mRNA_H-paniculata_contig20384.5277.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20384.5277.1
Unique NamemRNA_H-paniculata_contig20384.5277.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20384.5277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20384contigH-paniculata_contig20384:1901..3056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1095
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20384.5277.1prot_H-paniculata_contig20384.5277.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20384 2201..2843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.4233038-UTR-H-paniculata_contig20384:1900..22001622929529.4233038-UTR-H-paniculata_contig20384:1900..2200Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20384 1901..2200 -
1691480900.2370775-UTR-H-paniculata_contig20384:1900..22001691480900.2370775-UTR-H-paniculata_contig20384:1900..2200Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20384 1901..2200 -
1622929529.5156941-UTR-H-paniculata_contig20384:2843..30561622929529.5156941-UTR-H-paniculata_contig20384:2843..3056Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20384 2844..3056 -
1691480900.2758238-UTR-H-paniculata_contig20384:2843..30561691480900.2758238-UTR-H-paniculata_contig20384:2843..3056Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20384 2844..3056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.4417064-CDS-H-paniculata_contig20384:2200..22321622929529.4417064-CDS-H-paniculata_contig20384:2200..2232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20384 2201..2232 -
1691480900.2459166-CDS-H-paniculata_contig20384:2200..22321691480900.2459166-CDS-H-paniculata_contig20384:2200..2232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20384 2201..2232 -
1622929529.474572-CDS-H-paniculata_contig20384:2278..25801622929529.474572-CDS-H-paniculata_contig20384:2278..2580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20384 2279..2580 -
1691480900.2537417-CDS-H-paniculata_contig20384:2278..25801691480900.2537417-CDS-H-paniculata_contig20384:2278..2580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20384 2279..2580 -
1622929529.494354-CDS-H-paniculata_contig20384:2595..28431622929529.494354-CDS-H-paniculata_contig20384:2595..2843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20384 2596..2843 -
1691480900.267931-CDS-H-paniculata_contig20384:2595..28431691480900.267931-CDS-H-paniculata_contig20384:2595..2843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20384 2596..2843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20384.5277.1

>prot_H-paniculata_contig20384.5277.1 ID=prot_H-paniculata_contig20384.5277.1|Name=mRNA_H-paniculata_contig20384.5277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MSSQRRKCSHERCSTWSSHGLASTRKAEFCAQHAKDDMVDVRKRTCSHEG
CSTRSSYGLASTRKAEFCVRHAKDGMVQVRHKICSTRPSYGLAGTRKVEF
CAEHAKDGMVCVMGKMCSHEGCPTRPSYGLVSTRKVEFCAGHAKDGMVDV
RNKMCSHEGCSTRPSYGLVSMRKAECCAEHAKEVRRHGQVLHR*
