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Homology
BLAST of mRNA_H-paniculata_contig20361.5274.1 vs. uniprot
Match: A0A6H5JR08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR08_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 3.180e-8 Identity = 43/87 (49.43%), Postives = 48/87 (55.17%), Query Frame = 1
Query: 151 LDSPRNRGRAYDDRWKAPGHAESVLAKFVERLEEHRVA------------------------NHSPLDEEAAAALAEARANRGVAMA 339
LDSPR+RGR YDDRWK PG AESVLA FVERLE +A S + A+AALAEARANR A+A
Sbjct: 974 LDSPRHRGRQYDDRWKMPGKAESVLASFVERLEHRGLAVDGGESGGXXXXXXXXXXXXXRDSTESYGETSASAALAEARANRHAAVA 1060
BLAST of mRNA_H-paniculata_contig20361.5274.1 vs. uniprot
Match: D8LCX9_ECTSI (Villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX9_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 6.550e-7 Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1
Query: 151 LDSPRNRGRAYDDRWKAPGHAESVLAKFVERLEEHR 258
LDSPR+RGR YDDRWK PG AESVLA FVERLE HR
Sbjct: 1785 LDSPRHRGRQYDDRWKMPGKAESVLASFVERLE-HR 1819
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 61.2 |
| Seed ortholog evalue | 7.8e-07 |
| Seed eggNOG ortholog | 2880.D8LCX9 |
| Preferred name | FLII |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0001703,GO:0003674,GO:0003779,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005903,GO:0005912,GO:0005924,GO:0005925,GO:0006996,GO:0007010,GO:0007275,GO:0007369,GO:0007525,GO:0007527,GO:0008092,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0010004,GO:0010927,GO:0015630,GO:0016043,GO:0022607,GO:0030029,GO:0030036,GO:0030054,GO:0030055,GO:0030154,GO:0030239,GO:0031032,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032989,GO:0042692,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048468,GO:0048598,GO:0048646,GO:0048856,GO:0048869,GO:0051014,GO:0051146,GO:0055001,GO:0055002,GO:0061061,GO:0070013,GO:0070161,GO:0070925,GO:0071840,GO:0097435,GO:0098862 |
| EggNOG free text desc. | actin filament severing |
| EggNOG OGs | COG4886@1,KOG0443@1,KOG0443@2759,KOG0444@2759 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 752 |
| Cds size | 750 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20361.5274.1 >prot_H-paniculata_contig20361.5274.1 ID=prot_H-paniculata_contig20361.5274.1|Name=mRNA_H-paniculata_contig20361.5274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MGSPRAGGNGSRAAGGGGGGSHDAEISAASIAVSRYSLESAMSGGDGGED
LDSPRNRGRAYDDRWKAPGHAESVLAKFVERLEEHRVANHSPLDEEAAAA
LAEARANRGVAMAGIKSSPTARLHAPAAGSSGSATKAGKAGAIRPGQGDP
KDDEGEAQPLRYHKQAPALSKAASKKKKRTSTSGPVSGGGREPRKRSLGT
GKRPPGSTRMGGVAAPREIVGSRKTHRKRAVGDNGGGDAVGGGGGSGVGG back to topmRNA from alignment at H-paniculata_contig20361:2769..4212- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig20361.5274.1 ID=mRNA_H-paniculata_contig20361.5274.1|Name=mRNA_H-paniculata_contig20361.5274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1444bp|location=Sequence derived from alignment at H-paniculata_contig20361:2769..4212- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCAGTCCTAGAGCTGGCGGCAATGGTTCGCGAGCGGCGGGGGGCGG
GGGCGGGGGAAGCCACGACGCCGAGATATCGGCTGCGTCTATCGCGGTCA
GCCGGTACAGCTTGGAGTCGGCGATGAGCGGGGGAGACGGCGGGGAAGAT
CTTGATTCGCCGCGAAACCGTGGAAGGGCTTATGATGATCGGTGGAAGGT
