mRNA_H-paniculata_contig1082.527.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1082.527.1
Unique NamemRNA_H-paniculata_contig1082.527.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: D7G8E8_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E8_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 5.650e-105
Identity = 185/366 (50.55%), Postives = 218/366 (59.56%), Query Frame = 1
Query:    1 RLEGQWISAIKRR-RVAMYSIPGEKAHDPAWRCQDAGMIVAPFDRQEDQALFAVFDGHGSNGRQAAKECMERLPKYLVPAS-YSTDPAAAFRRACHELQHDLAVGGTTTEYYARSGTTLCAALLVGRRLTVANVGDSGCLRISRQPSPGA---------------GRSRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGR----------------------LIVERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVPRVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPEDIRKV 981
            RLEG+W SA      V +YSI GEKAHDP W+ QDAG+++APFDR+E QALFA+FDGHG NG QA++ECMERLPK+L  AS  S  PA+A RR+C  L HDLA G        RSGTTLCAA+L GRRLTVANVGDSGCLR+SR  +  +               G++ L   +SD G   V  + GG                                      L+ ERLSRDHKPE   ELERI+AAGG+VFPLP +  G                 G  +  +     R   A +PRVW A G GPGLAMSRSIGDKMAHSVGVT+EPEI E DL+  +D+MLV ASDGVWDVL+ EDIRKV
Sbjct:    3 RLEGRWASAGSTEPNVGIYSIAGEKAHDPLWKNQDAGLVIAPFDRREGQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATG--VAGDCGRSGTTLCAAVLAGRRLTVANVGDSGCLRLSRSTAAASXXXXXXXXXXXXXIPGKAAL---ASDRGTPDVVDKAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVTERLSRDHKPESKGELERIRAAGGIVFPLPRSGSGGXXXXXXXXXXXXXXXEGSKKGLKT--AARGIAAGIPRVWTASGDGPGLAMSRSIGDKMAHSVGVTYEPEITEFDLDKRSDVMLVFASDGVWDVLSAEDIRKV 361          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A1R2BZE2_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BZE2_9CILI)

HSP 1 Score: 108 bits (271), Expect = 3.610e-23
Identity = 90/282 (31.91%), Postives = 121/282 (42.91%), Query Frame = 1
Query:  139 DQALFAVFDGHGSNGRQAAKECMERLPKYLVPASYSTD-PAAAFRRACHELQHDLAVGGTTTEYYARSGTTLCAALLVGRRLTVANVGDSGCLRISRQPSPGAGRSRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLIVERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVPRVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPEDIRKV 981
            D  +FAV DGHG NG   +     R P  L+   Y    P  A   +C  L  ++      T +   SG+T  + ++ G++L  ANVGDS  L          GR   D                    +TG +         +   LSRDHKP  +DE ERI  AGG V    + +            G+P                  FG    RVW      PGLAMSRS GDK+A SVGV   PEI+E ++N   D  +V+ SDG+++ LT ED+ K+
Sbjct:  156 DTCIFAVADGHGVNGEHVSGYIKNRFPLILLSNPYFLSAPIRALTASCIRLNKEINSQDFDTNF---SGSTFVSIIIRGKKLWCANVGDSRAL---------LGRQLTD--------------------KTGTKGN---CNHWMAIALSRDHKPNENDESERIYKAGGRVEAYQDEN------------GNP------------------FGPS--RVWLKSQNLPGLAMSRSFGDKVASSVGVICHPEILEFEIN-NDDKFIVIGSDGIFEFLTNEDVVKI 369          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A2P6TSH7_CHLSO (Protein-serine/threonine phosphatase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSH7_CHLSO)

HSP 1 Score: 105 bits (263), Expect = 4.750e-22
Identity = 88/310 (28.39%), Postives = 127/310 (40.97%), Query Frame = 1
