mRNA_H-paniculata_contig20346.5268.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20346.5268.1
Unique NamemRNA_H-paniculata_contig20346.5268.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 1.080e-130
Identity = 192/230 (83.48%), Postives = 210/230 (91.30%), Query Frame = 1
Query:   16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPS-TSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ 702
            PP +  VF+V+DLSMKFERHLDCEAVDFMPLA+GYEKLAFLLADRTLAFHAGYGKHHSVRIP+FGRSLAY RETCDM+VGCG GE+HRFNLDQGRFRT + LPS +S S GNP+AGINKIEL  AHQLL A TDDGFVHLWD+RQGQSGGGR VASLDLR++V A AV AAEQT+GGFQVS+VAFD DGLTMGVGTSSAHCLTFDLRS+RPTFVKEHQYGLP+T +KFHQ
Sbjct:   76 PPQI-KVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAFHAGYGKHHSVRIPRFGRSLAYQRETCDMMVGCGDGEIHRFNLDQGRFRTAMTLPSGSSSSQGNPTAGINKIELCVAHQLLAAGTDDGFVHLWDSRQGQSGGGRAVASLDLRDSVDAAAVTAAEQTLGGFQVSSVAFDTDGLTMGVGTSSAHCLTFDLRSSRPTFVKEHQYGLPITGIKFHQ 304          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.050e-66
Identity = 122/228 (53.51%), Postives = 152/228 (66.67%), Query Frame = 1
Query:   16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
            PP V  V++V++LSMKFERHLD E V    L+ G+EKL FL ADRTLAFHA YG HH+VRIP+FGR LAY +  CD++VG  G E++R NLD+GR+R P+ LP   G+        NK+ L+  HQLL A TDDG+VH++D R G  G    VASL L      T            +V+A+AF  DGLT+GVGTS+A CL +DLRS+ P   K+HQYGLPVT VKFH
Sbjct:   93 PPQV-KVYEVAELSMKFERHLDAECVAMEVLSAGFEKLVFLQADRTLAFHAAYGMHHAVRIPRFGRDLAYQQAACDLIVGGAGPELYRLNLDEGRYRAPLTLPGDGGT--------NKLALSSVHQLLGAGTDDGWVHMFDTRAGGRGKA-PVASLHLGGGGAET------------EVTALAFAPDGLTLGVGTSAAQCLLYDLRSSDPLLTKDHQYGLPVTDVKFH 298          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A8K1FME9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FME9_PYTOL)

HSP 1 Score: 204 bits (518), Expect = 9.730e-58
Identity = 107/228 (46.93%), Postives = 140/228 (61.40%), Query Frame = 1
Query:   19 PAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLD-LREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
            P +  VFDV +LS+KFER LD E V F  L+  + KLAFL ADRTLAFHA YG H+++RIP+FGR + YHRE CD+ +     EV+R NLDQGRF  P+ + S++          N ++L   HQLL    +DG V  WD R       R V  LD +   VGA  +        G +++++ FD DGLT GVGTS+ HCL +DLRS++P   K HQYGLP+  +KFH
Sbjct:   76 PPIVKVFDVRELSLKFERRLDSEVVQFEILSPDFGKLAFLQADRTLAFHAPYGSHYNLRIPKFGRDMCYHRENCDIYIAASASEVYRVNLDQGRFLAPLEIGSSAA---------NVVKLNPIHQLLGVGCEDGMVECWDTRSQ-----RRVGLLDSIPSLVGARDLEK------GVEITSLEFDDDGLTFGVGTSNGHCLLYDLRSSKPLLQKTHQYGLPILDIKFH 283          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.060e-57
Identity = 111/228 (48.68%), Postives = 146/228 (64.04%), Query Frame = 1
Query:   16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
            PP+V  VFDV DLS+KFER LD E V F  LA  + KLAFL ADR++AFHA YG H+++RIP+FGR + YHRE C++ V   G +V+R NLDQGRF  P+ L S S +        N I+L   HQL+    +DG V ++D+R  Q      V SLD+  A   T+    +Q     +V+A+ FD DGLT GVGTS   CL +DLRS+RP   K+HQYGLP+ +++FH
Sbjct:   78 PPSV-KVFDVRDLSLKFERGLDAEVVQFEVLAADFGKLAFLQADRSVAFHAPYGTHYNMRIPKFGRDMTYHRENCEIYVAASGSDVYRINLDQGRFVAPLELQSQSSAA-------NVIQLNPVHQLIGVGCEDGVVEMFDSRSQQR-----VGSLDV--AAQCTSAKPTKQV----EVTALRFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKDHQYGLPIVNLQFH 286          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A4D9D2Q4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Q4_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.650e-57
