mRNA_H-paniculata_contig20360.5273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20360.5273.1
Unique NamemRNA_H-paniculata_contig20360.5273.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: D7FLP0_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 8.790e-35
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:    1 RTLGGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAALG 222
            R  GGGK+AVPGKNVKI YEGCFPDGR+FD   N+R+PL+FRVGM+NVI GMDRGVEGMR+GGSREI+IPAALG
Sbjct:  269 RMFGGGKIAVPGKNVKICYEGCFPDGRVFDKNDNRRRPLRFRVGMKNVIAGMDRGVEGMRVGGSREISIPAALG 342
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: A0A6H5JKN3_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN3_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 6.580e-34
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:   10 GGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAALG 222
            GGGK+AVPGKNVKI YEGCFPDGR+FD   N+R+PLQFRVGM+NVI GMDRGVEGMR+GGSREI+IPAALG
Sbjct:  387 GGGKIAVPGKNVKICYEGCFPDGRVFDKNNNRRRPLQFRVGMKNVIAGMDRGVEGMRVGGSREISIPAALG 457
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: A0A835YI76_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI76_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.400e-24
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 RTLGGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAAL 219
            + LG GK+A  GK VK+LYEG FPDGR+FD   N+R PL FRVG+  VI GM+RGVEGMR+GG RE+ IPAAL
Sbjct:  359 KVLGAGKVASSGKQVKVLYEGSFPDGRVFDKNFNRRAPLGFRVGLGRVIKGMERGVEGMRVGGQREVYIPAAL 431
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: A0A482SH20_9ARCH (Peptidyl-prolyl cis-trans isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SH20_9ARCH)

HSP 1 Score: 88.2 bits (217), Expect = 3.420e-19
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    7 LGGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAALG 222
            +G G+   PG +VK+LYEG FPDG +FD+ Q K++P  FR G   VI GMD G+EGMRIGG+RE+ IP A+G
Sbjct:  247 MGKGQEPKPGASVKVLYEGYFPDGTLFDAKQKKKQPFVFRKGTGQVIKGMDVGLEGMRIGGAREVFIPYAMG 318
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: A0A7S2D527_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D527_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.270e-18
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    7 LGGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAALG 222
            +G G  A  G+ VK+LYEG   DG +FD     R P  FR+G++ V+ GMD+GVEGM++GG REI IP A+G
Sbjct:   66 IGTGPPAPLGRTVKLLYEGTLKDGTVFDKKDKARSPFTFRLGLREVVAGMDKGVEGMKVGGHREIKIPPAMG 137
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: A0A7S2HCT7_9STRA (Peptidylprolyl isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HCT7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.810e-18
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    7 LGGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAALG 222
            +G G     G  V ILYEG   DG  FD  QN+R PL FRVG++ V+ GMD G+EGMR+GG REI IPAA+G
Sbjct:  314 IGAGYAVKSGAQVNILYEGTLTDGSTFDKRQNRRSPLSFRVGLREVVPGMDIGLEGMRVGGIREIHIPAAMG 385
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: A0A7S2JPD6_9STRA (Peptidylprolyl isomerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JPD6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.880e-18
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    7 LGGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAALG 222
            +GGG +   G+ V ILYEG   DG +FD  +N++ PL FR G   VI G++RG++GMR GG REI IP ALG
Sbjct:   89 IGGGPLIKSGRRVSILYEGKLTDGTVFDRKKNRKSPLMFRQGTGQVIRGLERGLDGMRTGGEREIIIPPALG 160
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: A0A7S1UBD1_9STRA (Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBD1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.430e-17
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 RTLGGGKMAVPGKNVKILYEGCFP--DGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAALG 222
            R +G GK    GK V++ YEG     DGR+FDS  N+ +P +FR+G + VI G+DRGVEGM++GG R I +PAALG
