+H+ + + VE  ++ +
Sbjct:  185 GCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 278
[Close]
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.550e-14
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G V+W +RTQ+     TTEAEY A+A+++ EVL LRQV  F++P      + + EDNQG   + HN  ++  ++HIDV+H+ + + VE  ++ +
Sbjct:  312 GCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 405
[Close]
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.590e-14
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G V+W +RTQ+     TTEAEY A+A+++ EVL LRQV  F++P      + + EDNQG   + HN  ++  ++HIDV+H+ + + VE  ++ +
Sbjct: 1346 GCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 1439
[Close]
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5JNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-13
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G V+W +RTQ+     TTEAEY A+A+++NEVL LRQ+  F++P      + + E NQG   + HN   +  ++HIDV+H+ +   VE  ++ M
Sbjct:  126 GCVTWFSRTQKCVTLSTTEAEYVAIADVLNEVLFLRQLWRFMLPDAGMPCIPVFEGNQGAIQIAHNPIVNSNSKHIDVRHHYIRGLVERKEISM 219
[Close]
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.340e-13
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G V+W +RTQ+     TTEAEY A A+++ EVL LRQV  F++P      + + EDNQG   + HN  ++  ++HIDV+H+ + + VE  ++ +
Sbjct:  287 GCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 380
[Close]
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5KL46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL46_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.330e-13
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    7 VSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            V+W +RTQ+     TTEAEY A+A+++ EVL LRQV  F++P      + + EDNQG   + HN  ++  ++ IDV+H  + + VE  ++ M
Sbjct:   45 VTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKRIDVRHRLIRELVERKEISM 136
[Close]
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.770e-13
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYSVIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDM 282
            G +SW +RTQ+     TTEAEY +LA+++ EVL LRQV  F++P      + + EDNQG   +  N  S+  ++HIDV+H+ + + V   ++ +
Sbjct:  128 GCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISI 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20419.5291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3H6_9PHAE4.560e-1442.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE4.650e-1439.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE4.660e-1439.36Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE4.690e-1439.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE7.550e-1439.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE8.590e-1439.36Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JNU8_9PHAE1.150e-1339.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3H4_9PHAE1.340e-1339.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL46_9PHAE3.330e-1339.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE4.770e-1338.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20419contigH-paniculata_contig20419:4322..4618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue6.2e-08
Seed eggNOG ortholog42099.EPrPV00000023519
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs1MIKP@121069,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929531.2163022-CDS-H-paniculata_contig20419:4321..46181622929531.2163022-CDS-H-paniculata_contig20419:4321..4618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20419 4322..4618 -
1691480900.9706652-CDS-H-paniculata_contig20419:4321..46181691480900.9706652-CDS-H-paniculata_contig20419:4321..4618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20419 4322..4618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20419.5291.1prot_H-paniculata_contig20419.5291.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20419 4322..4618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20419.5291.1

>prot_H-paniculata_contig20419.5291.1 ID=prot_H-paniculata_contig20419.5291.1|Name=mRNA_H-paniculata_contig20419.5291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
GAVSWHARTQEMTAAETTEAEYAALAEMVNEVLILRQVLAFIIPTLEHYS
VIIKEDNQGVENMTHNKHSSRRTRHIDVKHYNVHDAVEAGKVDMGTKE*
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mRNA from alignment at H-paniculata_contig20419:4322..4618-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20419.5291.1 ID=mRNA_H-paniculata_contig20419.5291.1|Name=mRNA_H-paniculata_contig20419.5291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig20419:4322..4618- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGTCAGTTGGCACGCAAGAACTCAAGAGATGACAGCGGCGGAAAC
AACAGAAGCCGAGTACGCGGCGTTGGCGGAGATGGTGAACGAAGTACTGA
TTCTGCGCCAAGTGCTAGCGTTCATAATACCAACGCTGGAACACTATTCC
GTAATAATTAAGGAAGACAATCAAGGGGTCGAAAATATGACCCACAACAA
GCACAGCAGTCGGAGGACGCGTCACATCGACGTCAAGCACTACAATGTTC
ACGATGCGGTTGAGGCTGGCAAGGTTGACATGGGGACCAAAGAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20419:4322..4618-

>mRNA_H-paniculata_contig20419.5291.1 ID=mRNA_H-paniculata_contig20419.5291.1|Name=mRNA_H-paniculata_contig20419.5291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig20419:4322..4618- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGTCAGTTGGCACGCAAGAACTCAAGAGATGACAGCGGCGGAAAC
AACAGAAGCCGAGTACGCGGCGTTGGCGGAGATGGTGAACGAAGTACTGA
TTCTGCGCCAAGTGCTAGCGTTCATAATACCAACGCTGGAACACTATTCC
GTAATAATTAAGGAAGACAATCAAGGGGTCGAAAATATGACCCACAACAA
GCACAGCAGTCGGAGGACGCGTCACATCGACGTCAAGCACTACAATGTTC
ACGATGCGGTTGAGGCTGGCAAGGTTGACATGGGGACCAAAGAATAGGGG
GCGGTCAGTTGGCACGCAAGAACTCAAGAGATGACAGCGGCGGAAACAAC
AGAAGCCGAGTACGCGGCGTTGGCGGAGATGGTGAACGAAGTACTGATTC
TGCGCCAAGTGCTAGCGTTCATAATACCAACGCTGGAACACTATTCCGTA
ATAATTAAGGAAGACAATCAAGGGGTCGAAAATATGACCCACAACAAGCA
CAGCAGTCGGAGGACGCGTCACATCGACGTCAAGCACTACAATGTTCACG
ATGCGGTTGAGGCTGGCAAGGTTGACATGGGGACCAAAGAATAG
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