mRNA_H-paniculata_contig1082.529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1082.529.1
Unique NamemRNA_H-paniculata_contig1082.529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: D7FJF1_ECTSI (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF1_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 3.560e-98
Identity = 196/423 (46.34%), Postives = 254/423 (60.05%), Query Frame = 3 
Query:  210 DGLHLVLLSEQAKLFLGTQRAAVDGDLLRRNQITKIVCVGTPRFHPNE-----------FEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDMNCRLTAS---------------------------DGLPAL----LMAHATFRWFLFACQVRKYGECLPLDTENWEKRGRDDTQTMAGGMQATTRSYRCKACRASLFYGRNVIDHLHPVVLAANETTYESIARYGDGISWSAARDAASAGSTVGPMNSTARKAKRG---SLRNGRSESDNNGSASRSPTTS---DTCTSVFTEVLPWIGMVDASGRLSG--AESLRKITCPGRNG-MGCGSKIGAWNLQGTTCSCGRTVKPSVQFTLSRIE 1325
            DGL+LV+  + A+LF+GTQ+AA D  LLRR+++++IVCVGTP FH  +             YLEV +LD+PSENLL R D+C SFIE GM     VLVNCV+AQSRSPTVV AYLM+ KG+++A A+E+++ AQPT++INPGFQAQL LY D+ CRL A+                           +  P+     + A AT+RWFLFAC +   G             G         G +   R YRCKACRA LF   NV+DHLHPVV AA+++T+ S +++GDG SW  ARDAA   +  G   +  R AK     ++R G   + +N +  +S  +S     CTSVFTE L W+ + D  GR SG  A S  KI CPG+ G + CGSK+GAW+L G  CSCGR VKP+ QFTLSRIE
Sbjct:    4 DGLYLVVPEKGARLFVGTQKAAQDRSLLRRHRVSRIVCVGTPAFHQGDDDEVHSNGSKNISYLEVDILDLPSENLLGRLDSCVSFIEEGMSREENVLVNCVYAQSRSPTVVAAYLMRLKGLSVAQAIELVQEAQPTVHINPGFQAQLDLYSDLGCRLPATKKVEIGPTAPSAGGRGVAPEEPIGISQESKPSTNTTTVWAAATYRWFLFACGLNLGGGFG----------GEGGHNGAFHGGEGCGRLYRCKACRAPLFRDSNVLDHLHPVVQAASDSTFASFSKHGDGSSWIKARDAADI-AAAGSTKTVVRGAKGRHDPTVRRGGGATHSNNNCGKSVVSSAGKGMCTSVFTEALDWVVVADR-GRHSGHFAHSSGKICCPGKKGTVVCGSKLGAWSLDGINCSCGRLVKPAFQFTLSRIE 414
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BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: A0A4P9ZV35_9FUNG (Protein-tyrosine-phosphatase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZV35_9FUNG)

HSP 1 Score: 120 bits (302), Expect = 5.340e-26
Identity = 111/392 (28.32%), Postives = 172/392 (43.88%), Query Frame = 3 
Query:  219 HLVLLSEQAKLFLGTQRAAVDGDLLRRNQITKIVCVGT---PRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDMNCRLTASDGLPALLMAHATFRWFLFACQVRKYGECLPLDTENWEKRGRDD------------------TQTMAGGMQAT--TRSYRCKACRASLFYGRNVIDHLHPVVLAANETTYESIARYGDGISWSAARDAASAGSTVGPMNSTARKAKRGSLRNGRSESDNNGSASRSPTTSDTCTSVFTEVLPWIGMVDASGRLSGAESLRKITCPGRNGMGCGSKIGAWNLQGTTCSCGRTVKPSVQFTLSRIE 1325
            HL+L      L+LG   AA D   LR+  IT I+CVG+   PRF P +F+Y  + + D PSEN+   F     FI   +R G  VLV+C+   SRS +VV+AY+MK   + L +A  +++  +  I  NPGF  QL +Y  M C + ++         HAT+R +  A +        P+ T+      R D                  +   A  + AT     YRCK CR  LF    V++H      +       +  +Y                  + P++ T+  A     R  ++      S++++   S  C+S F E + WI      G  +G    R I C       CG+K+GA++  G++CSC R V P+     S+++
Sbjct:    5 HLIL----PHLYLGNYDAASDMRFLRQANITHILCVGSYLSPRF-PQQFQYYCIDIDDDPSENIQQYFPKTHPFIWNAIRGGGNVLVHCMAGISRSASVVIAYIMKSLEMPLKEAYSLVQEKRDFIQPNPGFYKQLQMYESMGCEVGSN---------HATYRRYEAAREAETKRATRPVPTKPNSPTYRPDQHINIPVTVMSTAGPSHTSPAPAAALAATGGKTGYRCKKCRHVLFNDDFVVEHAPAATKSFTGHKNHNQPQY-----------------IIQPISETSN-AMFTERRYLQTALPTPPSSTQTKGPSAPCSSYFVEPMKWI-----DGAHNGTHEGR-IDC-----SKCGTKLGAYDWAGSSCSCSRWVTPAFMIHKSKVD 353