Query:   40 RVAMYSIPGEKAHDPAWRCQDAGMIVAPFDRQEDQALFAVFDGHGSNGRQAAKECMERLPKYLV-PASYSTDPAAAFRRACHELQHDLAVGGTTTEYYARSGTTLCAALLVGRRLTVANVGDSGCLRISRQPSPGAGRSRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLIVERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVPRVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPE 966
            R A  S  G     P    QDA           +   F VFDGHG  G + A+   ++LP  L    + +++P  A   A   +   L            SGTT C A+L GR L +ANVGDS  + ++ +P+ G+        ++  G E      G G  E            L+   LS+D  P   DE  R+  AG  V  L                   GL+   +    NE    D     PR+W  +G  PG A +RSIGD  A  +GV  +PE++   L       +V+A+DGVW+ ++ +
Sbjct:   70 RYAFLSQRGYYPDSPDKANQDAVRAAEGLGGNAEAHFFGVFDGHGEFGTECAQFVKDKLPTVLAGEPTLASNPDKALHSALVSVNSQLHASPVDDSL---SGTTACCAVLQGRTLYIANVGDSRAV-VAERPAAGS-------KAASEGSEGAGSSSGSGATE------------LVARDLSQDQTPFRLDECHRVLQAGARVLTLDQLE---------------GLKDPGLPCWTNEA---DCDGDPPRLWSPNGMFPGTAFTRSIGDSAAEDIGVIPDPEVLATQLGPQ-HAFVVLATDGVWEFISSQ 337          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A7J6QQW4_PEROL (PPM-type phosphatase domain-containing protein n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QQW4_PEROL)

HSP 1 Score: 105 bits (263), Expect = 4.990e-22
Identity = 87/281 (30.96%), Postives = 125/281 (44.48%), Query Frame = 1
Query:  136 EDQALFAVFDGHGSNGRQAAKECMERLPKYLVP-ASYSTDPAAAFRRACHELQHDLAVGGTTTEYY--ARSGTTLCAALLVGRRLTVANVGDSGCLRISRQPSPGAGRSRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLIVERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVP-RVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPE 966
            ++  +F VFDGHG  G   +  C + LP  L+    + TDPAAAF RA  +  H L    +    +  + SGTT    +     +  A VGDS              R+ +   ++D                          G ++ E LSRDHKPE DDE  RI++ GG +      S+  G     A   SP +R         +  VR     +P RV+      PGLAMSRS+GD +  S GVT+EPEI    ++   D  +V+ SDGVW+ ++ +
Sbjct:  117 DELGMFGVFDGHGPFGHDVSSFCHDALPGLLIKDEEFYTDPAAAFARAFRDT-HLLCEQASAKGKFDCSLSGTTATVVMTRDETVYCAWVGDS--------------RAVIATTNAD--------------------------GEVVAEDLSRDHKPERDDEKTRIRSRGGQL------SVAKG-----AADASPRVR--------GDPKVRKLEGDIPYRVFLKGKLYPGLAMSRSLGDSIGVSAGVTYEPEIKIRKIDLARDRFVVLCSDGVWEFISSQ 337          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A835YZ58_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ58_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.460e-22
Identity = 60/135 (44.44%), Postives = 81/135 (60.00%), Query Frame = 1
Query:  574 RLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVPRVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPEDIRK 978
            +L+ DHKP  D E +RI A+GG+V P P  ++         Q G+P   L    A   EG  R  G    RVW   G GPGLAMSRS+GD +AH +GVTHEPE+ +  L+A  D +LV+ SDG+WD+L  E++ +
Sbjct:  385 QLTADHKPNVDSERQRILASGGLVGPTPERAV------MNCQGGAP---LAGAAAAAAEGGARR-GRLPSRVWMPAGDGPGLAMSRSLGDLVAHQIGVTHEPEVCQRVLSAG-DRVLVVGSDGIWDMLPNEEVTE 508          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A1R2CT32_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CT32_9CILI)

