mRNA_H-paniculata_contig20354.5271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20354.5271.1
Unique NamemRNA_H-paniculata_contig20354.5271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.190e-70
Identity = 131/175 (74.86%), Postives = 148/175 (84.57%), Query Frame = 3 
Query:   81 SRNKEEERQIKEWVDSLPGADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAAN-GKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVS 602
            S+ KEEER IKEW D LPGADL  + PLRGDF+ EHDN AEELLANMEFR TDH SERQLKLDVIAVYNHRLDERE+RKRFV+EHNLLDYKK     + G+KR K+DREL+A+LRP ARF +  +HEELIDNLLLAKKMR RIEQLQ YR+NGITTLAEG EFE+ KK+R EE++
Sbjct:  292 SKVKEEERLIKEWADKLPGADLSVFLPLRGDFDHEHDNAAEELLANMEFRPTDHASERQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQQNNSAGRKRHKDDRELIAKLRPLARFSTPADHEELIDNLLLAKKMRMRIEQLQVYRQNGITTLAEGAEFEIAKKKRQEELA 466
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 2.870e-70
Identity = 128/182 (70.33%), Postives = 155/182 (85.16%), Query Frame = 3 
Query:   57 RKRKAQQTSRNKEEERQIKEWVDSLPGADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVS 602
            R+RKA + ++ KEEER+I+EW + LPGADL  Y PLRGDF+ EHD+TAEELLANMEFR TDH SE+QLKLDVIAVYNHRLDERE+RK+FV+E+NLLDYKKP      KKR +EDREL+ARLRPFARF S +EH+ELIDNL+ AKK+RARIE LQ YR+NGITT+AEG EF+  ++RR EE++
Sbjct:  300 RRRKADKVNKAKEEEREIREWTEKLPGADLSVYAPLRGDFDHEHDDTAEELLANMEFRPTDHASEKQLKLDVIAVYNHRLDEREKRKKFVIENNLLDYKKP--PPGSKKRSREDRELVARLRPFARFSSAKEHDELIDNLIAAKKIRARIETLQMYRQNGITTIAEGIEFDKARQRRQEELA 479
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: A0A3R6XSD6_9STRA (Transcriptional adapter n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XSD6_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.060e-46
Identity = 90/157 (57.32%), Postives = 120/157 (76.43%), Query Frame = 3 
Query:  135 GADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVSM 605
            G+ L GY PLRGDF+VEHDN AE +LA+MEF   DHP+ER+LKL VIA+YN +LDERERRK+FVVEH LLDYKK     N ++R K++REL+ +LRPFARFHS +EH+ L++ L+ A ++R +I  LQ YR +G+ TLAE + +E  KK+R  E ++
Sbjct:  148 GSALAGYMPLRGDFDVEHDNDAEVILADMEFADDDHPTERELKLKVIAIYNAKLDERERRKKFVVEHQLLDYKK--YQQNERRRPKDERELVMQLRPFARFHSKDEHDALVEGLVAAMRLRKQIALLQEYRRHGVRTLAEAELYEQDKKKREVEQAL 302
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: W4G8S8_9STRA (Transcriptional adapter n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8S8_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.230e-45
Identity = 94/173 (54.34%), Postives = 126/173 (72.83%), Query Frame = 3 
Query:  135 GADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVSMFLSLSLSPFLSRTKFN 653
            G+ L GY PLRGDF+VEHDN AE +LA+MEF   DHP+ER+LKL VIA+YN +LDERERRK+FVVEH LLDYKK     N ++R K++REL+ +LRPFARFHS +EH+ L++ L+ A ++R +I  LQ YR +G+ TLAE + +E  KK+R  E ++  S     +L  +K N
Sbjct:  158 GSALAGYMPLRGDFDVEHDNDAEVILADMEFADDDHPTERELKLKVIAIYNAKLDERERRKKFVVEHQLLDYKK--YQQNERRRPKDERELVMQLRPFARFHSKDEHDALVEGLVAAMRLRKQIALLQEYRRHGVRTLAEAELYEQDKKKREVEQALQKSRESVSYLYESKGN 328
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: A0A1W0A0X6_9STRA (Transcriptional adapter n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0X6_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.340e-45
Identity = 97/205 (47.32%), Postives = 136/205 (66.34%), Query Frame = 3 