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BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: A0A225VA18_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA18_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.330e-25
Identity = 78/245 (31.84%), Postives = 113/245 (46.12%), Query Frame = 3 
Query:  159 LDLINQRMSAICQHPGGDGLHLVLLSEQAKLFLGTQRAAVDGDLLRRNQITKIVCVGTPRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDMNCRLTASDGLPALLMAHATFRWFLFACQVRKYGECLPLDTENWEKRGRDDTQTMAGGMQATTRSYRCKACRASLFYGRNVIDHLHP 893
            L +++  ++   QHP  +G         + LFLG   AA D   LR N I  +V +GT        E L + +LD+  E LL  FD C +F++  +     VLV+CV+ QSRS T+ VAYLM  +G  L +A ++++ A+P I+INPGF  QL L+  M          PA    HA  R  +   Q  K G    + T    + G                S  C+ C   L   RN++ H +P
Sbjct:    9 LPVVSLLLNRQRQHPLLEGFPTAARISNSSLFLGEAGAAQDATFLRANSIQAVVALGTGNLAAKPCEVLLIDILDMEDELLLPHFDECIAFLKKYLMQSLAVLVHCVYGQSRSATICVAYLMATQGQTLLEAYDVVQQARPCISINPGFLKQLELFERMGSDPEIMGNTPA----HAELRTMMAQRQRMKTGITDVISTPQLLRPGS---------------SMCCRKCNYVLCTMRNLVSHSNP 234
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BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: A0A3R7GL67_9STRA (Protein-tyrosine-phosphatase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GL67_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.760e-23
Identity = 73/247 (29.55%), Postives = 113/247 (45.75%), Query Frame = 3 
Query:  165 LINQRMSAICQHPGGDGLHLVLLSEQAKLFLGTQRAAVDGDLLRRNQITKIVCVGTPRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDMNCRLTASDGLPALLMAHATFRWFLFACQVRKYGECLPLDTENWEKRGRDDTQTMAGGMQATTRSYRCKACRASLFYGRNVIDHLHPVVLA 905
            +++Q +    QHP  +G       +   LFLG   AA D   L +N+I  +V +GT        + L + +LD+  E LL  F  C  F+E  + +    LV+CV+ QSRS  + VAYLM+++ + L +A + ++ A+P I INPGF  QL L++    R+     +  +  AHA  R  +   Q  K G    +      + G                S  C+ C   L   RN +DH  P  +A
Sbjct:    7 IVSQLLHRQQQHPLLEGFPTAARIDDLPLFLGEAGAAQDSAFLDKNEIKAVVALGTGNLTAKPCDVLLIDILDMEDELLLPHFGQCIEFLEQHLNALNAALVHCVYGQSRSAAICVAYLMQKRNLTLLEAYDFVQRARPCIFINPGFLRQLELFQ----RMQNDPDIMGVTSAHAELRTMMARQQRMKTGTADLIAVPQLVRPGN---------------SVCCRKCNYVLCTNRNQLDHRSPDAVA 234
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BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: A0A3F2RFB4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFB4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.310e-22
Identity = 59/178 (33.15%), Postives = 94/178 (52.81%), Query Frame = 3 
Query:  165 LINQRMSAICQHPGGDGLHLVLLSEQAKLFLGTQRAAVDGDLLRRNQITKIVCVGTPRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDMNCRLTASDGLPALLMAHATFR 698
            +++Q +    QHP  +G       +   LFLG   AA D   L +N+I  +V +GT        + L + +LD+  E LL  F  C  F+E  + +    LV+CV+ QSRS  + VAYLM+++ + L +A ++++ A+P I+INPGF  QL L++    R+        +  AHA  R
Sbjct:    7 IVSQLLRRQQQHPLLEGFPTAARIDDLPLFLGEAGAAQDSAFLDKNEIKAVVALGTGNLTAKPCDVLLIDILDMEDELLLPHFGQCIEFLEQHLNALNAALVHCVYGQSRSAAICVAYLMQKRNLTLLEAYDIVQRARPCISINPGFLRQLELFQ----RMQNDPDTMGVTSAHAELR 180