HSP 1 Score: 105 bits (261), Expect = 8.160e-22
Identity = 90/286 (31.47%), Postives = 129/286 (45.10%), Query Frame = 1
Query:  124 FDRQEDQALFAVFDGHGSNGRQAAKECMERLPKYLVPASYSTDPAAAFRRACHELQHDLAVGGTTTEYYARSGTTLCAALLVGRRLTVANVGDSGCLRISRQPSPGAGRSRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLIVERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVPRVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPEDIRKV 981
            +DR+   ++F VFDGHG  G + +     RLP  L  +    D  ++ R A   ++ +L     T    + SG+TL   ++ G++L  AN+GDS  +          G    D+ S               + +  V V            LSRDHKP+ ++E  RI   GG VF   +            + G+P   LG                   RVW  D   PGLAMSRS+GD +A SVGV+ EPEI+E DL    D  LV+ SDGV++ L+ E+I K+
Sbjct:  166 YDRE--MSIFGVFDGHGVLGHKVSNYIKSRLPVLLSKSI--RDVRSSLRNAISIIKEEL----PTLIDTSFSGSTLNLVIIKGKKLFCANIGDSRAI---------IGNQVNDIDSKT------------SSGKNWVSVS-----------LSRDHKPDLEEEAARIARCGGRVFSYTD------------EEGNP---LGPA-----------------RVWLKDQNTPGLAMSRSLGDSVAASVGVSSEPEILEYDLTGQ-DKFLVIGSDGVFEFLSNEEIVKL 378          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A1R2CLS4_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CLS4_9CILI)

HSP 1 Score: 100 bits (249), Expect = 3.120e-20
Identity = 85/279 (30.47%), Postives = 127/279 (45.52%), Query Frame = 1
Query:  145 ALFAVFDGHGSNGRQAAKECMERLPKYLVPASYSTDPAAAFRRACHELQHDLAVGGTTTEYYARSGTTLCAALLVGRRLTVANVGDSGCLRISRQPSPGAGRSRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLIVERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVPRVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPEDIRKV 981
            ++F +FDGHG +G + +     RLP  L+ +  + D  ++ + A   ++ +L     T    + SG+TL    + G++L  AN+GDS  +          G    D+ +                 +T    + A +       LSRDHKP+ ++E  RI  AGG V    + S            G+P                    A   RVW  +   PGLAMSRSIGD +A SVGV  EPEIIE +L +  D  LV+ SDGV++ L+ E+I K+
Sbjct:  143 SMFGIFDGHGVHGGRVSNYIKNRLP--LLFSKMTRDVKSSIKSAISIIKEEL----PTLIDTSFSGSTLNVVAIKGKKLFCANIGDSRAI---------VGNQINDISN-----------------KTSSGKKWASVS------LSRDHKPDIEEEAARINRAGGRVLSYFDES------------GNP--------------------AGPARVWLKNQNIPGLAMSRSIGDAIAASVGVISEPEIIEYELTSQ-DKFLVIGSDGVFEFLSNEEIVKL 350          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A1R2CII2_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CII2_9CILI)

HSP 1 Score: 100 bits (248), Expect = 6.750e-20
Identity = 84/312 (26.92%), Postives = 126/312 (40.38%), Query Frame = 1
Query:   40 RVAMYSIPGEKAHDPAWRCQDAGMIVAPFDRQEDQALFAVFDGHGSNGRQAAKECMERLPKYLVPAS--YSTDPAAAFRRACHELQHDLAVGGTTTEYYARSGTTLCAALLVGRRLTVANVGDSGCL--RISRQPSPGAGRSRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLIVERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVP--RVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVL 957
            R++  ++PG    DP   C+        F   E+  L  +FDGHG  GR+ +  C + +  Y       + TDP  A           L   G        SG+T+   ++    +   +VGDS  +   + +  SP                 VV   +   T +  V+     I  L +  L+ D KP  ++EL+RI+AAGGVV                                  E +  D G  V   RVW+ +G  PGLAMSRS+GD +AH +GV   P      +    D  +V+AS+G+WDV+
Sbjct:   63 RISGCALPGV---DPRGECEKECQDTFIFLSHENTILTVLFDGHGKEGRRVSMFCKDYVTNYFNKNHEVFDTDPRGAIEEMIENCDTGLTTSGIDCNL---SGSTVVMVVVNSLGIHAGSVGDSKAILATLPKDNSP-----------------VVLPSYKNSTFKRPVRP----IRSLNIVPLTADQKPNHEEELKRIRAAGGVV----------------------------------EKLADDLGRPVGPYRVWKKNGNLPGLAMSRSVGDTIAHEIGVISTPITHTFPIYLAFDQFIVLASNGIWDVM 313          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A1R2ARX6_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ARX6_9CILI)

HSP 1 Score: 100 bits (248), Expect = 8.200e-20
Identity = 87/301 (28.90%), Postives = 125/301 (41.53%), Query Frame = 1
Query:   91 RCQDAGMIVAPFDRQEDQALFAVFDGHGSNGRQAAKECMERLPKYLVPAS--YSTDPAAAFRRACHELQHDLAVGGTTTEYYAR-SGTTLCAALLVGRRLTVANVGDSGCLRIS---RQPSPGAGRSRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLI-VERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVPRVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPEDI 972
            +C D  M +     + +  L A+FDGHG NG Q    C     KY         +DP             DLA+    T      SGTT    L+    +  A VGDS  +  S   R+P          +  ++   E+ +RR             G+ + R +   +L+RDHKPE ++E ERI+  GG V  L +                 G R+G                   RVW  D   PGL MSRSIGD +A S+GV   P+I  + ++   DL L++ SDG+WD +  +D+
Sbjct:   82 KCIDTCMYL----NENNTILLALFDGHGPNGEQVINFCCSYTSKYYRSQKELIQSDPKNFLINLSETC--DLALRNPETRIDTEFSGTTAVFVLVKDDIIYSACVGDSRAILASYLNREPL----LKITHLEENNALAEIKKRR-------------GSKLQRQVHYTQLTRDHKPEINEEAERIREYGGKVKRLLDYE---------------GNRIGPY-----------------RVWENDSNLPGLTMSRSIGDNVAKSIGVISTPDITSISIDWKNDLFLIVGSDGLWDAMANDDV 327          
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Match: A0A4D9D7H3_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7H3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.780e-19
Identity = 97/334 (29.04%), Postives = 136/334 (40.72%), Query Frame = 1
Query:   43 VAMYSIPGEKAHDPAWRC---QDAGMIVAPFDRQEDQALFAVFDGHGSNGRQAAKECMERLPKYLVPAS-YSTDPAAAFRRACHELQHDLAVGGTTTEYYARSGTTLCAALLVGRRLTVANVGDS---------------GCLRISRQPSPGAGRSRLD-VPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLIVERLSRDHKPECDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNEGIVRDFGAKVP-RVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDLNATTDLMLVMASDGVWDVLTPEDIRKV 981
            V+ Y+   +K   P  R    QDA  ++   +       F V DGHG  G   +      + + L     +  DP  A       L+  L         +  SGTTL A LL G R+ V NVGDS                    SR+ S    +  L   PS   G+  + RR    +  +          R I  RLS DHKP+   E  RI AA G VF                                   +  D G   P RVW  D   PGLAMSRS+GD +AH+VGV+ EPE+ E  L++  D+ LV+A+DG+W+ ++  ++ ++
Sbjct:  118 VSAYAGKSQKGFAPYHRRKKNQDA--LIMAEEPHTSTLFFCVLDGHGEFGELVSGFFQREMARNLFAHDHFEQDPRRAVIEVVAALESALVQDRRIDTAF--SGTTLTAVLLRGDRVLVFNVGDSRVTVALHDAPNTADASVSSTSRESSMPMKKETLACTPSKARGLSFLSRRSLSLSAASNSPSPPTPPLRSI--RLSIDHKPDVAAEKARILAANGRVFA----------------------------------VRYDDGVDGPARVWLKDLDVPGLAMSRSLGDVVAHTVGVSSEPEVFEYTLDSARDVFLVLATDGLWEFMSDAEVVRM 411          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1082.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8E8_ECTSI5.650e-10550.55PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2BZE2_9CILI3.610e-2331.91PPM-type phosphatase domain-containing protein n=1... [more]