Query:  135 GADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVSMFLSLSLSPFLSRTKFNFIDGYRIAIVAMEND*FGSDDNRSGGCLD*SP 749
            G  L GY PLRGDF+VEHDN AE +LA+MEF   DHP+ER+LKL VI++YN +LDERERRK+FV+EH LLDYKK       ++R KE+RE++A++RPFARFHS E+H+  +  L+ A ++R +I QLQ YR +GI TLAE + FE+ KK++  E ++  S   + +L  +  N   G R+      N     +   + G +D +P
Sbjct:  153 GGALAGYLPLRGDFDVEHDNDAELILADMEFHDDDHPTERELKLKVISIYNAKLDERERRKKFVIEHGLLDYKKYQQVE--RRRPKEEREIIAQVRPFARFHSKEDHDTFVSGLIAAMRLRKQIAQLQEYRMHGIRTLAEAEMFELDKKKKETEQALQKSRESAAYLYDSARN-ASGNRVRNSRWLNREQDGEKTNASGIIDGAP 354
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: A0A024UKU7_9STRA (Transcriptional adapter n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKU7_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.670e-45
Identity = 93/173 (53.76%), Postives = 126/173 (72.83%), Query Frame = 3 
Query:  135 GADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVSMFLSLSLSPFLSRTKFN 653
            G+ L GY PLRGDF+VEHDN AE +LA+MEF   DHP+ER+LKL VIA+YN +LDERERRK+FV+EH LLDYKK     N ++R K++REL+ +LRPFARFHS EEH+ L+  L+ A ++R +I  LQ YR +GI TLAE + +E  K++R  + ++  S   + +L  +K N
Sbjct:  153 GSALAGYMPLRGDFDVEHDNDAELILADMEFSEDDHPTERELKLKVIAIYNAKLDERERRKKFVIEHQLLDYKK--YQQNERRRPKDERELVMQLRPFARFHSKEEHDALVGGLVAAMRLRKQIALLQEYRRHGIRTLAEAELYEQDKRKREVDQALQKSRESASYLYESKGN 323
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: A0A6G0XE69_9STRA (Transcriptional adapter n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE69_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.470e-44
Identity = 90/171 (52.63%), Postives = 122/171 (71.35%), Query Frame = 3 
Query:  135 GADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVSMFLSLSLSPFLSRTK 647
            G+ L GY PLRGDF+VEHDN AE +LA+MEF   DHP+ER+LKL VI++YN +LDERERRK+FV+EH LLDYKK     N ++R K++REL+  +RPFARFHS E+H+  +  L+ A ++R +I  LQ YR  GI TLAE + +E  KK+R  + ++  S   +P+L   K
Sbjct:  145 GSALAGYMPLRGDFDVEHDNDAELILADMEFHEDDHPTERELKLKVISIYNAKLDERERRKKFVIEHQLLDYKK--YQQNERRRPKDERELVMHMRPFARFHSKEDHDAFLSGLIAAMRLRKQIALLQEYRRRGIRTLAEAELYEQDKKKRETDQALQKSRESAPYLYDAK 313
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: A0A067C7N6_SAPPC (Transcriptional adapter n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C7N6_SAPPC)

HSP 1 Score: 168 bits (426), Expect = 3.290e-44
Identity = 91/167 (54.49%), Postives = 122/167 (73.05%), Query Frame = 3 
Query:  135 GADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVSMFLSLSLSPFL 635
            G  L GY PLRGDF+VEH+N AE +LA+MEF   DHP+ER+LKL VIA+YN +LDERERRK+FV+EH LLDYKK       ++R KE+REL+A++RPFARFHS E+H+  +  LL A ++R +I  LQ YR+ GI TLAE + +E+ KK+R  E ++  S   + +L
Sbjct:  151 GGALAGYMPLRGDFDVEHENDAELILADMEFHDDDHPTERELKLKVIAIYNAKLDERERRKKFVIEHGLLDYKKYQQVE--RRRPKEERELIAQVRPFARFHSKEDHDTFVSGLLAAMRLRKQIALLQEYRKRGIRTLAEAEMYELDKKKRETEQALQKSRESAAYL 315
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: A0A485LTC7_9STRA (Transcriptional adapter n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTC7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.390e-43
Identity = 89/171 (52.05%), Postives = 122/171 (71.35%), Query Frame = 3 
Query:  135 GADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVSMFLSLSLSPFLSRTK 647
            G+ L GY PLRGDF+VEHDN AE +LA+MEF   DHP+ER+LKL VI++YN +LDERERRK+FV+EH LLDYKK     N ++R K++REL+ +LRPFARFHS +EH+  +  L+ + ++R +I  LQ YR  GI TLAE + +E  KK+R  + ++  S   + +L   K
Sbjct:  151 GSALAGYMPLRGDFDVEHDNDAELILADMEFNDDDHPTERELKLKVISIYNAKLDERERRKKFVIEHQLLDYKK--YQQNERRRPKDERELVMQLRPFARFHSKDEHDNFVAGLIASMRLRKQIALLQEYRRRGIRTLAEAELYEQDKKKRETDQALQKSRESASYLYEAK 319
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BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Match: F0WRK6_9STRA (Transcriptional adapter n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WRK6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.870e-43
Identity = 99/208 (47.60%), Postives = 139/208 (66.83%), Query Frame = 3 
Query:  120 VDSLPGADLGGYFPLRGDFEVEHDNTAEELLANMEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAAANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQTYRENGITTLAEGQEFEMRKKRRTEEVSMFLSLSLSPFL---SRTKFNFIDG---YRIAIVAMEND*FGSDDNRS 725
            V  + G +L GY PLRGDF+VE+DN AE +L++MEF   D P+ER+LKL VI +YN +LDER RRK+FV+EH LLDYKK       ++R KE+RE++A++RPFARFH+ EEHE+LI  L+ A +++ +I  LQ YR NGI TLAE + +E  KK+R  E++M      + +L   +RT  N  D    YR  +  + +D  GSD + +
Sbjct:  243 VKQMVGTELAGYMPLRGDFDVEYDNDAEVILSDMEFAEDDTPTERELKLKVIEIYNSKLDERARRKQFVIEHGLLDYKKH--QQTERRRPKEEREIIAQMRPFARFHTREEHEDLIQGLITAMRLQKQIVLLQEYRRNGIKTLAEAEMYEQEKKKRETELAMQKQRDDASYLYDSTRTNSNGKDRASRYRERLTGLHDD-EGSDTSSN 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20354.5271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV7_ECTSI1.190e-7074.86Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JL08_9PHAE2.870e-7070.33Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3R6XSD6_9STRA3.060e-4657.32Transcriptional adapter n=3 Tax=Aphanomyces astaci... [more]
W4G8S8_9STRA1.230e-4554.34Transcriptional adapter n=3 Tax=Aphanomyces astaci... [more]
A0A1W0A0X6_9STRA3.340e-4547.32Transcriptional adapter n=1 Tax=Thraustotheca clav... [more]
A0A024UKU7_9STRA3.670e-4553.76Transcriptional adapter n=2 Tax=Aphanomyces invada... [more]
A0A6G0XE69_9STRA1.470e-4452.63Transcriptional adapter n=1 Tax=Aphanomyces euteic... [more]
A0A067C7N6_SAPPC3.290e-4454.49Transcriptional adapter n=2 Tax=Saprolegnia TaxID=... [more]
A0A485LTC7_9STRA2.390e-4352.05Transcriptional adapter n=1 Tax=Aphanomyces stella... [more]
F0WRK6_9STRA2.870e-4347.60Transcriptional adapter n=1 Tax=Albugo laibachii N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20354contigH-paniculata_contig20354:69..3442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
EggNOG OGsCOG5114@1,KOG0457@2759
EC1.13.11.27
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400,ko04147,ko04812
Exons4
Model size1194
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue8.7e-44
Seed eggNOG ortholog2880.D7FRV7
Preferred nameTADA2A
KEGG rclassRC00505,RC00738,RC02795
KEGG koko:K00457,ko:K03012,ko:K10391,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443,R01372,R02521
KEGG Pathwayko00130,ko00230,ko00240,ko00350,ko00360,ko01100,ko03020,ko05016,ko05169,map00130,map00230,map00240,map00350,map00360,map01100,map03020,map05016,map05169
KEGG ModuleM00044,M00180
