mRNA_H-paniculata_contig2039.5281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2039.5281.1
Unique NamemRNA_H-paniculata_contig2039.5281.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A5A7Q915_STRAF (Mitogen-activated protein kinase kinase kinase (Fragment) n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q915_STRAF)

HSP 1 Score: 67.0 bits (162), Expect = 2.050e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3 
Query:    6 IAAGLAHMHRKGVAHCDVKPENVLLFS--GDFTAKLSDFGISLAIGEDRIGGGTLGFFAPETEVLG 197
            I  GL H+H  G  HCD+KPENVLL +  G+FTAK+SDFG+S   G      GT  + +PE E+LG
Sbjct:  131 ILRGLRHIHGLGFVHCDLKPENVLLVAENGNFTAKISDFGLSKERGTVPYASGTRAYLSPEAELLG 196
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A1S4CXB3_TOBAC (serine/threonine-protein kinase greatwall-like n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CXB3_TOBAC)

HSP 1 Score: 66.6 bits (161), Expect = 2.330e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:    3 DIAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGG----GTLGFFAPETEV 191
            +I  GL H+H +GV HCD+KP+N+LL   D TAK++DFG+S+ + + R G     GT  + APE+ V
Sbjct:  122 NIVLGLIHIHNRGVIHCDIKPDNILLAGTDETAKIADFGLSMTLEQSRTGNQGLRGTERYLAPESVV 188
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A1U7VWC6_NICSY (LOW QUALITY PROTEIN: serine/threonine-protein kinase greatwall-like n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7VWC6_NICSY)

HSP 1 Score: 66.2 bits (160), Expect = 2.360e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:    3 DIAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGG----GTLGFFAPETEV 191
            ++  GL H+H +GV HCD+KP+N+LL   D TAK++DFG+S+ + + R G     GT  + APE+ V
Sbjct:  121 NVVLGLVHIHSRGVIHCDIKPDNILLAGSDETAKITDFGLSMTLEQSRTGKQGLRGTERYMAPESVV 187
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A1S4AEH6_TOBAC (serine/threonine-protein kinase greatwall-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4AEH6_TOBAC)

HSP 1 Score: 66.6 bits (161), Expect = 2.510e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:    3 DIAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGG----GTLGFFAPETEV 191
            +I  GL H+H +GV HCD+KP+N+LL   D TAK++DFG+S+ + + R G     GT  + APE+ V
Sbjct:  148 NIVLGLIHIHNRGVIHCDIKPDNILLAGTDETAKIADFGLSMTLEQSRTGNQGLRGTERYLAPESVV 214
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A1J6IC90_NICAT (Mitogen-activated protein kinase kinase kinase npk1 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IC90_NICAT)

HSP 1 Score: 63.2 bits (152), Expect = 3.160e-10
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 3 
Query:    3 DIAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGG----GTLGFFAPETEV 191
            ++  GL H+H +GV HCD+KP+N+LL   D TAK++DFG+S+ + + R       GT  + APE+ V
Sbjct:  122 NVVLGLVHIHSRGVIHCDIKPDNILLAGSDETAKIADFGLSMTLEQSRAQKHGLRGTERYLAPESVV 188
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: UPI000904699C (phosphoenolpyruvate carboxylase kinase 2-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904699C)

HSP 1 Score: 63.2 bits (152), Expect = 3.800e-10
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 3 
Query:    3 DIAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGG----GTLGFFAPETEV 191
            ++  GL H+H +GV HCD+KP+N+LL   D TAK++DFG+S+ + + R       GT  + APE+ V
Sbjct:  122 NVVLGLVHIHSRGVIHCDIKPDNILLAGSDETAKIADFGLSMTLEQSRAQKHGLRGTERYLAPESVV 188
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A1S4D3J4_TOBAC (serine/threonine-protein kinase ppk11-like n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S4D3J4_TOBAC)