A0A2P6TSH7_CHLSO4.750e-2228.39Protein-serine/threonine phosphatase n=1 Tax=Chlor... [more]
A0A7J6QQW4_PEROL4.990e-2230.96PPM-type phosphatase domain-containing protein n=4... [more]
A0A835YZ58_9STRA6.460e-2244.44Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A1R2CT32_9CILI8.160e-2231.47PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2CLS4_9CILI3.120e-2030.47PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2CII2_9CILI6.750e-2026.92PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2ARX6_9CILI8.200e-2028.90PPM-type phosphatase domain-containing protein n=1... [more]
A0A4D9D7H3_9STRA1.780e-1929.04PPM-type phosphatase domain-containing protein n=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1082contigH-paniculata_contig1082:11686..13935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.2
Seed ortholog evalue5.4e-85
Seed eggNOG ortholog2880.D7G8E8
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-14_002780.1
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Exons5
Model size981
Cds size981
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1082.527.1prot_H-paniculata_contig1082.527.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1082 11686..13935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928786.3829916-CDS-H-paniculata_contig1082:11685..117571622928786.3829916-CDS-H-paniculata_contig1082:11685..11757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 11686..11757 +
1691480619.4775074-CDS-H-paniculata_contig1082:11685..117571691480619.4775074-CDS-H-paniculata_contig1082:11685..11757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 11686..11757 +
1622928786.3956106-CDS-H-paniculata_contig1082:12110..122041622928786.3956106-CDS-H-paniculata_contig1082:12110..12204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 12111..12204 +
1691480619.4866133-CDS-H-paniculata_contig1082:12110..122041691480619.4866133-CDS-H-paniculata_contig1082:12110..12204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 12111..12204 +
1622928786.760819-CDS-H-paniculata_contig1082:12426..125291622928786.760819-CDS-H-paniculata_contig1082:12426..12529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 12427..12529 +
1691480619.4966323-CDS-H-paniculata_contig1082:12426..125291691480619.4966323-CDS-H-paniculata_contig1082:12426..12529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 12427..12529 +
1622928786.7757614-CDS-H-paniculata_contig1082:12792..133691622928786.7757614-CDS-H-paniculata_contig1082:12792..13369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 12793..13369 +
1691480619.506514-CDS-H-paniculata_contig1082:12792..133691691480619.506514-CDS-H-paniculata_contig1082:12792..13369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 12793..13369 +