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000125,GO:0000183,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000981,GO:0001786,GO:0001932,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007049,GO:0007155,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009405,GO:0009409,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009733,GO:0009735,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010520,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010810,GO:0010811,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022610,GO:0030155,GO:0030447,GO:0031056,GO:0031058,GO:0031063,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031505,GO:0031589,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035065,GO:0035066,GO:0035327,GO:0035690,GO:0036211,GO:0040007,GO:0040020,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042710,GO:0042789,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043708,GO:0043709,GO:0043900,GO:0043902,GO:0043966,GO:0043967,GO:0044010,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0045229,GO:0045785,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0060631,GO:0065007,GO:0065008,GO:0070013,GO:0070461,GO:0070887,GO:0071214,GO:0071470,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072341,GO:0072686,GO:0080090,GO:0090043,GO:0090304,GO:0090311,GO:0090605,GO:0090609,GO:0097159,GO:0097659,GO:0104004,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1905368,GO:1990234,GO:1990414,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.positive regulation of histone acetylation
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20354.5271.1prot_H-paniculata_contig20354.5271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20354 562..2780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.788943-UTR-H-paniculata_contig20354:68..5611622929528.788943-UTR-H-paniculata_contig20354:68..561Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20354 69..561 -
1691480899.9535692-UTR-H-paniculata_contig20354:68..5611691480899.9535692-UTR-H-paniculata_contig20354:68..561Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20354 69..561 -
1622929528.8532112-UTR-H-paniculata_contig20354:2780..27921622929528.8532112-UTR-H-paniculata_contig20354:2780..2792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20354 2781..2792 -
1691480900.0177274-UTR-H-paniculata_contig20354:2780..27921691480900.0177274-UTR-H-paniculata_contig20354:2780..2792Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20354 2781..2792 -
1622929528.8642087-UTR-H-paniculata_contig20354:3236..34421622929528.8642087-UTR-H-paniculata_contig20354:3236..3442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20354 3237..3442 -
1691480900.0279863-UTR-H-paniculata_contig20354:3236..34421691480900.0279863-UTR-H-paniculata_contig20354:3236..3442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20354 3237..3442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.8075569-CDS-H-paniculata_contig20354:561..7661622929528.8075569-CDS-H-paniculata_contig20354:561..766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20354 562..766 -
1691480899.9743764-CDS-H-paniculata_contig20354:561..7661691480899.9743764-CDS-H-paniculata_contig20354:561..766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20354 562..766 -
1622929528.8216722-CDS-H-paniculata_contig20354:1925..20291622929528.8216722-CDS-H-paniculata_contig20354:1925..2029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20354 1926..2029 -
1691480899.9895158-CDS-H-paniculata_contig20354:1925..20291691480899.9895158-CDS-H-paniculata_contig20354:1925..2029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20354 1926..2029 -
1622929528.837575-CDS-H-paniculata_contig20354:2606..27801622929528.837575-CDS-H-paniculata_contig20354:2606..2780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20354 2607..2780 -
1691480900.0043395-CDS-H-paniculata_contig20354:2606..27801691480900.0043395-CDS-H-paniculata_contig20354:2606..2780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20354 2607..2780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20354.5271.1

>prot_H-paniculata_contig20354.5271.1 ID=prot_H-paniculata_contig20354.5271.1|Name=mRNA_H-paniculata_contig20354.5271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MEFRATDHPSERQLKLDVIAVYNHRLDERERRKRFVVEHNLLDYKKPLAA
ANGKKRLKEDRELMARLRPFARFHSMEEHEELIDNLLLAKKMRARIEQLQ
TYRENGITTLAEGQEFEMRKKRRTEEVSMFLSLSLSPFLSRTKFNFIDGY
RIAIVAMEND*
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mRNA from alignment at H-paniculata_contig20354:69..3442-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20354.5271.1 ID=mRNA_H-paniculata_contig20354.5271.1|Name=mRNA_H-paniculata_contig20354.5271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3374bp|location=Sequence derived from alignment at H-paniculata_contig20354:69..3442- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCACTGCAATCGTCAATGCCTCAGAGCCCAAAGGTTCCGCTCAGAGC
CGTAAGCGAAAGCGTAAGGCGCAACAGACCAGCCGCAACAAAGAGGAGGA
GCGGCAGATCAAGGAGTGGGTCGATAGTCTCCCTGGAGCGGATCTGGGCG
GGTACTTTCCTCTGCGCGGTGACTTCGAAGTGGAGCATGACAATACTGCT
GAGGAGGTGTGAAAAAAAGAAAAAGAGGATAAAAATGATGGTGTTTAGTT
TTGTTTTTGATACGAGACACATAAGACAACACACACACACATACACACAT
ATATATATATATATATATATATATATATATATTGCTGAGCAGCAGCAATG
TAGGCGATTTGTTGTAGAGGTGATGGAGTGATCTCTCCTTTCTTCTTGTC
TCTGTCTTGAGAAGAGCATTCGATGATCCGTCGGTACTTTGGGATCTTTG
CCGAAAGAGCAAGAATGGTATAACTCGTGGCTTTATTCTTGCACTCCGCT
CCGAATGTCTTGGTAATGATGTGTAATATATGTGTACTGCGACGTTTACC
TGTAACCCTGTGCGAGCCAGACGTGGACAATTTCGCGGCGTTTGTTTTTA
TGTGTCACTTATTTTTATTTTTTATTTTTTTGTCCTCGGTCTGGTTACAG
CTTCTCGCTAACATGGAGTTTCGCGCCACAGACCATCCCAGCGAGCGCCA
GCTGAAGCTCGACGTTATCGCTGTCTACAACCACCGCCTGGACGAACGAG
AAAGGAGGAAGCGCTTTGTCGTGGAGCACAACCTGCTGGACTACAAGAAG
CCTCTAGCAGCCGCCAACGGGAAGAAGAGACTAAAGGTGTGTTATTGTCT
GTAACATGGAGACCAAATTGTCTCTCTTACGTTCTGAACCCAAGGCACTG
CGTGTCTGCGAAGCTACAGGAAGTCGTGAAGAGCTCACTGCAGCTTACAC
ACCACAACAAAATGCATGTCCGTCGAACAGGCTACAGGGATATGATGACT
CGATATTTGTTCGTGCCCGAAGAATCTTGTTGATGCGAGGCTCTAGAAAA
TCACTTGATAAGCCTGGATTTGGGTTGCTGCGGTATGTAATCAGGCATTG
CGCAAGTAGGTAGCTGTTGTGCGTTGGCGGTAAGTACGTGTCTCGGTGTC
AATATCCTATACACTACGAGCTACGGTATGGTGGTATTGGGCTATGATGG
TGGATGACCACGGTGTGAGAGACGGCTAGAGGAAGACATTTAATTCCTCG
TAAACGGATGTTTTACAGTATTGTTTTTTGCTGACATGTCCTGGCCTTGT
TGAGGGTTATTGGTGGTGATGATTGTAGTCTTGCCACTTGTGCGAATGGA
TACATGAAACGGTCTTTTTTTTTCGCCGTGTGTGTGTGTGTGTGTGTGTT
TCAATTGGTTCAGGAGGATCGTGAGTTGATGGCTAGACTCCGCCCGTTCG
CGCGATTCCACTCGATGGAGGAGCACGAGGAACTGATCGACAATCTACTG
CTTGCCAAAAAGATGCGGTACGTGTTGAACGTCTGTGGTGATTTGGGTTC