HSP 1 Score: 63.2 bits (152), Expect = 3.900e-10
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 3 
Query:    3 DIAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGG----GTLGFFAPET 185
            +I  GL H+H +GV HCD+KP+N+LL   D TAK++DFG+S+ + + R       GT  + APE+
Sbjct:  124 NIVLGLVHIHSRGVIHCDIKPDNILLAGSDETAKIADFGLSMTLEQGRAENQGLKGTERYMAPES 188
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A1J6IPQ2_NICAT (Mitogen-activated protein kinase kinase kinase 3 n=7 Tax=Nicotiana TaxID=4085 RepID=A0A1J6IPQ2_NICAT)

HSP 1 Score: 63.2 bits (152), Expect = 4.350e-10
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 3 
Query:    3 DIAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGG----GTLGFFAPETEV 191
            ++  GL H+H +GV HCD+KP+N+LL   D TAK++DFG+S+ + + R       GT  + APE+ V
Sbjct:  122 NVVLGLVHIHSRGVIHCDIKPDNILLAGSDETAKIADFGLSMTLEQSRAQKHGLRGTERYLAPESVV 188
[Close]
BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A1J6IC74_NICAT (Mitogen-activated protein kinase kinase kinase 3 n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IC74_NICAT)

HSP 1 Score: 62.4 bits (150), Expect = 7.370e-10
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 3 
Query:    3 DIAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGG----GTLGFFAPET 185
            +I  GL H+H +GV HCD+KP+N+LL   D TAK++DFG+S+ + + R       GT  + APE+
Sbjct:  122 NIVLGLIHIHSRGVIHCDIKPDNILLAGTDETAKIADFGLSMTLEQSRAENQGLKGTERYMAPES 186
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BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Match: A0A517NF01_9BACT (Non-specific serine/threonine protein kinase n=2 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517NF01_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 8.230e-10
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:    6 IAAGLAHMHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGE--DRIGGGTLGFFAPE 182
            +  G+AH H  GV HCD+KPENVLLF G+   +L+DFGI+ A+       G GT+G+ APE
Sbjct:  129 LLMGVAHAHSNGVIHCDIKPENVLLFDGN-VVRLADFGIAKAVQRTISSNGTGTVGYMAPE 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2039.5281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7Q915_STRAF2.050e-1151.52Mitogen-activated protein kinase kinase kinase (Fr... [more]
A0A1S4CXB3_TOBAC2.330e-1146.27serine/threonine-protein kinase greatwall-like n=4... [more]
A0A1U7VWC6_NICSY2.360e-1144.78LOW QUALITY PROTEIN: serine/threonine-protein kina... [more]
A0A1S4AEH6_TOBAC2.510e-1146.27serine/threonine-protein kinase greatwall-like n=1... [more]
A0A1J6IC90_NICAT3.160e-1043.28Mitogen-activated protein kinase kinase kinase npk... [more]
UPI000904699C3.800e-1043.28phosphoenolpyruvate carboxylase kinase 2-like n=1 ... [more]
A0A1S4D3J4_TOBAC3.900e-1044.62serine/threonine-protein kinase ppk11-like n=4 Tax... [more]
A0A1J6IPQ2_NICAT4.350e-1043.28Mitogen-activated protein kinase kinase kinase 3 n... [more]
A0A1J6IC74_NICAT7.370e-1044.62Mitogen-activated protein kinase kinase kinase 3 n... [more]
A0A517NF01_9BACT8.230e-1050.82Non-specific serine/threonine protein kinase n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2039contigH-paniculata_contig2039:18083..18727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue3e-07
Seed eggNOG ortholog4098.XP_009627572.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Belongs to the protein kinase superfamily
EggNOG OGs3862T@33090,3GU0K@35493,44QWE@71274,KOG0198@1,KOG0198@2759
COG Functional cat.T
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons2
Model size199
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2039.5281.1prot_H-paniculata_contig2039.5281.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2039 18109..18727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.9422126-UTR-H-paniculata_contig2039:18082..181081622929529.9422126-UTR-H-paniculata_contig2039:18082..18108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2039 18083..18108 +
1691480900.3873398-UTR-H-paniculata_contig2039:18082..181081691480900.3873398-UTR-H-paniculata_contig2039:18082..18108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2039 18083..18108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.9700372-CDS-H-paniculata_contig2039:18108..182111622929529.9700372-CDS-H-paniculata_contig2039:18108..18211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2039 18109..18211 +
1691480900.3967698-CDS-H-paniculata_contig2039:18108..182111691480900.3967698-CDS-H-paniculata_contig2039:18108..18211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2039 18109..18211 +
1622929529.9881918-CDS-H-paniculata_contig2039:18659..187271622929529.9881918-CDS-H-paniculata_contig2039:18659..18727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2039 18660..18727 +
1691480900.4099329-CDS-H-paniculata_contig2039:18659..187271691480900.4099329-CDS-H-paniculata_contig2039:18659..18727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2039 18660..18727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2039.5281.1

