mRNA_H-paniculata_contig20357.5272.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20357.5272.1
Unique NamemRNA_H-paniculata_contig20357.5272.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: A0A6H5KR75_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KR75_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 6.740e-29
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 EPFSPAEEARAVVEGRFLSMQGRLLRMGIPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLC 246
            E F P  EARAVVE RFLSM+GR+ RMGIP P+AV ATGGG+NSP+ MQV+AD+F+APV L+TV DAAA+GAALRAKHG+LC
Sbjct:  450 EAFPPGVEARAVVESRFLSMRGRMQRMGIPRPTAVLATGGGTNSPSMMQVLADVFSAPVLLRTVPDAAAIGAALRAKHGYLC 531          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: A0A836CEA2_9STRA (Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.560e-25
Identity = 72/144 (50.00%), Postives = 86/144 (59.72%), Query Frame = 1
Query:    7 FSPAEEARAVVEGRFLSMQGRLLRMGIPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGYIPFSQLLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV 438
             S A  ARA+VEGRFLSM+ RL RMGI P   V A GG S S A MQV+AD+F +PVY+  V DAA VGAALRAKHG L  +        G  +PFS +LGS            GL + A+P   A+A YQ M + YL+LE  V
Sbjct:  392 LSAATFARALVEGRFLSMRARLTRMGIGPAQRVLAMGGASASAAMMQVLADVFASPVYVGAVPDAAVVGAALRAKHGVLSQRA-------GRLLPFSSILGSFD--------TRGLKVVATPDAKASATYQAMQKPYLELERAV 520          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: A0A7S4D9U3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9U3_HETAK)

HSP 1 Score: 102 bits (255), Expect = 4.070e-25
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    7 FSPAEEARAVVEGRFLSMQGRLLRMGIPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGY-IPFSQLLGS 312
            F PA + RAVVEGRFLSM+ R+  +G+P PS + ATGG S + A +QV+AD+F  PV+  ++ DAAAVGAA RAKHGWLC+   +         +PFS ++G+
Sbjct:    4 FPPAADVRAVVEGRFLSMRARMTTIGVPRPSLLVATGGASANKAILQVMADVFGVPVFSASISDAAAVGAAYRAKHGWLCSIHSQVTEVNDKLPVPFSDVIGT 106          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: D7G5U6_ECTSI (FGGY_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 6.160e-23
Identity = 65/144 (45.14%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    7 FSPAEEARAVVEGRFLSMQGRLLRMGIPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGYIPFSQLLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV 438
             S  EE RAVVEGRFLSM+     +G+  P  V ATGGGSN+   +QV+AD+F APV+     D+AAVGAALRAKHG       E    G  Y+PF+++ G S  G+ A          A P  DA   Y GM +R   LE  V
Sbjct:  462 LSAEEEVRAVVEGRFLSMKAHARELGVAKPERVLATGGGSNNAELLQVLADVFQAPVFTAAASDSAAVGAALRAKHG------VEGLRRGVPYVPFAEVYGESDMGEPA----------AVPSPDAGEAYGGMVDRMDALEQRV 589          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: A0A8J1Y9F9_OWEFU (Xylulose kinase n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y9F9_OWEFU)

HSP 1 Score: 90.9 bits (224), Expect = 1.640e-18
Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = 1
Query:    7 FSPAEEARAVVEGRFLSMQGRLLRMG--IPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGYIPFSQLLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV 438
            FS AEE RA+VEG+F++ +     +G  I P + V ATGG S++ A +QVI+D+FNAPVY++ V ++A +G A RAKHG++          GG  +PFS ++  + D             AA P +DA  VY  +  RY  LE  +
Sbjct:  401 FSNAEEVRALVEGQFIAKRVHAENLGFNIGPTTRVLATGGASSNQAMLQVISDVFNAPVYIQDVANSACLGGAYRAKHGYM----------GGETVPFSDVVKDAPD----------FTCAAKPSQDADKVYTPLVARYKALEERI 526          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: A0A7C5EKG9_9BACT (Carbohydrate kinase n=2 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7C5EKG9_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 7.810e-18
Identity = 54/146 (36.99%), Postives = 81/146 (55.48%), Query Frame = 1
Query:    1 EPFSPAEEARAVVEGRFLSMQGRLLRMGIPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGYIPFSQLLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV 438
            E F PA E RAVVEG+FL+M+    ++GI     + ATGG S++ + ++V+AD+F  PVY+    ++AA+GAA RA HGWLCA +       G ++PF+  +  + +            +A  P   A   Y  M ERY +LE  +
Sbjct:  405 EAFDPAAETRAVVEGQFLAMRLHARKIGISAEK-ILATGGASSNRSILKVMADVFGVPVYVAEQANSAALGAACRAFHGWLCAMK-------GSFVPFAAAMEGAPE----------FQMAFRPEPAAQRTYDAMLERYEELEKRI 532          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: A0A2T7PRN6_POMCA (Xylulose kinase n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PRN6_POMCA)

HSP 1 Score: 84.7 bits (208), Expect = 2.400e-16
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 1
Query:    7 FSPAEEARAVVEGRFLSMQGRLLRMG--IPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGYIPFSQLLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV 438
            F  A E RAV+E +F++ +     +G  I P + + ATGG S++PA +QV+AD+FNAPVY+K V ++AA+G A RAK+GWL           G  +P+ Q++   ++              A P   A  VY+ + + Y KLEAEV
Sbjct:  401 FLDAVEVRAVLESQFMAQRVHAENLGFNIGPDTNIIATGGASSNPAILQVLADVFNAPVYIKDVANSAALGCAFRAKYGWL-----------GTDVPYLQIVEKGSE----------RVCVAYPTPGADDVYRVLCQCYRKLEAEV 525          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: A0A7X7J8S5_9BACT (Carbohydrate kinase n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7J8S5_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 3.260e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query:    7 FSPAEEARAVVEGRFLSMQGRLLRMGIPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGYIPFSQLLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV 438
            F+  E+ARAV+EG+FLSM+     +G+ P   + ATGG S + + ++ +AD+F APVY     ++A++GAA RA HGW CA++K        Y+PF + L  +   +           AA P     A Y  M ERY KLE  +
Sbjct:  409 FNEGEDARAVIEGQFLSMRLHGRNIGLAPRK-ILATGGASVNRSILKTMADVFGAPVYTSCRPNSASLGAAYRALHGWDCARKKR-------YVPFMESLRGAPPFE----------RAAEPDPALRATYDPMLERYAKLERSI 534          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: A0A7V4LS16_9BACT (FGGY_C domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V4LS16_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 9.130e-16
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    7 FSPAEEARAVVEGRFLSMQGRLLRMGIPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGYIPFSQLLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV 438
            F P  EARAV+EG+FLSM+    R+GI P + +  TGG S + A ++++ D+F  PV      ++AA+GAA RA HGW+C Q++        ++PF++++  +              LAA P   A   Y  +   Y +LEA +
Sbjct:  101 FPPTVEARAVIEGQFLSMRLHGGRIGIRP-AKILVTGGASQNRAIVRILCDVFGVPVCTGEQPNSAAIGAAYRALHGWVCVQKRR-------FVPFARVVAKAPP----------FHLAAEPDTAAHRAYTRLLPVYARLEARI 226          
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Match: UPI00142597DE (xylulose kinase-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142597DE)

HSP 1 Score: 82.4 bits (202), Expect = 1.560e-15
Identity = 57/147 (38.78%), Postives = 84/147 (57.14%), Query Frame = 1
Query:    7 FSPAEEARAVVEGRFLSMQGRLLRMG--IPPPSAVFATGGGSNSPATMQVIADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKG-SGGGYIPFSQLLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV 438
            F+P  E RAV+EG+FL+ +     +G  I   S V ATGG S + + +QV++DIFNAPVY+    ++A +G+A RAKH         +KG  GG  + FS+++ S+              LAASPR +A  +Y  M ERY +LE ++
Sbjct:  426 FTPGAEIRAVIEGQFLAKRLHAENLGYHIGSDSRVLATGGASCNKSILQVLSDIFNAPVYILDTTNSACLGSAYRAKH--------VSKGCEGGDKVAFSEIVKSAP----------AYQLAASPRLEAHKIYTKMLERYKELELQI 554          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20357.5272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR75_9PHAE6.740e-2973.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEA2_9STRA3.560e-2550.00Phosphoribosylformylglycinamidine cyclo-ligase n=1... [more]
A0A7S4D9U3_HETAK4.070e-2550.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7G5U6_ECTSI6.160e-2345.14FGGY_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A8J1Y9F9_OWEFU1.640e-1839.04Xylulose kinase n=1 Tax=Owenia fusiformis TaxID=63... [more]
A0A7C5EKG9_9BACT7.810e-1836.99Carbohydrate kinase n=2 Tax=Lentisphaerae bacteriu... [more]
A0A2T7PRN6_POMCA2.400e-1637.67Xylulose kinase n=3 Tax=Pomacea canaliculata TaxID... [more]
A0A7X7J8S5_9BACT3.260e-1637.50Carbohydrate kinase n=1 Tax=Lentisphaerae bacteriu... [more]
A0A7V4LS16_9BACT9.130e-1634.72FGGY_C domain-containing protein n=1 Tax=Verrucomi... [more]
UPI00142597DE1.560e-1538.78xylulose kinase-like isoform X1 n=2 Tax=Anneissia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20357contigH-paniculata_contig20357:2480..3434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog2880.D7FW01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.xylulokinase activity
EggNOG OGsCOG1070@1,KOG2531@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.9175513-CDS-H-paniculata_contig20357:2479..26261622929528.9175513-CDS-H-paniculata_contig20357:2479..2626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20357 2480..2626 +
1691480900.0384324-CDS-H-paniculata_contig20357:2479..26261691480900.0384324-CDS-H-paniculata_contig20357:2479..2626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20357 2480..2626 +
1622929528.938921-CDS-H-paniculata_contig20357:3143..34341622929528.938921-CDS-H-paniculata_contig20357:3143..3434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20357 3144..3434 +
1691480900.0503724-CDS-H-paniculata_contig20357:3143..34341691480900.0503724-CDS-H-paniculata_contig20357:3143..3434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20357 3144..3434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20357.5272.1prot_H-paniculata_contig20357.5272.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20357 2480..3434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20357.5272.1