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mRNA from alignment at H-paniculata_contig20384:1901..3056-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20384.5277.1 ID=mRNA_H-paniculata_contig20384.5277.1|Name=mRNA_H-paniculata_contig20384.5277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1156bp|location=Sequence derived from alignment at H-paniculata_contig20384:1901..3056- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAATACTTCTAGAGAGGCCATCATCGTAGAAAGATATACCACCGAAA
ACGACGTCGTTCTGGTGCGCGAACCATAGAGTGTTTTTAGCTCGAGATAT
CTAGCACTAAAGGATACGGTGTGGAGGCACCACGGGCAGCAATTGTTCCA
TCCCTTTAGCTTCGGCGACTCGGCAACGCCGACAAAGCGGTGTGCCGTAT
TTAGTCAAACAATATGTCAAGCCAAAGGAGGAAATGTTCTCATGAGCGCT
GCTCCACATGGTCGTCGCACGGATTGGCAAGCACGAGAAAGGCAGAGTTC
TGTGCACAGCATGCCAAAGATGATATGGTAGACGTGCGAAAAAGAACGTG
CTCCCACGAGGGCTGTTCCACACGGTCGTCGTACGGATTGGCGAGCACGA
GAAAGGCAGAGTTCTGTGTGCGGCATGCCAAAGACGGCATGGTACAAGTA
CGGCACAAAATGTGTTCCCACAACAGCTGTTCCACACGGCCGTCATATGG
GTTGGCAGGCACGAGAAAGGTGGAGTTTTGTGCGGAGCATGCCAAAGACG
GCATGGTATGCGTGATGGGCAAAATGTGCTCCCACGAGGGCTGCCCCACG
CGCCCGTCGTATGGGCTGGTGAGCACGAGAAAGGTAGAGTTCTGTGCGGG
GCATGCCAAAGATGGCATGGTAGATGTGCGGAATAAAATGTGCTCTCACG
AGGGTTGCTCCACACGACCGTCGTATGGATTGGTGAGCATGAGGAAGGCA
GAGTGCTGTGCCGAACATGCCAAAGAAGGAATGGTCGATGACAGGACCCG
GAAGAGCTTCACCCGCGGCCGTCGTTCGCAGGCACGGCCAAGTCCTCCAC
AGATAAAACTAGAGATACCTTGGGGGGACGCCGACCGTCATGGATATTCG
GTAACATCCGAAAAGGCCGGAAAGCGAAACTCACGTACTGTGCCTTTACA
CAGTGGTAGCGCTCTGTCACGTGAGATTCGCAGCGTGAAACGGGCTCGCA
GGGGCGCGGGATCAGAGCAGTTAGCTGTTGGCATGCTCGCTGCCGGCATG
TTGTCTCCCGACGACGGGACCAATGTGAAGACGGAGGTGACTGTGTCGTG
ATGTTCGGTGTCTGACCATGCCTCGCAGTGAGTGGCAGAGAAGCGAGGTC
ATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig20384:1901..3056-

>mRNA_H-paniculata_contig20384.5277.1 ID=mRNA_H-paniculata_contig20384.5277.1|Name=mRNA_H-paniculata_contig20384.5277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig20384:1901..3056- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAGCCAAAGGAGGAAATGTTCTCATGAGCGCTGCTCCACATGGTC
GTCGCACGGATTGGCAAGCACGAGAAAGGCAGAGTTCTGTGCACAGCATG
CCAAAGATGATATGGTAGACGTGCGAAAAAGAACGTGCTCCCACGAGGGC
TGTTCCACACGGTCGTCGTACGGATTGGCGAGCACGAGAAAGGCAGAGTT
CTGTGTGCGGCATGCCAAAGACGGCATGGTACAAGTACGGCACAAAATAT
GTCAAGCCAAAGGAGGAAATGTTCTCATGAGCGCTGCTCCACATGGTCGT
CGCACGGATTGGCAAGCACGAGAAAGGCAGAGTTCTGTGCACAGCATGCC
AAAGATGATATGGTAGACGTGCGAAAAAGAACGTGCTCCCACGAGGGCTG
TTCCACACGGTCGTCGTACGGATTGGCGAGCACGAGAAAGGCAGAGTTCT
GTGTGCGGCATGCCAAAGACGGCATGGTACAAGTACGGCACAAAATCTGT
TCCACACGGCCGTCATATGGGTTGGCAGGCACGAGAAAGGTGGAGTTTTG
TGCGGAGCATGCCAAAGACGGCATGGTATGCGTGATGGGCAAAATGTGCT
CCCACGAGGGCTGCCCCACGCGCCCGTCGTATGGGCTGGTGAGCACGAGA
AAGGTAGAGTTCTGTGCGGGGCATGCCAAAGATGGCATGGTAGATGTGCG
GAATAAAATGTGCTCTCACGAGGGTTGCTCCACACGACCGTCGTATGGAT
TGGTGAGCATGAGGAAGGCAGAGTGCTGTGCCGAACATGCCAAAGAAGCT
GTTCCACACGGCCGTCATATGGGTTGGCAGGCACGAGAAAGGTGGAGTTT
TGTGCGGAGCATGCCAAAGACGGCATGGTATGCGTGATGGGCAAAATGTG
CTCCCACGAGGGCTGCCCCACGCGCCCGTCGTATGGGCTGGTGAGCACGA
GAAAGGTAGAGTTCTGTGCGGGGCATGCCAAAGATGGCATGGTAGATGTG
CGGAATAAAATGTGCTCTCACGAGGGTTGCTCCACACGACCGTCGTATGG
ATTGGTGAGCATGAGGAAGGCAGAGTGCTGTGCCGAACATGCCAAAGAAG
TTCGCAGGCACGGCCAAGTCCTCCACAGATAATTCGCAGGCACGGCCAAG
TCCTCCACAGATAA
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