GTTTTTACACATTGCAGTACAATTTAAAACTCTTTATGCAGTAACGCTAG
TACAGATGAAAGTCTAATAATGTAGTCATCCACTTTACCTGATTTATCTC
TCTTTTTTTTTTTTTTTTAATGTTGCGTTTGGTAATGGATGGGTGAACTA
GTTTTTTTTTTTTTTTTAACCTCCGGAAGGCTGAGGCAAAAACCTCTATC
CGATGCTTCCATACTTGAGAGTATTTTACCAAAGTATTCCTACATTTCCT
TTTACAAAGCAGAGTTATGTATTCCTCTGCGGGGTAGGCGCCACCCCGGT
TCGGCCGAACCAAGTAGGCAGTGTGGGGGTTGCACCCACTAAAAGACCTC
TGACTAGACTTCCCGTCATGCTCAGTTCACCAGCTACCCTACCCGTTCGG
GCGTGGGTCCGTGGTTGGTGTTGATGTCAATTGATGAGGGGTTTATTAGT
TCTTTTCCACCTCTTTTGTTCAGTTAAATAAATACTGTTGTCTTATGGGT
ATTTATCCAAATATATATTCCGTTGAACCTTTAAATACTATTACCTTTTA
TTTTATTTTTATTACAAATATAATAATGACCGTAGTCACCATAATGCTAA
GTGAGTCATTTTTTTTATTTTTTTTTATCATCGTTGAATTTCCCCTTTAC
ACCGTGTGGGTTATTTGAGTTTTTGGGTAATGTATTATATATCGGTTGGC
CCCATGTATGTTATTCACCGATAAATCAGTCAGTCAGTCAGACATTTGAT
GTTATTGTCAGTCCTTTGATATCATTTTAATGAATGGTCCACTGTCATGG
CCGTGAACAAGGAGGTGTTGTTGTCTGGTGGCAGGTCTTTAGTTTGTTGC
TGTCACGACTCGAACGTTGTCATAAATAGTGATTCTTGTTGAGCCATGCT
TAGATATTTTCACAGATGAAAGCAGATTTGTTTTAATCTTATACTTTGGG
CGTACGTATGTCCCGTGCTGATGAAGACGATTTTGTGTTTGTGTGTGTCT
GTATCTTCGACCCTCGCTCGCAAGTAGGCACGAGCGTTTCCGTTTTATTT
TTGATAGGAAAGTGATGGTGATTTAATATCTGCCGTAATTTTTACTTGCA
TATATTTATATATACTTAATTTGCAGTGCCAGGATCGAGCAGCTGCAGAC
GTACCGCGAGAACGGCATCACCACTCTGGCCGAAGGACAGGAGTTCGAGA
TGCGCAAAAAGCGCAGGACGGAAGAGGTGAGCATGTTCCTCTCTCTCTCT
CTCTCTCCATTTCTTTCTCGGACTAAATTCAATTTTATTGATGGTTACCG
AATTGCAATCGTAGCTATGGAGAATGACTAGTTTGGGTCAGATGATAATC
GGAGCGGGGGATGCTTGGACTGATCCCCCCAATTTGGATTCACAGTAGTT
GATGGAATCGACATGAAGCTATGGAAAATGACTAGTTTGGTTCAGATGAC
AATAGGAGGGGTGGATGGTTGGATTGATCCTCGCCGAACCAGGATTCTAG
TTCGGGTTGGGTGAATGGCTACATATAGGAATGGGGCGTGTATTGGCTAT
TTGTAAAAAATAAAAAATAAAAAAATGAAGCATCGAAAAATCTCCCAATC
CCCGACAATTGAAATCGACGTCATGATATGAGTTTCCGCCGCGCTGCTTC
CTACACGAAACTTATGTACGACAGATGTGGTTGTCTTGTTGTTTCCTTTT
GTTTGTACCACTGCTCATTCCCTCTTGTTTTCAAAAGGAAGTGTGTGTGT
TTGTGTGTGTTTGCTCCGGGTTAGTGCGTCCGTTCCCATTTTTTTTTTTT
TTTTAAACCCCCGGAAGGCTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig20354:69..3442-

>mRNA_H-paniculata_contig20354.5271.1 ID=mRNA_H-paniculata_contig20354.5271.1|Name=mRNA_H-paniculata_contig20354.5271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig20354:69..3442- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTTTCGCGCCACAGACCATCCCAGCGAGCGCCAGCTGAAGCTCGA
CGTTATCGCTGTCTACAACCACCGCCTGGACGAACGAGAAAGGAGGAAGC
GCTTTGTCGTGGAGCACAACCTGCTGGACTACAAGAAGCCTCTAGCAGCC
GCCAACGGGAAGAAGAGACTAAAGATGGAGTTTCGCGCCACAGACCATCC
CAGCGAGCGCCAGCTGAAGCTCGACGTTATCGCTGTCTACAACCACCGCC
TGGACGAACGAGAAAGGAGGAAGCGCTTTGTCGTGGAGCACAACCTGCTG
GACTACAAGAAGCCTCTAGCAGCCGCCAACGGGAAGAAGAGACTAAAGGA
GGATCGTGAGTTGATGGCTAGACTCCGCCCGTTCGCGCGATTCCACTCGA
TGGAGGAGCACGAGGAACTGATCGACAATCTACTGCTTGCCAAAAAGATG
CGGAGGATCGTGAGTTGATGGCTAGACTCCGCCCGTTCGCGCGATTCCAC
TCGATGGAGGAGCACGAGGAACTGATCGACAATCTACTGCTTGCCAAAAA
GATGCGTGCCAGGATCGAGCAGCTGCAGACGTACCGCGAGAACGGCATCA
CCACTCTGGCCGAAGGACAGGAGTTCGAGATGCGCAAAAAGCGCAGGACG
GAAGAGGTGAGCATGTTCCTCTCTCTCTCTCTCTCTCCATTTCTTTCTCG
GACTAAATTCAATTTTATTGATGGTTACCGAATTGCAATCGTAGCTATGG
AGAATGACTAGTGCCAGGATCGAGCAGCTGCAGACGTACCGCGAGAACGG
CATCACCACTCTGGCCGAAGGACAGGAGTTCGAGATGCGCAAAAAGCGCA
GGACGGAAGAGGTGAGCATGTTCCTCTCTCTCTCTCTCTCTCCATTTCTT
TCTCGGACTAAATTCAATTTTATTGATGGTTACCGAATTGCAATCGTAGC
TATGGAGAATGACTAG
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