AAATTTCGTTGGTTGAACATTTGATCGTCGGTTTCCATCTGATCCCTACC
TGCCTGAAGAACAGGGGAAAATTACGCTTCGTGAAAGATGGTCATTTTCC
ATTTTAACCGTTTCATGTCCACGGTTGATTTGCTTCACAGCAGCAATGCC
ATGTGCTTGACGTGGAGGTAGTACAGCTGACAGACTACATTGCATGCGTT
GCCTTCATCGAACGGTGGCAGCCAGCTGGACAACCGCAAACAGACATGAT
AAGTCGCTGTTGTTCGGATAGACAGCCCAGTGCAAGCAGTACATGCAGTA
CGGACAGGTTGATGTTGGCATCGTTTTGCCAGCAACGATTGCAGCCATCT
TTGGACGTTTTGTCGTGACGTGTGTTTTTTGTTCCGAAACAGTTTTTGCT
ACATTCCAATGTACAGCATCTACACGGACAGTAAGGATCTCATGTGCGAA
AATTGAAAACTGATCAATTTTTCATTTCCAGGACTATCATTTGAGTCCTC
TCCTTGCCTCGCTTCTCTTCCTGTTCTCGTGTCCTTGTAATTTTCTTCAT
TTTGTTCTTCTCTGGGGGAAAAATAATCCGTACTTTCTGATGATTGATAC
TAATACAAGGAGTAATCCCTATTTTCTCATAAACGTGCGACGCCTACATG
TACTTTGTTTTTTCTCTCAACCCACGACACACGGAATCACAGGCTCCGGG
TCACGCCGAGTCAGTCCTAGCGAAGTTCGTGGAACGGCTCGAAGAACACC
GCGTTGCGAATCACTCTCCACTAGACGAGGAAGCAGCGGCCGCGCTAGCT
GAAGCCCGCGCGAACCGGGGTGTGGCCATGGCCGGGATCAAAAGCTCGCC
TACCGCACGCCTGCACGCGCCCGCGGCGGGATCGAGCGGTTCTGCCACGA
AGGCGGGCAAGGCGGGGGCGATTCGGCCGGGACAGGGGGATCCAAAAGAT
GACGAGGGAGAAGCACAGCCACTCCGTTATCATAAACAGGCTCCCGCGCT
GTCGAAGGCCGCTTCCAAGAAGAAAAAACGAACGAGCACCAGCGGCCCGG
TGAGCGGGGGAGGAAGGGAACCTCGAAAGCGGTCATTGGGAACAGGCAAG
CGGCCCCCGGGTAGCACCAGGATGGGCGGTGTCGCTGCCCCGAGGGAGAT
AGTTGGTAGTAGGAAGACCCATAGAAAGAGGGCGGTGGGGGACAATGGGG
GTGGCGATGCTGTCGGTGGCGGTGGTGGTAGCGGTGTTGGCGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig20361:2769..4212- >mRNA_H-paniculata_contig20361.5274.1 ID=mRNA_H-paniculata_contig20361.5274.1|Name=mRNA_H-paniculata_contig20361.5274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig20361:2769..4212- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCAGTCCTAGAGCTGGCGGCAATGGTTCGCGAGCGGCGGGGGGCGG
GGGCGGGGGAAGCCACGACGCCGAGATATCGGCTGCGTCTATCGCGGTCA
GCCGGTACAGCTTGGAGTCGGCGATGAGCGGGGGAGACGGCGGGGAAGAT
CTTGATTCGCCGCGAAACCGTGGAAGGGCTTATGATGATCGGTGGAAGAT
GGGCAGTCCTAGAGCTGGCGGCAATGGTTCGCGAGCGGCGGGGGGCGGGG
GCGGGGGAAGCCACGACGCCGAGATATCGGCTGCGTCTATCGCGGTCAGC
CGGTACAGCTTGGAGTCGGCGATGAGCGGGGGAGACGGCGGGGAAGATCT
TGATTCGCCGCGAAACCGTGGAAGGGCTTATGATGATCGGTGGAAGGCTC
CGGGTCACGCCGAGTCAGTCCTAGCGAAGTTCGTGGAACGGCTCGAAGAA
CACCGCGTTGCGAATCACTCTCCACTAGACGAGGAAGCAGCGGCCGCGCT
AGCTGAAGCCCGCGCGAACCGGGGTGTGGCCATGGCCGGGATCAAAAGCT
CGCCTACCGCACGCCTGCACGCGCCCGCGGCGGGATCGAGCGGTTCTGCC
ACGAAGGCGGGCAAGGCGGGGGCGATTCGGCCGGGACAGGGGGATCCAAA
AGATGACGAGGGAGAAGCACAGCCACTCCGTTATCATAAACAGGCTCCCG
CGCTGTCGAAGGCCGCTTCCAAGAAGAAAAAACGAACGAGCACCAGCGGC
CCGGTGAGCGGGGGAGGAAGGGAACCTCGAAAGCGGTCATTGGGAACAGG
CAAGCGGCCCCCGGGTAGCACCAGGATGGGCGGTGTCGCTGCCCCGAGGG
AGATAGTTGGTAGTAGGAAGACCCATAGAAAGAGGGCGGTGGGGGACAAT
GGGGGTGGCGATGCTGTCGGTGGCGGTGGTGGTAGCGGTGTTGGCGGCGC
TCCGGGTCACGCCGAGTCAGTCCTAGCGAAGTTCGTGGAACGGCTCGAAG
AACACCGCGTTGCGAATCACTCTCCACTAGACGAGGAAGCAGCGGCCGCG
CTAGCTGAAGCCCGCGCGAACCGGGGTGTGGCCATGGCCGGGATCAAAAG
CTCGCCTACCGCACGCCTGCACGCGCCCGCGGCGGGATCGAGCGGTTCTG
CCACGAAGGCGGGCAAGGCGGGGGCGATTCGGCCGGGACAGGGGGATCCA
AAAGATGACGAGGGAGAAGCACAGCCACTCCGTTATCATAAACAGGCTCC
CGCGCTGTCGAAGGCCGCTTCCAAGAAGAAAAAACGAACGAGCACCAGCG
GCCCGGTGAGCGGGGGAGGAAGGGAACCTCGAAAGCGGTCATTGGGAACA
GGCAAGCGGCCCCCGGGTAGCACCAGGATGGGCGGTGTCGCTGCCCCGAG
GGAGATAGTTGGTAGTAGGAAGACCCATAGAAAGAGGGCGGTGGGGGACA
ATGGGGGTGGCGATGCTGTCGGTGGCGGTGGTGGTAGCGGTGTTGGCGGC back to top
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