>prot_H-paniculata_contig20357.5272.1 ID=prot_H-paniculata_contig20357.5272.1|Name=mRNA_H-paniculata_contig20357.5272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
EPFSPAEEARAVVEGRFLSMQGRLLRMGIPPPSAVFATGGGSNSPATMQV
IADIFNAPVYLKTVHDAAAVGAALRAKHGWLCAQQKEAKGSGGGYIPFSQ
LLGSSADGDDAGGVRDGLWLAASPREDAAAVYQGMAERYLKLEAEV
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mRNA from alignment at H-paniculata_contig20357:2480..3434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20357.5272.1 ID=mRNA_H-paniculata_contig20357.5272.1|Name=mRNA_H-paniculata_contig20357.5272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=955bp|location=Sequence derived from alignment at H-paniculata_contig20357:2480..3434+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCTTTTCGCCGGCAGAGGAGGCCCGAGCTGTTGTGGAAGGGAGATT TTTGTCCATGCAAGGGCGCCTGCTAAGAATGGGCATACCCCCTCCCAGCG CCGTGTTTGCTACGGGGGGCGGTTCCAACAGCCCAGCGACCATGCAGGTG GAGTCGGTCACCCCATCTATCCACATGCCTCAAGCCTAAAGAAAACCAAG GACCAAGTTCATCTATACCATAATATAGCACATTAAACCTTTTTGTTTTT ACAGTCCACTAGAGGACAGTAGCGAAGTTTTTCTTCCGTAGTTGTTTGTG TCGCTTTGCATGTAGAGAGAGTTCAGTATCATATAATAGTTCAATATTGT TGTTTTGAGGTCCATGTTTTCATATTGTATCCTTGACATACATCCAAACA ATTGTACCTCCTTGGGATACCTTGCCACAACAATCCCTACATGCCGATGA CGAACTTTAGTCATGACAACCCCCGCCCCCCCAGACACCTTTTGGAGCCA TATTTGGCAACGTAAGAAGAAGGTAAAAGCCATCGGAGACGGCTATGATA GGAATGTAGTTCCATCGTCTCGAGGATGCATGGTCAATGGTCCAACAACT ATGAGATGCACAACATGACTACGCCCCCCTCTGCCGCACCCTGCTGATGT TTGTATTTTCCCAGGTCATTGCCGACATTTTCAACGCCCCCGTATATCTC AAAACAGTCCATGACGCAGCGGCCGTCGGGGCCGCCCTACGAGCAAAGCA CGGCTGGCTTTGCGCACAGCAAAAAGAGGCCAAGGGCAGCGGCGGGGGAT ACATTCCGTTTTCGCAACTACTGGGGTCGTCCGCAGATGGTGATGACGCC GGCGGAGTCCGGGACGGATTGTGGTTGGCTGCGTCGCCGAGGGAGGATGC TGCTGCTGTGTATCAGGGTATGGCGGAGAGGTACTTGAAGCTGGAGGCAG AAGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig20357:2480..3434+

>mRNA_H-paniculata_contig20357.5272.1 ID=mRNA_H-paniculata_contig20357.5272.1|Name=mRNA_H-paniculata_contig20357.5272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig20357:2480..3434+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCTTTTCGCCGGCAGAGGAGGCCCGAGCTGTTGTGGAAGGGAGATT
TTTGTCCATGCAAGGGCGCCTGCTAAGAATGGGCATACCCCCTCCCAGCG
CCGTGTTTGCTACGGGGGGCGGTTCCAACAGCCCAGCGACCATGCAGGAG
CCCTTTTCGCCGGCAGAGGAGGCCCGAGCTGTTGTGGAAGGGAGATTTTT
GTCCATGCAAGGGCGCCTGCTAAGAATGGGCATACCCCCTCCCAGCGCCG
TGTTTGCTACGGGGGGCGGTTCCAACAGCCCAGCGACCATGCAGGTCATT
GCCGACATTTTCAACGCCCCCGTATATCTCAAAACAGTCCATGACGCAGC
GGCCGTCGGGGCCGCCCTACGAGCAAAGCACGGCTGGCTTTGCGCACAGC
AAAAAGAGGCCAAGGGCAGCGGCGGGGGATACATTCCGTTTTCGCAACTA
CTGGGGTCGTCCGCAGATGGTGATGACGCCGGCGGAGTCCGGGACGGATT
GTGGTTGGCTGCGTCGCCGAGGGAGGATGCTGCTGCTGTGTATCAGGGTA
TGGCGGAGAGGTACTTGAAGCTGGAGGCAGAAGTTGTCATTGCCGACATT
TTCAACGCCCCCGTATATCTCAAAACAGTCCATGACGCAGCGGCCGTCGG
GGCCGCCCTACGAGCAAAGCACGGCTGGCTTTGCGCACAGCAAAAAGAGG
CCAAGGGCAGCGGCGGGGGATACATTCCGTTTTCGCAACTACTGGGGTCG
TCCGCAGATGGTGATGACGCCGGCGGAGTCCGGGACGGATTGTGGTTGGC
TGCGTCGCCGAGGGAGGATGCTGCTGCTGTGTATCAGGGTATGGCGGAGA
GGTACTTGAAGCTGGAGGCAGAAGTT
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