mRNA_H-paniculata_contig204.5287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig204.5287.1 vs. uniprot
Match: D8LEM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM5_ECTSI) HSP 1 Score: 324 bits (831), Expect = 1.180e-90 Identity = 267/635 (42.05%), Postives = 323/635 (50.87%), Query Frame = 1
Query: 46 RVTGRDQSQTLGELLLFILQTFSKFF----------------WGISDPA-----DGQGVG-EASCGGAAMSAEATAGNMHGLNSLSGD-GGGVEEAXXXXXXXXXXXXXASCGD--GKXXXXXRQGGGLNSLGEVASVSVEPGAGLSPSAFGACSSTAASAAVENVEPESP-TTATGGDGGPTSFNASVCPGGGPATMSARGGDEWPQL---SASPGGRRRRLSELSPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVEGAGVWGGHQGGAAVLSRLAWDLDSPVS---GGRVNTRVEVAATTRSSEAPQGPARALRFTDDSEEVGGRGATTTASGPPLRQAPAVENGDMSPLPSLPKK--GDMFDEWTPSVSVSVPVVSPEPASGTFLPPES----EIAEGADARLAAVAAAAAVDPNQPGPA-PTTSARGDWAWFGDAPPGTPGLPALALKEAARCLCNLYACHGAPAAGGEAAAAADLPERLQPLATIGSILCQIWPPAAAILMRRLLGTWPTGSSKREVAYLRLIAGVTCAAPSVAVMCPGSRVPLMLFRRMAQCINSPNTKVAQEAAYLVQADFIVMSYLAPNRALMDLVTNALCANRGHWNADVRNASDQAFEVMLDFL 1833
RVTGRDQSQTLGELLLF+LQTF +FF W DP DG G G CG AA +AE A ++ G++ +G GG + G R+ G G A+ + + G G + AS E SP PT+ NA+ GG PA S R WP L S SP +R+ E + G GVWG QG A+ LAW+ ++ + GG + T + A G ARALRFT E+VGG T +G L A E SP+ S GD F+ + + + E S T PE E E D + + A + G P SA G A G LPA+ALKEA R LCNLYA HGAPAAG EAAA+AD PERLQPLA GS LCQ+WPP++A+L+RRLLGTWP GS++REVAYLRLIAGV CAAP + V+CPGSR+PLMLFRR+A+CINS NTKVAQEAA+LVQADFI+M YLAP+R LMDLVTNALCANR HW+ADVRNASDQ F++MLDFL
Sbjct: 582 RVTGRDQSQTLGELLLFVLQTFPRFFLGMVPVDEAGGQQQGVWHHGDPGATFSGDGSGYGCVEDCGVAAQAAEGCA-DVGGVDVHAGVCGGNASSSGFVSPSQAWGSNGPGIGSPSSAEITENRRAAGDQEDGPAAAAAADGGDQCKSGCDGCDDNDGASLGEEGGLVGSPGXXXXXXXXXPTARNAASS-GGDPAPASERCALAWPSLASGSPSPATGQRQNEEGVGNKQEPPWSPAWATAGVRSIEDVPLEEGAGLAVNRGSCG----DGVWG--QGMAS--KDLAWESEAGLGEEVGGDLRTATDGVA---------GAARALRFTAQEEDVGGDAEVTGDAGNWL--ASGRECSRESPVASAGAALAGDPFESGAGRLGLDEWPTAQEAKSST---PEKISAVEPVERMDGASVSGSRGDATGGQEAGTQQPLPSATGCTAAGGGGLALELDLPAVALKEATRSLCNLYASHGAPAAGAEAAASADAPERLQPLALAGSTLCQLWPPSSALLLRRLLGTWPAGSARREVAYLRLIAGVACAAPPLGVVCPGSRLPLMLFRRLAKCINSSNTKVAQEAAFLVQADFILMVYLAPDRRLMDLVTNALCANREHWSADVRNASDQTFDLMLDFL 1192
BLAST of mRNA_H-paniculata_contig204.5287.1 vs. uniprot
Match: A0A2D4BM86_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM86_PYTIN) HSP 1 Score: 82.8 bits (203), Expect = 1.890e-12 Identity = 42/126 (33.33%), Postives = 69/126 (54.76%), Query Frame = 1
Query: 1456 PPAAAILMRRLLGTWPTGSSKREVAYLRLIAGVTCAAPSVAVMCPGSRVPLMLFRRMAQCINSPNTKVAQEAAYLVQADFIVMSYLAPNRALMDLVTNALCANR-GHWNADVRNASDQAFEVMLDF 1830
P A+ L+RRLL WPT +E+ +R+IA V +P + + +P+ +F R+A+CI SP+T+VAQEA F ++ +L + +++ A N HWN +R S+ F+ LD+
Sbjct: 547 PHVASDLLRRLLRCWPTRFPTQEIVAIRMIARVIMTSPPLHSIDGAEELPIQIFTRLAKCITSPHTQVAQEALAFTGCQFAMVHFLGEYEDIYKVISEAFHQNATSHWNEVIRTTSEGHFDRALDY 672
BLAST of mRNA_H-paniculata_contig204.5287.1 vs. uniprot
Match: K3WXG7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WXG7_GLOUD) HSP 1 Score: 82.4 bits (202), Expect = 2.630e-12 Identity = 43/128 (33.59%), Postives = 73/128 (57.03%), Query Frame = 1
Query: 1456 PPAAAILMRRLLGTWPTGSSKREVAYLRLIAGVTCAAPSVAVMC--PGSRVPLMLFRRMAQCINSPNTKVAQEAAYLVQADFIVMSYLAPNRALMDLVTNALCANR-GHWNADVRNASDQAFEVMLDF 1830
P L++RLL WP+ +EV +R++A V ++P + M P + + + +F R+A+C+ SP+T+VAQEA F+++ +LA + ++T A AN HWN VR+ S+ F+ LD+