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BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: A0A6G0WXD5_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXD5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.890e-22
Identity = 70/218 (32.11%), Postives = 105/218 (48.17%), Query Frame = 3 
Query:  237 EQAKLFLGTQRAAVDGDLLRRNQITKIVCVGTPRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDMNCRLTASDGLPALLMAHATFRWFLFACQVRKYGECLPLDTENWEKRGRDDTQTMAGGMQATTRSYRCKACRASLFYGRNVIDHLH 890
            E  +LF+G+  AA D      + I  ++ +GT    P   E L + +LD+    +L  FD C +F++   R G+  LV+CV+ QSRS T+ VA++M    ++L  + + ++TA+P I+IN GF AQL L++ M C+L           AHAT+R    A Q R     L LD  +              G   T +   CK C   L    N + H H
Sbjct:   33 ETFQLFIGSADAASDPSTTAEHGIHSVISLGTGPLAPPPVETLCIDILDMEDAFILEHFDTCFAFLKEQARIGKSTLVHCVYGQSRSATICVAFVMLIDRMSLEASYDRVQTARPCIHINRGFLAQLELFQAMQCQLVGVSS------AHATYRTMATA-QRRSRDRLLALDDNSLH------------GAPGTAKRIYCKKCNFHLCSHDNAVFHAH 231
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BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: A0A1R1XV46_9FUNG (Protein-tyrosine-phosphatase n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XV46_9FUNG)

HSP 1 Score: 110 bits (274), Expect = 3.210e-22
Identity = 105/396 (26.52%), Postives = 161/396 (40.66%), Query Frame = 3 
Query:  249 LFLGTQRAAVDGDLLRRN--QITKIVCVGTPRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDM---------------NCRLTASDGLPALLMAHATFRWFLFACQVRKY---GECLPLDTENWEKRGRDDTQTMAGGMQAT----------------TRSYRCKACRASLFYGRNVIDHLHPVVLAANETTYESIARYGDGISWSAARDAASAGSTVGPMNSTARKAKRGSLRNGRSESDNNGSASRSPTTSDTCTSVFTEVLPWIGMVDASGRLSGAESLRKITCPGRNGMGCGSKIGAWNLQGTTCSCGRTVKPSVQFTLSRIEV 1328
            L + T  A +D +L  RN   I  I+   TP  HPN+F Y+ +  +D+P+ NLL  F+    FI   ++  + +L++C   QSRS T+  AY+MK++ + + +A+E I+  +P  + N GF  QL LY D+               N     S  L  ++ A    +  + A   +K    G  +    +N      D ++  + G Q                   +  RCK CR  LF   N+I H      + N    ES                          N T  K       N R + + N    R       CTS FTE + W+     +G  SG     +I CP      C SK+G +N  G+ CSCG+ + PS +   S I++
Sbjct:   26 LTISTAEAEID-ELKARNIENILSILLDFTPS-HPNDFNYMVISEMDLPTVNLLQYFNQTYDFISNSVKQNKKILIHCAAGQSRSITIAAAYIMKERNIKVHEALEYIKKKRPQAHPNRGFINQLRLYYDLEFQIDPQNSIYRKFVNSLAQKSGNLHQIIPADDPEKARVSASNAQKSSGNGVTVSSGAQNSSAIDGDSSEVASSGSQQAGSGANMLEAISKVMNQPKMARCKKCRRHLFTADNIIPHEPKKADSVNRIIDES-------------------------GNVTYIKKNMRDFSN-RPDHNRNEKTGRQ-----LCTSAFTEPMEWM---QTAGENSG-----RIVCPT-----CQSKLGQYNWSGSQCSCGKWITPSFKILYSHIDL 375
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BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: A0A8K1FGI6_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGI6_PYTOL)

HSP 1 Score: 105 bits (261), Expect = 3.790e-22
Identity = 54/159 (33.96%), Postives = 91/159 (57.23%), Query Frame = 3 
Query:  162 DLINQRMSAICQHPGGDGLHLVLLSEQAKLFLGTQRAAVDGDLLRRNQITKIVCVGTPRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRG-VLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDM 635
            D++ Q ++    HP  D + +        LF+G  +AA D + L++++I  +V +GT R  P   + L V +LD+  + ++  F+ C  F+ + +  G+  VLV+CV+ QSRS  V VAYLM  K +++ +A   ++ A+P I IN GF +QL L+  M
Sbjct:    8 DVVEQLLARQRAHPSVDAVPIAAKIRDVSLFIGEAKAAQDAEFLQQHKIAHVVSLGTGRLSPASCDVLLVDILDMEDQLIVCHFNECIEFLRSALADGKSAVLVHCVYGQSRSAAVCVAYLMACKQMSMLEAYNAVQQARPCIYINLGFLSQLQLFERM 166
[Close]
BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: A0A2P4YJ68_9STRA (Protein-tyrosine-phosphatase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ68_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.490e-22
Identity = 73/239 (30.54%), Postives = 105/239 (43.93%), Query Frame = 3 
Query:  198 HPGGDGLHLVLLSEQAKLFLGTQRAAVDGDLLRRNQITKIVCVGTPRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDMNCRLTASDGLPALLMAHATFRWFLFACQVRKYGECLPLDTENWEKRGRDDTQTMAGGMQATTRSYRCKACRASLFYGRNVIDHLHPVVLAANE 914
            HP  +G         + LFLG   AA D   L  N I  ++ +GT        E L + +LD+  E LL  FD C +F++  + S  GVLV+CV+ QSRS  + VA+ M  +   L +A  +++ A+P I+INPGF  QL L+  M          PA    HA  R  +   Q  K G    + T    + G                S  C+ C   L   RN + H+ P    +N+
Sbjct:   13 HPLLEGFPTAARIGDSHLFLGEAEAAQDAAFLESNNIQAVIALGTGNLTVKPCEVLLIDILDMEDELLLPHFDECIAFLKKNLVSEGGVLVHCVYGQSRSAAICVAFQMATQDKTLLEAYNVVQQARPCISINPGFLRQLELFERMGNDPEVMGNTPA----HAELRTMMAQRQRMKTGVADIIATPQLTRPGN---------------SICCRKCNYVLCTTRNQVSHISPDTAISND 232
[Close]
BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Match: UPI000625ED53 (dual specificity protein phosphatase MPK-4 n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI000625ED53)

HSP 1 Score: 107 bits (266), Expect = 2.630e-21
Identity = 73/218 (33.49%), Postives = 112/218 (51.38%), Query Frame = 3 
Query:  249 LFLGTQRAAVDGDLLRRNQITKIVCVGTPRFHPNEFEYLE------VPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCVFAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYRDMNCRLTASDGLPALLMAHATFRWFLFACQVRKYGECLPLDTENWEKRGRDDTQTMAGGMQATTRSYRCKACRASLFYGRNVIDH 884
            LFLG   AA D + L+  +IT I+ V +    P + + L       + V D+P E+LL  FD    FI+  + SG  +LV+C F  SRS T+V+AY+MK++G++   A E ++T +  +  NPGF+AQL LYR+MN  +  ++      +    +R  + A +VRK    LP    +  K    D        + T   YRCK CR  +    N++ H
Sbjct:   37 LFLGNLTAATDVEWLKETKITHILTVDSCPL-PRKIQVLPDLILKYIQVTDMPREDLLTYFDDSYQFIQNALESGGRILVHCYFGVSRSATIVIAYIMKKQGISYYSAFETVKTKRCFVGPNPGFEAQLKLYREMNFSIDNAN------VHFKMYRLQIAADKVRK-ARILPQCCSDIVK---PDPALTTVRPEPTV--YRCKKCRRIVACASNILPH 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1082.529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF1_ECTSI3.560e-9846.34Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A4P9ZV35_9FUNG5.340e-2628.32Protein-tyrosine-phosphatase n=1 Tax=Dimargaris cr... [more]
A0A225VA18_9STRA4.330e-2531.84Protein-tyrosine-phosphatase n=1 Tax=Phytophthora ... [more]
A0A3R7GL67_9STRA3.760e-2329.55Protein-tyrosine-phosphatase n=2 Tax=Phytophthora ... [more]
A0A3F2RFB4_9STRA2.310e-2233.15Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A6G0WXD5_9STRA2.890e-2232.11Protein-tyrosine-phosphatase n=1 Tax=Aphanomyces e... [more]
A0A1R1XV46_9FUNG3.210e-2226.52Protein-tyrosine-phosphatase n=1 Tax=Smittium culi... [more]
A0A8K1FGI6_PYTOL3.790e-2233.96Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A2P4YJ68_9STRA9.490e-2230.54Protein-tyrosine-phosphatase n=1 Tax=Phytophthora ... [more]
UPI000625ED532.630e-2133.49dual specificity protein phosphatase MPK-4 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1082contigH-paniculata_contig1082:19342..25383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.0
Seed ortholog evalue3.8e-85
Seed eggNOG ortholog2880.D7FJF1
KEGG rclassRC00478
KEGG koko:K00472,ko:K14819
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
Ec32 ortholog descriptionDual specificity phosphatase, subgroup, catalytic domain
Ec32 orthologEc-14_006110.1
EC1.14.11.2,3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Exons3
Model size2385
Cds size1155
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1082.529.1prot_H-paniculata_contig1082.529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1082 20694..25204 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928787.0718124-UTR-H-paniculata_contig1082:19341..202401622928787.0718124-UTR-H-paniculata_contig1082:19341..20240Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1082 19342..20240 -
1691480619.6021535-UTR-H-paniculata_contig1082:19341..202401691480619.6021535-UTR-H-paniculata_contig1082:19341..20240Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1082 19342..20240 -
1622928787.0842957-UTR-H-paniculata_contig1082:20541..206931622928787.0842957-UTR-H-paniculata_contig1082:20541..20693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1082 20542..20693 -
1691480619.6146605-UTR-H-paniculata_contig1082:20541..206931691480619.6146605-UTR-H-paniculata_contig1082:20541..20693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1082 20542..20693 -
1622928787.1221147-UTR-H-paniculata_contig1082:25204..253831622928787.1221147-UTR-H-paniculata_contig1082:25204..25383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1082 25205..25383 -
1691480619.6425102-UTR-H-paniculata_contig1082:25204..253831691480619.6425102-UTR-H-paniculata_contig1082:25204..25383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1082 25205..25383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928787.0961375-CDS-H-paniculata_contig1082:20693..215231622928787.0961375-CDS-H-paniculata_contig1082:20693..21523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 20694..21523 -
1691480619.6235058-CDS-H-paniculata_contig1082:20693..215231691480619.6235058-CDS-H-paniculata_contig1082:20693..21523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 20694..21523 -
1622928787.108216-CDS-H-paniculata_contig1082:24879..252041622928787.108216-CDS-H-paniculata_contig1082:24879..25204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 24880..25204 -
1691480619.6328435-CDS-H-paniculata_contig1082:24879..252041691480619.6328435-CDS-H-paniculata_contig1082:24879..25204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 24880..25204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1082.529.1

>prot_H-paniculata_contig1082.529.1 ID=prot_H-paniculata_contig1082.529.1|Name=mRNA_H-paniculata_contig1082.529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
MSAICQHPGGDGLHLVLLSEQAKLFLGTQRAAVDGDLLRRNQITKIVCVG
TPRFHPNEFEYLEVPVLDIPSENLLVRFDACASFIETGMRSGRGVLVNCV
FAQSRSPTVVVAYLMKQKGVALADAMEMIRTAQPTININPGFQAQLMLYR
DMNCRLTASDGLPALLMAHATFRWFLFACQVRKYGECLPLDTENWEKRGR
DDTQTMAGGMQATTRSYRCKACRASLFYGRNVIDHLHPVVLAANETTYES