1622928786.9015338-CDS-H-paniculata_contig1082:13800..139351622928786.9015338-CDS-H-paniculata_contig1082:13800..13935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 13801..13935 +
1691480619.5172493-CDS-H-paniculata_contig1082:13800..139351691480619.5172493-CDS-H-paniculata_contig1082:13800..13935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1082 13801..13935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1082.527.1

>prot_H-paniculata_contig1082.527.1 ID=prot_H-paniculata_contig1082.527.1|Name=mRNA_H-paniculata_contig1082.527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=327bp
RLEGQWISAIKRRRVAMYSIPGEKAHDPAWRCQDAGMIVAPFDRQEDQAL
FAVFDGHGSNGRQAAKECMERLPKYLVPASYSTDPAAAFRRACHELQHDL
AVGGTTTEYYARSGTTLCAALLVGRRLTVANVGDSGCLRISRQPSPGAGR
SRLDVPSSDVGVEVVRRRFGGGTVETGVQVRGAVIGRLIVERLSRDHKPE
CDDELERIQAAGGVVFPLPNTSIGSGYMGRRAQAGSPGLRLGQVRACRNE
GIVRDFGAKVPRVWRADGRGPGLAMSRSIGDKMAHSVGVTHEPEIIEVDL
NATTDLMLVMASDGVWDVLTPEDIRKV
back to top

mRNA from alignment at H-paniculata_contig1082:11686..13935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1082.527.1 ID=mRNA_H-paniculata_contig1082.527.1|Name=mRNA_H-paniculata_contig1082.527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2250bp|location=Sequence derived from alignment at H-paniculata_contig1082:11686..13935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTAGAGGGCCAATGGATATCAGCAATCAAGAGGAGACGAGTGGCGAT GTACTCTATCCCCGGAGAAAAGGTTTGGCTTCTCTCCATGCTTCCTAATC ATCCACGGACTGTCCTCAATTGTCGAACATTCGATATAGCCGTTACTTCG TGTACTCTTGCGATATGCGACGAACGGCATCACTTCTGGTGATGATTACC GGGATGACCATTTCTTGGGTCGAAGGAGGAGCAATTGGAAGGATAGTTCG TCCCGCGACGGACGAGTGTATACGCTAGGGATTCCACCGCTGATCCCAGC TTAGTCACAATCTCTCCCAGTAGCCTCCGCCTGCGTCTCTCCTATAGGTT GAGATGATGCTACTTTGCTCCAAATGGATCACCTCACTCGTGACCATTGC CGTCCCCATCACAACATCCCCAAAGGCCCACGACCCTGCATGGAGGTGCC AGGATGCCGGCATGATTGTGGCGCCTTTTGATAGACAGGAGGACCAGGCT CTTTTCGCTGTGTTTGATGGTAAGACTTGATCGTACTGTGAGACCAAATG TATAGACGTTTCGTAGTGCTACCACGAATTGTACACGACCTGTGCGACAC TGTGCTGTGGTGTTTGGATATTGGCCGTTGTTGTTAGTGCGAGTTGGCGA CGGTGTTGCTATACGCGTGGTGATACTACTACCGTAAGTCCAAGAAGGAT CAATTTGAATGTTGGCATGAACATGCTCCTCACTCTGCAAGGTCATGGCT CAAATGGACGACAAGCGGCCAAAGAGTGCATGGAACGCCTCCCGAAGTAC CTCGTTCCTGCGTCTTACTCTACAGACCCCGCGGCAGCGTTCCGGTGAGA TTTCAGGTGCTAGATCTGAGAGCGGGTCGAAGTTTGAACTATCTGCTGCA CGTCGAATAGAGGCAACCTACGCAAGCAGCAGAAGATGTGATCATGAGCT CTTTTGTGGGGGTCGAATAGATATTTTGACGTTTGTCCTTCTAGACGGCT GAATATTCGTACTATGCTCTTTTAAGGCCGACTCCAGTGTTTCAACTCGC CATCGATGGCACAATCCATGCTCAATTATGAAATTCTCCCCATGGGTCAT AATGCAGACGTGCTTGTCACGAGCTACAACATGATCTCGCCGTGGGTGGT ACTACTACAGAGTACTACGCCCGCAGCGGCACAACTCTTTGCGCGGCTCT TCTGGTTGGTCGACGTCTTACCGTTGCTAACGTTGGGGACTCTGGTTGTC TGCGAATATCACGGCAACCCTCGCCGGGAGCAGGCAGGTCGCGGCTGGAC GTGCCAAGCAGCGATGTTGGGGTAGAGGTGGTACGAAGACGGTTCGGGGG GGGTACAGTAGAGACGGGGGTCCAAGTACGAGGGGCAGTGATCGGGCGTC TGATTGTCGAGCGACTTTCGAGAGATCATAAGCCGGAATGTGATGACGAG CTTGAAAGGATTCAAGCTGCTGGTGGTGTGGTATTCCCTCTGCCCAATAC GAGCATCGGCAGTGGCTACATGGGTAGAAGGGCTCAAGCGGGCTCTCCTG GGTTGAGACTTGGGCAAGTGAGGGCATGCCGTAATGAGGGGATTGTGAGA