>prot_H-paniculata_contig2039.5281.1 ID=prot_H-paniculata_contig2039.5281.1|Name=mRNA_H-paniculata_contig2039.5281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MHRKGVAHCDVKPENVLLFSGDFTAKLSDFGISLAIGEDRIGGGTLGFFA
PETEVLG
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mRNA from alignment at H-paniculata_contig2039:18083..18727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2039.5281.1 ID=mRNA_H-paniculata_contig2039.5281.1|Name=mRNA_H-paniculata_contig2039.5281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at H-paniculata_contig2039:18083..18727+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATATCGCAGCTGGTCTCGCTCACATGCACCGCAAAGGGGTTGCTCAC
TGTGACGTTAAGCCCGAAAACGTGCTGCTGTTCAGTGGGGACTTTACGGC
GAAGCTATCGGACTTCGGCATATCACTGGGTGGGTGTGATATGTTGTCCG
AGTGTCTCGAATGTGGAGAGAAAGTACCGTCACGTTTCATGGACTTAGTT
TGTCGAGCCGGCTGATATCTTGCCATTTGACCCGAAGATTGCGGAAGCTC
TTTGAAATTGGTTGTAAGTACGTTACCAGAAATCCTATGCAAAATGGTTC
AAAATTATTTTGCTTTTATCGAGGACAACAGTCGACAAAATCGAGTATTC
TGATTGAAGTACATATACGTCTAGTAGTTTTTTGGCACTAAAAATAATCT
GCGCATGCACCTCGTCCTCCAATATGTTGCAAACACAAGATGGAGCAGTA
AAGGAGGCAGCCAAAAACATGACGAAATATAATATATTGTGAAGAACGCC
AAGAAAACCTCAACATCGCCTGCTTTTTTCATGTGGTGTTCCCGGATTCC
GTCTTTGGTCGAACCCGGATAATGCAGCGATAGGGGAGGATAGAATTGGT
GGTGGTACCCTGGGCTTCTTTGCCCCAGAAACAGAAGTGCTCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2039:18083..18727+

>mRNA_H-paniculata_contig2039.5281.1 ID=mRNA_H-paniculata_contig2039.5281.1|Name=mRNA_H-paniculata_contig2039.5281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig2039:18083..18727+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCGCAAAGGGGTTGCTCACTGTGACGTTAAGCCCGAAAACGTGCT
GCTGTTCAGTGGGGACTTTACGGCGAAGCTATCGGACTTCGGCATATCAC
TGGATGCACCGCAAAGGGGTTGCTCACTGTGACGTTAAGCCCGAAAACGT
GCTGCTGTTCAGTGGGGACTTTACGGCGAAGCTATCGGACTTCGGCATAT
CACTGGCGATAGGGGAGGATAGAATTGGTGGTGGTACCCTGGGCTTCTTT
GCCCCAGAAACAGAAGTGCTCGGTCGATAGGGGAGGATAGAATTGGTGGT
GGTACCCTGGGCTTCTTTGCCCCAGAAACAGAAGTGCTCGGT
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