IARYGDGISWSAARDAASAGSTVGPMNSTARKAKRGSLRNGRSESDNNGS
ASRSPTTSDTCTSVFTEVLPWIGMVDASGRLSGAESLRKITCPGRNGMGC
GSKIGAWNLQGTTCSCGRTVKPSVQFTLSRIEVA*
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mRNA from alignment at H-paniculata_contig1082:19342..25383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1082.529.1 ID=mRNA_H-paniculata_contig1082.529.1|Name=mRNA_H-paniculata_contig1082.529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6042bp|location=Sequence derived from alignment at H-paniculata_contig1082:19342..25383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACTTTAGTCATAGCCCACCCCATCCACCATAAGGAAGGTGCGACTTGG
CACCCACCCAATCTCAGAGCTGCTGGTCGTGCTTTCACCCGTTAATTTGA
CGCTTCGCAACAGGAAGGCTGCTACTTCCATCGCTCACATCCCTGATTTA
CCGGACTACTTGACTTGATCAACCAACGTATGTCAGCAATATGCCAGCAT
CCAGGCGGCGATGGCCTTCATCTCGTATTGTTGTCGGAACAAGCTAAGCT
ATTTCTAGGGACTCAGCGAGCTGCGGTCGATGGTGACTTGTTGCGGCGCA
ATCAAATAACCAAAATCGTGTGCGTTGGCACGCCGCGGTTTCATCCCAAC
GAATTTGAATACCTCGAGGTACCGGTGCTGGATATACCTTCGGAGAACCT
ATTGGTCCGTTTCGACGCGTGCGCTTCCTTCATTGAAACTGGAATGCGGA
GTGGGCGAGGGGTTCTGGTGAATTGCGTTTTCGCACAAAGCAGAAGTCCG
ACAGGTGCGTAAATGGCCAACTGCTGAGTAGTTTTTGACGCACTCGTCCT
CGGACATAAAGGGGTACACTATTGCCGTGGAAAGTGAACAAAAAGGTGTA
AACGATAGACGAAAACAGGGGTTTCCTTATCATAGTAGAAGCGACCGGGT
ACACTCTCCCAAACCGCGGATAGAAAGGGGTATGAGGTCACCAACACTCC
CTATCCCCGTAGCCATGTTACCCACGTTGTTTTTCTCCTTTGATAGGGTA
GGGGATGAGAAGAAGACTGGTGCCCAGACGCGTGAAACTCCCTCCCTGCG
ATATGTATACGTGAAACAAATGATTCAGCAATGGCAATACATTTTAGGGT
GATGTAATAGGAAAGGGTATACCCTGTCGTAGGAACTGAATTCGGACTTC
CTTTGTTGTAGGTGTAATGCAGGCAGAAGTGCCACTGGAAACGAGAGTTA
GGGCGTGGTGTATCAAATAAGAAACGAAAACAAAGAAAGAAACGGAGCTA
TAATCGGCAGATGTTCCGCCGCTGGCGTGAAACGCAACAAAGGTATTTTC
ATCCTCCAAAAACCCTCACCAAAAGGAAGGAAAGTGCAAAAAAGAAAAAT
TGATTTAAAGCAGCGATAAAGCGCAAAATATGGCAGAACACAAATCAGTG
CCCTATTTTTGACCACTTCATGTATGTATGTTCATGATTGTGACACGAGT
CATTGTGAAACACGTGCCGATGCTTTCATCTCATACAGCACCACCTACAG
ACAATGCAAGTAGACGCCCAGGACCCCGATGTGTATCCACAGTTCACTAG
GACATGGGATGCTTTAGTCCAGTGCAATTAGTTCAGTATTGATTAAACAG
CAACGATCGTTGCGAAAAATTGAGCGCATTTTTTTCCATAAACCGTGCAG
GTGGCCACCGTTCTGACTGTCTGTTGTTGTCATACAGTATGAGACCGCTG
ACAAGAAATCATCCCATAGGATTTTGAGACTCAATTTTACTAAAGCATAA
GAAATCCGATTGAAGAAATGAGGCTCGAGTTGTGGCCTCAAACTAATTCT
TTTATACGAGTGAGAAACAACGCTGTTCGTGATCATCGCCAAAAGAAGGT
TTTGAGCCGCACCCGAAATAAGAGTGTCTTATAATCGGCCCCATACTGTA
CACAAGTACGTCTTCTTCAATTCTGGACAACCGACACCAAGCACATCGTA
CGTAGTCAAATTAGAACTACCTCTCGGGTTATCCATCATTGTTTTGCAGG
CAGTGTAGCTCCTGTTTTCGGTGTTTGAACAGTTTCGTTGATGGGTATTG
TTTTTCCGTTCGTCGATGTCACTTATTTTTTCATACCGCGTTTTCGCTCC
GACCTTTTGACCCTAGGTCACAAAAGAATTTCGTTTTCGTTTTTTATTCT
GATAAGTTATGCCCTTAGTCACGAAGGGCCAAAAGCAAATTTGAGAGTTC
CAAAGATGACTGAATAAGGTGGGCGAGGGAGGTGAGGTGTTCCAACTCTC
CCTCCCATCGGCGTATCAGAGTATTATTTTACACCTGGAAGGACGAACCG
CCTGCTCTCTATAAGACAATCTCCCGAAGATACGAGTCTCTCGCAGACCA
TATGCCAACTTCTTGGATTGATCTGGGTCATTCTACTCTCAATCCCTATG
GGACTGGGTATCATTTTGAAACGCCATCTTATCGATACAAAAAACGCAAT
GGAACATAACGAAGCGGAGGTCGTATGGACATGAAAACCTGAAACTATCT
CTGAGAAAAGCCGAAGCTGTTGTTGATCACCGCAATGAACGTCGAACTCG
ACATCCAGCGAGAGTGATTTGTCAGGTTGTACGATATTTGGATCCGTTTT
GTATAATGAAGACCTGAGCAGTGGCAGCAGACACGTTTTCTACGAGACAT
GGCATGTCATCGCTTGACTGGTGGATCGATTACCCGTTCAGTGAATGGCG
ATCGGTTTCAGGTGTCCTATGCTGTGTTCACCAAAATAGCGAGCATCAAA
ACTGATGTCGCTGACATAGATCTATGTCGCCAGCACAGATTTCCCCCCAT
ATATAGCCCCTTAGCCAAATTGGGCAGCTTTTGCAGGGATTCCGCACAGG
CCCCCAAAGCCTGTACGCCACCTTACCAAGTGTGCGCGATGATCTCCACC
TGTAATTGCTAGGCCAAAAAGCGCGATGAAACGTTTTTTTTTATTTCTTC
ACACTAGATCAGTATTTTTCCATGTCGCGTTGGTCACCCCGCAAGAAAAA
CGTTTGTATCCCAGATTTTTTTCGCGGATTTATGGCGCTGTATTCTCCAA
AGGGTTAATCATCCGTTATACACCGACATTCTGCTTTATTTATCTTGCTC
TCACTCTGCACACCAACTCCGTAACCATAATACATGCGAGTAGATTCGGA
TCCATTCTTTCGATGCTAGGATGTTCACCTTTTCTGAAGTAGGTTCATCC
GATCCAGGGCATTTTATAGTGAAAGCCTAGCCTCCGCTTTGACTGTTTCT
CCGCATAGTTGTTTCTCATTTTACGACCGATCCTCAGATCAGTTTCGAAA
CCGCTGTTACGTAGGCACAGAATCACGCCTTCGACAGTTGAGTTTCCAAC
AATGTCTATTTTGGACAGTTACGGGTACGCCAGCACATGGCCACACCCAA
CATGTGTAGACGGCGCTAAAATGATTGATTGCCCACTGAACACCAACTGG
TGCTTCTTGTCTACACGCCCATGAAAAAATAGGGGAAGATAACAGGAGAA
ATCAGGCGCAGCAGTGCAACACAGTATGGGATACTTCCAAGGAGGGTTTC
CCGTACCCTAAAGTGTCCACAGCACGCGAGGTACACTCCTTCGATTCTAT
TCGTTTTGGGCATAATATTTTCTTGTCCATTTTTTGCCGAACCTGTCCAT
TGTGGTACCTGTTTCTGCCCACTGCTGTACCCTGCACTGTCCACTGTTGT
AGTCGAGCTGAAGACATGTATATTGTGGTCATTAGTAACAACTTGGTTGC
TGACGTTAGCGACCCGCAGCATGTACGTAAGACATAAGAAGCATGTTTGG
TGGGCATACGTAGGGATTATTATCCAATATCAACATGTTCTCGCTCACCA
CTCTCACTTACTCCGTTCATTGCGCCCACTCCCACTACCTGGCACGTTTC
TCCTTCAGCTGAGGCTTACAATATATAGAACCGTCTATCTAGGACATGCA
TGCACATCTCCCTTCGTGTGCCATTCAAGCAAGGGTGTTTCTCCCGCGGC
CTACTCGACGAATACTCAACAACTCGCGCTCACTCTTTCGACATCATCTC
CTGAAGACACTCGCCGTCCCTATCTCTGTCTTGCGTTTCTCTGTCTCCGG
TCCTTTTAAGTCGTCGTTGCCTATTTGATGAAGCAGAAGGGCGTTGCGCT
GGCGGATGCTATGGAGATGATCCGTACCGCCCAGCCGACCATTAATATCA
ACCCTGGGTTCCAGGCGCAATTGATGCTTTATCGAGATATGAACTGCAGG
CTTACCGCAAGCGATGGACTACCGGCCTTGCTCATGGCACACGCTACCTT
CCGCTGGTTCCTTTTCGCCTGCCAAGTAAGGAAATATGGTGAATGCCTTC
CGTTAGATACTGAAAACTGGGAGAAAAGAGGACGAGACGACACTCAAACG
ATGGCAGGGGGTATGCAGGCCACGACAAGGAGCTATCGATGCAAGGCGTG
CCGCGCATCCCTTTTCTACGGTCGTAACGTGATCGACCATTTGCATCCTG
TTGTGCTTGCCGCCAACGAGACCACTTACGAATCCATTGCCAGATATGGA
GATGGAATTTCCTGGTCAGCGGCAAGAGATGCCGCCTCCGCTGGATCCAC
GGTTGGACCAATGAACTCAACGGCCCGGAAAGCGAAGCGGGGCTCCCTAC
GTAATGGCCGTAGTGAATCTGACAACAATGGATCTGCCTCACGATCCCCG
ACGACAAGTGATACTTGCACCTCGGTATTTACAGAAGTTTTGCCATGGAT
AGGAATGGTAGATGCCAGTGGACGGTTATCCGGAGCCGAGAGCTTGCGCA
AGATAACCTGTCCAGGCAGAAATGGAATGGGTTGTGGCAGCAAGATCGGA
GCGTGGAATCTGCAGGGCACGACTTGTAGTTGCGGTCGCACGGTCAAGCC
TTCCGTGCAGTTTACGCTTAGCCGGATTGAGGTTGCCTGAAGGCAATGGT
GTACCAGTCTCGCCTCGAGAGCCAGCTGGCTCGTGACCTTGCTGTTCTCT
AACGGTGTCGCAACGATGGCGAGCGCTTGCGATCTTTGGGCTAATCATCG
TGTTAGAGGCCGGATGACACCCTTATTGCTTCTTGTTGCAAGGTGAAAGG
TGGGATGCTGATTAACTAATTCACTCCTGCCCTTCGCTCTTCAGCTCTGT
TGCTTGATAATGAGGAAAACAACGAAAGTTTACCTATTATCCGATCGGTA
GAAGTATAAACTGATATTAGTATAATCCTGGCGACCCCGTCGGACTTGGG
TTATATGGATTTGCCTAGCTAGGTTAGCAAGTTCTCGCAGTGCATAACTT
TCCGAGAGTCTCACATTTGCGTCGCAACAATATTGACAGCCCTACTGCTC
ACACGTTCGCCTGCTCCGCTTCTTTGTACTATTTCGTGCACAGGACGCAA
TGTATATCGACGCAAATCTCGGGAAAATGGGCAGAATATCGAGGACCCAT
GTACTGCTCGTCGACTGATTCGCCTAGCTTGTAGTAGCATGCGCCGCGTC
ATGAATACTGTCAAATGACTGCCCTGGCAGATTGCCTGTGTTGCGCCACC
CTCCAATGGACACTTGTACAACCAAAGTTGTCAGGGAGGGGAGAGAGAGA
GGACAGAATTGTGTAGATCAGAAGGTTTGTTCAAGGAGTAATGATGCAAT
TCACGTTGTCATGTTTTGAGGGGTAGCACTGTATGTTGTTCGTCTGGAGT
CACTTCTGACTGCAACCGTTGGAATGTGTGGGCTGCATCACTCACTTTTT
ATATGTTGTCGCTCGGGTTTATGTCTGTAGGTTGAGCTGAGTTCTGTTAT
CTCTTCATGTATATACTCTGTTTCACACACATAGATCAGATCGATTAGAT
TGTCCACGGCTCGTACGGATCATATCGTGGAGCTTTCATGTGGGTGGGTC
GTTTGCAAGGATACATTGTTATAATACTCGAGTCTAGTTAGGGCTATATC
AGGTTTACGGGCTGCTTCTAAGAACAAAGGCCGATTTTCGCGAGAGCCTT
CGCTAGCCGGTCGAATGTCGTGAAATTGAATGTATGCCAAGTCAACAAGT
CACCACGCCGTTGCAGCTACAAAAGCGTTAGCCATAAATGTTGTTGGGCT
TATATCATTGATGCTATGGTGGTATACTTGCAGCCTGATCAACTACTGTC
AACGGGGATGATACTCAAGACCCTTCTCTTTTTCATTTGAAGCACAAAAA
AGCGCTGCTTTTGTTTCGTTGCAGTTGATATCAGCCTTAGGGTCGTTTCT
TCATTTACACGTATTGTGGTGTTTTATCAGGGGTTGTTTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1082:19342..25383-

>mRNA_H-paniculata_contig1082.529.1 ID=mRNA_H-paniculata_contig1082.529.1|Name=mRNA_H-paniculata_contig1082.529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig1082:19342..25383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGCAATATGCCAGCATCCAGGCGGCGATGGCCTTCATCTCGTATT
GTTGTCGGAACAAGCTAAGCTATTTCTAGGGACTCAGCGAGCTGCGGTCG
ATGGTGACTTGTTGCGGCGCAATCAAATAACCAAAATCGTGTGCGTTGGC
ACGCCGCGGTTTCATCCCAACGAATTTGAATACCTCGAGGTACCGGTGCT
GGATATACCTTCGGAGAACCTATTGGTCCGTTTCGACGCGTGCGCTTCCT
TCATTGAAACTGGAATGCGGAGTGGGCGAGGGGTTCTGGTGAATTGCGTT
TTCGCACAAAGCAGAAGTCCGACAGATGTCAGCAATATGCCAGCATCCAG
GCGGCGATGGCCTTCATCTCGTATTGTTGTCGGAACAAGCTAAGCTATTT
CTAGGGACTCAGCGAGCTGCGGTCGATGGTGACTTGTTGCGGCGCAATCA
AATAACCAAAATCGTGTGCGTTGGCACGCCGCGGTTTCATCCCAACGAAT
TTGAATACCTCGAGGTACCGGTGCTGGATATACCTTCGGAGAACCTATTG
GTCCGTTTCGACGCGTGCGCTTCCTTCATTGAAACTGGAATGCGGAGTGG
GCGAGGGGTTCTGGTGAATTGCGTTTTCGCACAAAGCAGAAGTCCGACAG
TCGTCGTTGCCTATTTGATGAAGCAGAAGGGCGTTGCGCTGGCGGATGCT
ATGGAGATGATCCGTACCGCCCAGCCGACCATTAATATCAACCCTGGGTT
CCAGGCGCAATTGATGCTTTATCGAGATATGAACTGCAGGCTTACCGCAA
GCGATGGACTACCGGCCTTGCTCATGGCACACGCTACCTTCCGCTGGTTC
CTTTTCGCCTGCCAAGTAAGGAAATATGGTGAATGCCTTCCGTTAGATAC
TGAAAACTGGGAGAAAAGAGGACGAGACGACACTCAAACGATGGCAGGGG
GTATGCAGGCCACGACAAGGAGCTATCGATGCAAGGCGTGCCGCGCATCC
CTTTTCTACGGTCGTAACGTGATCGACCATTTGCATCCTGTTGTGCTTGC
CGCCAACGAGACCACTTACGAATCCATTGCCAGATATGGAGATGGAATTT
CCTGGTCAGCGGCAAGAGATGCCGCCTCCGCTGGATCCACGGTTGGACCA
ATGAACTCAACGGCCCGGAAAGCGAAGCGGGGCTCCCTACGTAATGGCCG
TAGTGAATCTGACAACAATGGATCTGCCTCACGATCCCCGACGACAAGTG
ATACTTGCACCTCGGTATTTACAGAAGTTTTGCCATGGATAGGAATGGTA
GATGCCAGTGGACGGTTATCCGGAGCCGAGAGCTTGCGCAAGATAACCTG
TCCAGGCAGAAATGGAATGGGTTGTGGCAGCAAGATCGGAGCGTGGAATC
TGCAGGGCACGACTTGTAGTTGCGGTCGCACGGTCAAGCCTTCCGTGCAG
TTTACGCTTAGCCGGATTGAGGTTGCCTGATCGTCGTTGCCTATTTGATG
AAGCAGAAGGGCGTTGCGCTGGCGGATGCTATGGAGATGATCCGTACCGC
CCAGCCGACCATTAATATCAACCCTGGGTTCCAGGCGCAATTGATGCTTT
ATCGAGATATGAACTGCAGGCTTACCGCAAGCGATGGACTACCGGCCTTG
CTCATGGCACACGCTACCTTCCGCTGGTTCCTTTTCGCCTGCCAAGTAAG
GAAATATGGTGAATGCCTTCCGTTAGATACTGAAAACTGGGAGAAAAGAG
GACGAGACGACACTCAAACGATGGCAGGGGGTATGCAGGCCACGACAAGG
AGCTATCGATGCAAGGCGTGCCGCGCATCCCTTTTCTACGGTCGTAACGT
GATCGACCATTTGCATCCTGTTGTGCTTGCCGCCAACGAGACCACTTACG
AATCCATTGCCAGATATGGAGATGGAATTTCCTGGTCAGCGGCAAGAGAT
GCCGCCTCCGCTGGATCCACGGTTGGACCAATGAACTCAACGGCCCGGAA
AGCGAAGCGGGGCTCCCTACGTAATGGCCGTAGTGAATCTGACAACAATG
GATCTGCCTCACGATCCCCGACGACAAGTGATACTTGCACCTCGGTATTT
ACAGAAGTTTTGCCATGGATAGGAATGGTAGATGCCAGTGGACGGTTATC
CGGAGCCGAGAGCTTGCGCAAGATAACCTGTCCAGGCAGAAATGGAATGG
GTTGTGGCAGCAAGATCGGAGCGTGGAATCTGCAGGGCACGACTTGTAGT
TGCGGTCGCACGGTCAAGCCTTCCGTGCAGTTTACGCTTAGCCGGATTGA
GGTTGCCTGA
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