Sbjct:  223 RIIGNGKPVRKGKQVRLTYEGFLKKEDGRMFDSNMNRGRPFKFRMGTREVIEGLDRGVEGMKVGGVRRITVPAALG 298
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: A0A7S2E8I9_9STRA (Peptidylprolyl isomerase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E8I9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.050e-16
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    7 LGGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAALG 222
            +G G     G+ V ILYEG F +G +FD  QNK  PL FR G   VI G+++G+EGM++GG R I IP ALG
Sbjct:   76 IGDGLPVKSGRKVSILYEGAFTNGDVFDRNQNKGNPLTFRPGTGAVIRGLEKGIEGMKVGGERIITIPPALG 147
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BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Match: K2F3E1_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2F3E1_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 3.830e-15
Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    7 LGGGKMAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVEGMRIGGSREIAIPAAL 219
            +G G++AV GK V + Y G   DG  FDS+ ++ +P  F +G+  VIVG D+GVEGM++GG R++ IP+++
Sbjct:   84 IGTGEVAVTGKKVTVNYSGTLTDGTKFDSSYDRNEPFSFTLGVGEVIVGWDKGVEGMKVGGKRKLTIPSSM 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20360.5273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLP0_ECTSI8.790e-3579.73Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JKN3_9PHAE6.580e-3483.10Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835YI76_9STRA3.400e-2465.75Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A482SH20_9ARCH3.420e-1956.94Peptidyl-prolyl cis-trans isomerase n=1 Tax=archae... [more]
A0A7S2D527_9STRA1.270e-1851.39Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
A0A7S2HCT7_9STRA2.810e-1856.94Peptidylprolyl isomerase n=1 Tax=Dictyocha speculu... [more]
A0A7S2JPD6_9STRA8.880e-1852.78Peptidylprolyl isomerase n=1 Tax=Leptocylindrus da... [more]
A0A7S1UBD1_9STRA1.430e-1752.63Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva ... [more]
A0A7S2E8I9_9STRA6.050e-1651.39Peptidylprolyl isomerase n=2 Tax=Ditylum brightwel... [more]
K2F3E1_9BACT3.830e-1545.07Peptidyl-prolyl cis-trans isomerase n=1 Tax=uncult... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20360contigH-paniculata_contig20360:307..1514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue2.9e-25
Seed eggNOG ortholog2880.D7FLP0
Preferred nameFKBP15
KEGG koko:K01802,ko:K07466,ko:K14826,ko:K17478
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000412,GO:0000413,GO:0000414,GO:0000415,GO:0000785,GO:0000792,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006457,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009719,GO:0009725,GO:0009755,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010506,GO:0010507,GO:0010563,GO:0010564,GO:0010605,GO:0010639,GO:0010921,GO:0010923,GO:0010948,GO:0016020,GO:0016043,GO:0016241,GO:0016242,GO:0016569,GO:0016570,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019220,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0023052,GO:0030522,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031399,GO:0031400,GO:0031497,GO:0031974,GO:0031976,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032870,GO:0033043,GO:0033044,GO:0033313,GO:0034357,GO:0034622,GO:0034728,GO:0035303,GO:0035305,GO:0035626,GO:0036211,GO:0040020,GO:0042221,GO:0042393,GO:0042651,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045835,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0055035,GO:0060255,GO:0061077,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070594,GO:0070887,GO:0071103,GO:0071310,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1903046,GO:1905268,GO:1990837,GO:2000241,GO:2000242,GO:2001251
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03009,ko03032,ko03110,ko03400,ko04812
Exons2
Model size225