GATTTCGGGGCAAAGGTTCCGAGGGTGTGGAGGGCTGACGGCCGTGGCCC CGGACTGGCTATGAGCAGATCAATCGGCGACAAGGTACTGTGGTTACCTG CTTTCATGTTTGAGTTCCTTTTTCACTTGTGAATCTTTCACGTCTCAAAC TAAATGTTTTTCCGAGTTTTGAGTAATCTCGCCAGTGTCAGTCATCGTTA CCAACTTGTGTCTACCTAAAAAGACGTTTCGCCATGCATCATACTTGGAG CTGTGCTTAACGACACGCAAAATTTCAAGACTTCACGTATTGAAAGATTC TTGAGAGCTCTCTTGTATTGTTTCCGTATGCCCCATTTAGCAACGTCCAA CAGCATCAAATCTTTCATTTTAAAAGTTTCGCATCGCCCTCGACGCACAT CTACGCTTCCGACTAAGTTACACCAATGAGTTTTTTAATTTTGTGAAGAA ATTGCACTGAATGAAACATTTTGCGTTCGCTACGTACGCTCACCTCTTGT CAACTGTCAAAACAGATGGCTCATAGCGTCGGTGTTACGCATGAACCCGA GATTATTGAGGTGGACCTCAACGCCACTACAGATTTGATGCTTGTCATGG CATCCGACGGCGTTTGGGATGTTCTTACTCCCGAAGACATTCGCAAGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1082:11686..13935+

>mRNA_H-paniculata_contig1082.527.1 ID=mRNA_H-paniculata_contig1082.527.1|Name=mRNA_H-paniculata_contig1082.527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig1082:11686..13935+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTAGAGGGCCAATGGATATCAGCAATCAAGAGGAGACGAGTGGCGAT
GTACTCTATCCCCGGAGAAAAGAGATTAGAGGGCCAATGGATATCAGCAA
TCAAGAGGAGACGAGTGGCGATGTACTCTATCCCCGGAGAAAAGGCCCAC
GACCCTGCATGGAGGTGCCAGGATGCCGGCATGATTGTGGCGCCTTTTGA
TAGACAGGAGGACCAGGCTCTTTTCGCTGTGTTTGATGGCCCACGACCCT
GCATGGAGGTGCCAGGATGCCGGCATGATTGTGGCGCCTTTTGATAGACA
GGAGGACCAGGCTCTTTTCGCTGTGTTTGATGGTCATGGCTCAAATGGAC
GACAAGCGGCCAAAGAGTGCATGGAACGCCTCCCGAAGTACCTCGTTCCT
GCGTCTTACTCTACAGACCCCGCGGCAGCGTTCCGGTCATGGCTCAAATG
GACGACAAGCGGCCAAAGAGTGCATGGAACGCCTCCCGAAGTACCTCGTT
CCTGCGTCTTACTCTACAGACCCCGCGGCAGCGTTCCGACGTGCTTGTCA
CGAGCTACAACATGATCTCGCCGTGGGTGGTACTACTACAGAGTACTACG
CCCGCAGCGGCACAACTCTTTGCGCGGCTCTTCTGGTTGGTCGACGTCTT
ACCGTTGCTAACGTTGGGGACTCTGGTTGTCTGCGAATATCACGGCAACC
CTCGCCGGGAGCAGGCAGGTCGCGGCTGGACGTGCCAAGCAGCGATGTTG
GGGTAGAGGTGGTACGAAGACGGTTCGGGGGGGGTACAGTAGAGACGGGG
GTCCAAGTACGAGGGGCAGTGATCGGGCGTCTGATTGTCGAGCGACTTTC
GAGAGATCATAAGCCGGAATGTGATGACGAGCTTGAAAGGATTCAAGCTG
CTGGTGGTGTGGTATTCCCTCTGCCCAATACGAGCATCGGCAGTGGCTAC
ATGGGTAGAAGGGCTCAAGCGGGCTCTCCTGGGTTGAGACTTGGGCAAGT
GAGGGCATGCCGTAATGAGGGGATTGTGAGAGATTTCGGGGCAAAGGTTC
CGAGGGTGTGGAGGGCTGACGGCCGTGGCCCCGGACTGGCTATGAGCAGA
TCAATCGGCGACAAGACGTGCTTGTCACGAGCTACAACATGATCTCGCCG
TGGGTGGTACTACTACAGAGTACTACGCCCGCAGCGGCACAACTCTTTGC
GCGGCTCTTCTGGTTGGTCGACGTCTTACCGTTGCTAACGTTGGGGACTC
TGGTTGTCTGCGAATATCACGGCAACCCTCGCCGGGAGCAGGCAGGTCGC
GGCTGGACGTGCCAAGCAGCGATGTTGGGGTAGAGGTGGTACGAAGACGG
TTCGGGGGGGGTACAGTAGAGACGGGGGTCCAAGTACGAGGGGCAGTGAT
CGGGCGTCTGATTGTCGAGCGACTTTCGAGAGATCATAAGCCGGAATGTG
ATGACGAGCTTGAAAGGATTCAAGCTGCTGGTGGTGTGGTATTCCCTCTG
CCCAATACGAGCATCGGCAGTGGCTACATGGGTAGAAGGGCTCAAGCGGG
CTCTCCTGGGTTGAGACTTGGGCAAGTGAGGGCATGCCGTAATGAGGGGA
TTGTGAGAGATTTCGGGGCAAAGGTTCCGAGGGTGTGGAGGGCTGACGGC
CGTGGCCCCGGACTGGCTATGAGCAGATCAATCGGCGACAAGATGGCTCA
TAGCGTCGGTGTTACGCATGAACCCGAGATTATTGAGGTGGACCTCAACG
CCACTACAGATTTGATGCTTGTCATGGCATCCGACGGCGTTTGGGATGTT
CTTACTCCCGAAGACATTCGCAAGGTGATGGCTCATAGCGTCGGTGTTAC
GCATGAACCCGAGATTATTGAGGTGGACCTCAACGCCACTACAGATTTGA
TGCTTGTCATGGCATCCGACGGCGTTTGGGATGTTCTTACTCCCGAAGAC
ATTCGCAAGGTG
back to top