Sbjct: 582 PDVTVQLLQRLLANWPSKYPSQEVVAIRMVARVIMSSPPLHTMMNGPSANLHVKVFTRLARCVQSPHTQVAQEALAFTGCQFVMVHFLARYDDIYRVITEAFHANTVHHWNEAVRSTSEGHFDRALDY 709
BLAST of mRNA_H-paniculata_contig204.5287.1 vs. uniprot
Match: A0A368RB10_SETIT (Serine/threonine protein phosphatase 2A regulatory subunit n=2 Tax=Setaria TaxID=4554 RepID=A0A368RB10_SETIT) HSP 1 Score: 62.0 bits (149), Expect = 2.530e-6 Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 1456 PPAAAILMRRLLGTWPTGSSKREVAYLRLIAGVTCAAPSVAVMCPGSRVPLMLFRRMAQCINSPNTKVAQEAAYLVQADFIVMSYLAPNR-ALMDLVTNALCAN-RGHWNADVRN 1794
P A+ ++ LL WP +S++EV +L I V A V + ++LFRR+A CINS + +VA+ A ++ D I+ S +A NR A++ +VT AL N + HWN V N
Sbjct: 182 PKLASSVILGLLRYWPITNSQKEVMFLSEIEEVLEATNMVEFQ----KCMVLLFRRIAHCINSSHFQVAERALFMWNNDHII-SLVAQNRQAIVPIVTPALEENIQNHWNVSVLN 291
BLAST of mRNA_H-paniculata_contig204.5287.1 vs. uniprot
Match: K3XGX4_SETIT (Serine/threonine protein phosphatase 2A regulatory subunit n=10 Tax=Panicoideae TaxID=147369 RepID=K3XGX4_SETIT) HSP 1 Score: 62.0 bits (149), Expect = 4.150e-6 Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 1456 PPAAAILMRRLLGTWPTGSSKREVAYLRLIAGVTCAAPSVAVMCPGSRVPLMLFRRMAQCINSPNTKVAQEAAYLVQADFIVMSYLAPNR-ALMDLVTNALCAN-RGHWNADVRN 1794
P A+ ++ LL WP +S++EV +L I V A V + ++LFRR+A CINS + +VA+ A ++ D I+ S +A NR A++ +VT AL N + HWN V N
Sbjct: 327 PKLASSVILGLLRYWPITNSQKEVMFLSEIEEVLEATNMVEFQ----KCMVLLFRRIAHCINSSHFQVAERALFMWNNDHII-SLVAQNRQAIVPIVTPALEENIQNHWNVSVLN 436
BLAST of mRNA_H-paniculata_contig204.5287.1 vs. uniprot
Match: A0A6D2JL22_9BRAS (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JL22_9BRAS) HSP 1 Score: 59.3 bits (142), Expect = 2.910e-5 Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 1474 LMRRLLGTWPTGSSKREVAYLRLIAGVTCAAPSVAVMCPGSRVPLMLFRRMAQCINSPNTKVAQEAAYLVQADFIVMSYLAPNRALMDLVTNALCAN-RGHWNADVRNASDQAFEVMLD 1827
++R LL WP +S +EV +L + V A + R ++LFRR+A+C+NS + +VA+ A +L D I + +M +V AL N RGHWN V++ + +V D
Sbjct: 334 VIRGLLKYWPVTNSSKEVMFLGELEEVLEATQAAEFQ----RCMVLLFRRIARCLNSSHFQVAERALFLWNNDHIRTLITQNYKVIMPIVFPALERNTRGHWNQAVQSLTINVRKVFSD 448 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig204.5287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig204.5287.1 >prot_H-paniculata_contig204.5287.1 ID=prot_H-paniculata_contig204.5287.1|Name=mRNA_H-paniculata_contig204.5287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=550bp MSAEATAGNMHGLNSLSGDGGGVEEAAMMRGGGFPGGGQASCGDGKGGGEback to top mRNA from alignment at H-paniculata_contig204:41960..45813- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig204.5287.1 ID=mRNA_H-paniculata_contig204.5287.1|Name=mRNA_H-paniculata_contig204.5287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3854bp|location=Sequence derived from alignment at H-paniculata_contig204:41960..45813- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig204:41960..45813- >mRNA_H-paniculata_contig204.5287.1 ID=mRNA_H-paniculata_contig204.5287.1|Name=mRNA_H-paniculata_contig204.5287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3300bp|location=Sequence derived from alignment at H-paniculata_contig204:41960..45813- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |