mRNA_H-paniculata_contig20353.5270.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20353.5270.1
Unique NamemRNA_H-paniculata_contig20353.5270.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20353.5270.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.710e-29
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 LPDLINGNCEHNTYMCCWTENDGQGMQDNTDVCNTT--ANNGRVRDFAGNAEGDVHCHGFVWQDDSHLESFIIPLFNYVKKFDHVEERGYYG 270
            +PD   G+C HNTYMCCWTENDG+GM DNTDVC      + G   +F G++EG+VHCHGFVW +D+  + +I  L  +V+ FDH + RGYYG
Sbjct:  314 VPDYDYGSCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDA-TDKYIHLLSQFVQNFDHRDRRGYYG 404
[Close]
BLAST of mRNA_H-paniculata_contig20353.5270.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.590e-26
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 LPDLINGNCEHNTYMCCWTENDGQGMQDNTDVCNTT--ANNGRVRDFAGNAEGDVHCHGFVWQDDSHLESFIIPLFNYVKKFDHVEERGYYG 270
            +PD     C HNTYMCCWTENDGQGM DNTDVC      + G   ++ G +EG+VHCHGFVW +D+  + +I  L  +V+ FDH + RGY+G
Sbjct:  328 VPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDA-TDKYIHLLAQFVQHFDHRDRRGYFG 418
[Close]
BLAST of mRNA_H-paniculata_contig20353.5270.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 2.940e-26
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 LPDLINGNCEHNTYMCCWTENDGQGMQDNTDVCNTT--ANNGRVRDFAGNAEGDVHCHGFVWQDDSHLESFIIPLFNYVKKFDHVEERGYYG 270
            +PD     C HNTYMCCWTENDGQGM DNTDVC      + G   ++ G +EG+VHCHGFVW +D+  + +I  L  +V+ FDH + RGY+G
Sbjct:  285 VPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDA-TDKYIHLLAQFVQHFDHRDRRGYFG 375
[Close]
BLAST of mRNA_H-paniculata_contig20353.5270.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.620e-19
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 LPDLINGNCEHNTYMCCWTEND-GQGMQDNTDVCNTTANNGRVRDFAGNAEGDVHCHGFVWQDDSHLESFIIPLFNYVKKFDHVEERG-YYG 270
            +  L++G CE +TYMCC+T +D G+G+  NTDVC+  +      +  G++EG V+CHGF W + + + + I+PL++YVK     EE G YYG
Sbjct:   30 VAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEG---LEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYG 118
[Close]
BLAST of mRNA_H-paniculata_contig20353.5270.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.710e-18
Identity = 43/93 (46.24%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 LPDLINGNCEHNTYMCCWTENDG-QGMQDNTDVCNTT--ANNGRVRDFAGNAEGDVHCHGFVWQDDSHLESFIIPLFNYVKKFDHVEERGYYG 270
            LP++    CE NTYMCCWT NDG  GM  NTDVC        G   +F  ++EG V+CHGF W D + + + I+PL++ V      EE GYYG
Sbjct:  108 LPEM----CEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYG 196
[Close]
BLAST of mRNA_H-paniculata_contig20353.5270.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.580e-12
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 LPDLINGNCEHNTYMCCWTENDGQGMQDNTDVCNTT--ANNGRVRDFAGNAEGDV 159
            +PD     C HNTYMCCWTENDGQGM DNTDVC      + G   ++ G +EG+V
Sbjct:  164 VPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGGSEGEV 218
[Close]
BLAST of mRNA_H-paniculata_contig20353.5270.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.560e-7
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:    1 LPDLINGNCEHNTYMCCWTENDGQGMQDNT 90
            +PD  +G+C HNTYMCC TENDGQGM +NT
Sbjct:  201 IPDYDHGSCSHNTYMCCLTENDGQGMAENT 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20353.5270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FT55_ECTSI7.710e-2954.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI1.590e-2652.17Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI2.940e-2652.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT53_ECTSI1.620e-1942.39Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
D7FT54_ECTSI3.710e-1846.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT81_9PHAE5.580e-1254.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L319_9PHAE8.560e-770.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20353contigH-paniculata_contig20353:461..730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue6.2e-23
Seed eggNOG ortholog2880.D7FT55
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.7338486-CDS-H-paniculata_contig20353:460..7301622929528.7338486-CDS-H-paniculata_contig20353:460..730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20353 461..730 -
1691480899.9375658-CDS-H-paniculata_contig20353:460..7301691480899.9375658-CDS-H-paniculata_contig20353:460..730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20353 461..730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20353.5270.1prot_H-paniculata_contig20353.5270.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20353 461..730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20353.5270.1

>prot_H-paniculata_contig20353.5270.1 ID=prot_H-paniculata_contig20353.5270.1|Name=mRNA_H-paniculata_contig20353.5270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
LPDLINGNCEHNTYMCCWTENDGQGMQDNTDVCNTTANNGRVRDFAGNAE
GDVHCHGFVWQDDSHLESFIIPLFNYVKKFDHVEERGYYG
back to top

mRNA from alignment at H-paniculata_contig20353:461..730-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20353.5270.1 ID=mRNA_H-paniculata_contig20353.5270.1|Name=mRNA_H-paniculata_contig20353.5270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at H-paniculata_contig20353:461..730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCAGATCTTATCAACGGAAACTGCGAGCACAACACCTACATGTGTTG
TTGGACCGAGAACGACGGCCAAGGGATGCAGGACAACACTGACGTTTGCA
ACACAACAGCCAACAACGGAAGAGTTCGCGATTTCGCGGGCAACGCCGAG
GGCGACGTCCATTGCCACGGCTTCGTTTGGCAGGATGATTCCCACTTGGA
GTCCTTCATTATTCCCCTCTTCAACTACGTGAAAAAGTTCGACCACGTTG
AGGAGAGGGGGTACTACGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20353:461..730-

>mRNA_H-paniculata_contig20353.5270.1 ID=mRNA_H-paniculata_contig20353.5270.1|Name=mRNA_H-paniculata_contig20353.5270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig20353:461..730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCAGATCTTATCAACGGAAACTGCGAGCACAACACCTACATGTGTTG
TTGGACCGAGAACGACGGCCAAGGGATGCAGGACAACACTGACGTTTGCA
ACACAACAGCCAACAACGGAAGAGTTCGCGATTTCGCGGGCAACGCCGAG
GGCGACGTCCATTGCCACGGCTTCGTTTGGCAGGATGATTCCCACTTGGA
GTCCTTCATTATTCCCCTCTTCAACTACGTGAAAAAGTTCGACCACGTTG
AGGAGAGGGGGTACTACGGCCTCCCAGATCTTATCAACGGAAACTGCGAG
CACAACACCTACATGTGTTGTTGGACCGAGAACGACGGCCAAGGGATGCA
GGACAACACTGACGTTTGCAACACAACAGCCAACAACGGAAGAGTTCGCG
ATTTCGCGGGCAACGCCGAGGGCGACGTCCATTGCCACGGCTTCGTTTGG
CAGGATGATTCCCACTTGGAGTCCTTCATTATTCCCCTCTTCAACTACGT
GAAAAAGTTCGACCACGTTGAGGAGAGGGGGTACTACGGC
back to top