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20360.5273.1prot_H-paniculata_contig20360.5273.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20360 307..1493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.0064025-CDS-H-paniculata_contig20360:306..4011622929529.0064025-CDS-H-paniculata_contig20360:306..401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20360 307..401 -
1691480900.068897-CDS-H-paniculata_contig20360:306..4011691480900.068897-CDS-H-paniculata_contig20360:306..401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20360 307..401 -
1622929529.0280964-CDS-H-paniculata_contig20360:1384..14931622929529.0280964-CDS-H-paniculata_contig20360:1384..1493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20360 1385..1493 -
1691480900.0854452-CDS-H-paniculata_contig20360:1384..14931691480900.0854452-CDS-H-paniculata_contig20360:1384..1493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20360 1385..1493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.0447285-UTR-H-paniculata_contig20360:1493..15141622929529.0447285-UTR-H-paniculata_contig20360:1493..1514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20360 1494..1514 -
1691480900.0956948-UTR-H-paniculata_contig20360:1493..15141691480900.0956948-UTR-H-paniculata_contig20360:1493..1514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20360 1494..1514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20360.5273.1

>prot_H-paniculata_contig20360.5273.1 ID=prot_H-paniculata_contig20360.5273.1|Name=mRNA_H-paniculata_contig20360.5273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MAVPGKNVKILYEGCFPDGRIFDSAQNKRKPLQFRVGMQNVIVGMDRGVE
GMRIGGSREIAIPAALG*
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mRNA from alignment at H-paniculata_contig20360:307..1514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20360.5273.1 ID=mRNA_H-paniculata_contig20360.5273.1|Name=mRNA_H-paniculata_contig20360.5273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1208bp|location=Sequence derived from alignment at H-paniculata_contig20360:307..1514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAACGCTGGGAGGCGGCAAGATGGCAGTACCAGGCAAAAACGTGAAGAT
CTTGTACGAAGGCTGCTTCCCCGATGGTCGAATTTTCGACTCGGCCCAAA
ACAAGCGCAAGCCGCTGCAGTTCCGCGTAGGTGAGTTCAAACCGTGTGTG
TGTCTGTGTCTGTGTCTGTGCCTGTGCCTGTGCCTGTGCCTGTTCCTGTA
TTTCTCATTCGATTCTTGCTTCGTTTTTTTTTTTTTTTCCAAAAGTCAAA
AATCTTGTTTCCGGCGCCCATAAGAAATGGCCTCGCTTTTTTATTGCCCC
TTCTGATGGACATTTTTTTTTTTTTTTCCGATTTATATCGTATGCTAACG
TTTCAAACACCCCGGACAGGGGTGAGAGATGAAATGAAAAGTGATTGATT
TTGAGCAGAGAACGTTTTTACGCCGTTCTGGTTTAGCGCAGCGTCTATGA
ACGGAATTCGGAGGTCAAGCGGAATTGCGTATAATTAGTATCTCGCAATT
TATATCTTGATGCATTGTTTTAACTCCTGGCTTTGGGGAAGTCAGGACAC
TGCGTCGCAAGGGATGACGTGCCCAAACCCGAATGGAGGTTCAAGGCGGC
GTGTCAGCAGAAAGTGCACCCCCGGTTCTCGCGTCAAGTTGGCTCTTGGT
TCTCGACTGCGGCAGCTTTCCGACAACCTGATGTAATCTCATTTTTCATC
TAGGGGATCGATTCTATCACGTGTTGTGCAGGAATACTTACTGCACCGTA
CCTTGAAATTGTCTTGAAATTGTTTAGCTGATTCGGTTTGGTTCAAGCTT
CGTAACTCCCTCCCCCTGCCCCCCCCCCCCATTTCGTTTCTTTTTGGAAG
AAGTCACTCAACAGTGCGACCCCTCCCTCCAAAATGAAAAAAAAAAAAAA
ATGGTTGGCTTGTGGAACCGGACACTCGGTAGTAGTATTAAAAGGTGACT
TGAACAAACACACCTTCAAAGTTGAATTGATGCCTATTGTCGTGATTTTT
CTCTTTTTGTATGATGTACATGTTTTTCAAAGCGCATATCCATGTTGTCC
GTGCTATCCCTGTTGGTGACCCTCCCCATCCTGCCGGTTGTATTAATCTC
TTAAATCTTTCAGGCATGCAGAACGTGATCGTCGGCATGGACAGAGGCGT
GGAGGGAATGCGTATTGGCGGCAGTCGAGAAATCGCTATTCCCGCAGCAT
TGGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20360:307..1514-

>mRNA_H-paniculata_contig20360.5273.1 ID=mRNA_H-paniculata_contig20360.5273.1|Name=mRNA_H-paniculata_contig20360.5273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig20360:307..1514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGTACCAGGCAAAAACGTGAAGATCTTGTACGAAGGCTGCTTCCC
CGATGGTCGAATTTTCGACTCGGCCCAAAACAAGCGCAAGCCGCTGCAGT
TCCGCGTAGATGGCAGTACCAGGCAAAAACGTGAAGATCTTGTACGAAGG
CTGCTTCCCCGATGGTCGAATTTTCGACTCGGCCCAAAACAAGCGCAAGC
CGCTGCAGTTCCGCGTAGGCATGCAGAACGTGATCGTCGGCATGGACAGA
GGCGTGGAGGGAATGCGTATTGGCGGCAGTCGAGAAATCGCTATTCCCGC
AGCATTGGGGTAAGCATGCAGAACGTGATCGTCGGCATGGACAGAGGCGT
GGAGGGAATGCGTATTGGCGGCAGTCGAGAAATCGCTATTCCCGCAGCAT
TGGGGTAA
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