Identity = 107/229 (46.72%), Postives = 145/229 (63.32%), Query Frame = 1
Query:   16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ 702
            PPAV  V+++ ++S+KFER L  E VDF+ L++   KL FL  DRTL+FHA YG H+S+RIP FGR+L YH  +CD+ +     E++R NL++GRFR P+   S  G        +N + L   H LL A   DG V ++D R  ++     ++SLD+  AV A A         G  VSA+ FD DGLTM VGTS+ HCL +DLRS+RP  +KEHQYGLP+ ++KFHQ
Sbjct:   76 PPAV-RVYELQEMSLKFERRLTAEVVDFLILSEDVGKLCFLQNDRTLSFHAPYGTHYSLRIPTFGRALTYHPPSCDLYIAAAASELYRLNLEEGRFRAPVPCSSPGG--------VNVLALNPVHFLLGAGGVDGRVEMFDPRSREA-----LSSLDVAGAV-AEAGRWGGGPEEGMAVSALEFDRDGLTMAVGTSAGHCLLYDLRSSRPRALKEHQYGLPIVALKFHQ 289          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A662WTJ8_9STRA (NUC153 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTJ8_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.360e-57
Identity = 110/228 (48.25%), Postives = 144/228 (63.16%), Query Frame = 1
Query:   16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
            PP+V  VFDV DLS+KFER LD E V    L+  + KLAFL +DR++AFHA YG H+++RIP+FGR + YHRE C++ VG  G +V+R NLDQGRF  P+ L S   +        N ++L   HQLL    DDG V ++D+R  Q      V SLD    VGA   ++A       +V+A+ FD DGLT GVGTS   CL +DLRS+RP   K HQYGLP+ +++FH
Sbjct:   78 PPSV-KVFDVRDLSLKFERRLDAEVVQLEVLSSDFGKLAFLQSDRSVAFHAPYGTHYAMRIPKFGRDMCYHRENCELYVGASGADVYRLNLDQGRFLAPLELRSAYSAA-------NVVQLNPIHQLLGVGCDDGVVEMFDSRSQQR-----VGSLD----VGAHFSSSAGADASPVEVTALQFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKTHQYGLPIINLQFH 288          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: M4BWD3_HYAAE (NUC153 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWD3_HYAAE)

HSP 1 Score: 202 bits (514), Expect = 4.080e-57
Identity = 107/227 (47.14%), Postives = 142/227 (62.56%), Query Frame = 1
Query:   19 PAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
            P +  VFDV DLS+KFER LD E V F  L+  + KLAFL ADR++ FHA YG H+S+RIP+FGR + YHRE C++ V   G EV+R NLDQGRF +P+ L S S +        N ++L   HQLL    +DG V ++D+R  Q  G   VA+   R        + A++ V   +++A+ FD DGLT GVGTS   CL +DLRS RP   K HQYGLP+ +++FH
Sbjct:   78 PPLVKVFDVRDLSLKFERGLDAEVVQFEVLSSDFGKLAFLQADRSVTFHAPYGAHYSLRIPKFGRDMTYHRENCELYVAASGSEVYRINLDQGRFVSPLELQSQSSAA-------NVVQLNPIHQLLGVGCEDGVVEMFDSRSQQRVGSLDVAAQCAR--------SKADKQV---EITALRFDDDGLTFGVGTSEGQCLLYDLRSTRPLLEKSHQYGLPIVNLQFH 286          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: W7TBN4_9STRA (Nucleolar protein 10 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBN4_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.480e-57
Identity = 109/229 (47.60%), Postives = 147/229 (64.19%), Query Frame = 1
Query:   16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ 702
            PPAV  V+++ ++S+KFER L  E VDF+ L++   KL FL  DRTL+FHA YG H+S+RIP FGR+L YH  +CD+ +     E++R NL++GRFR P+   S  G        +N + L   H LL A  +DG V ++D R  ++     ++SLD+  AV A A        GG  VSAV FD DGLTM VGTS+ HCL +DLRS+RP  +KEHQYGLP+ ++KFHQ
Sbjct:   76 PPAV-RVYELQEMSLKFERRLTAEVVDFLILSEDVGKLCFLQNDRTLSFHAPYGTHYSLRIPTFGRALTYHPPSCDLYIAAAASELYRLNLEEGRFRAPVPCSSPGG--------VNVLALNPVHFLLGAGGEDGRVEMFDPRSREA-----LSSLDVAGAV-AEAGRWGGGPEGGMAVSAVEFDRDGLTMAVGTSAGHCLLYDLRSSRPLALKEHQYGLPIVALKFHQ 289          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: F0W0F6_9STRA (Nucleolar protein 10 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0F6_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.170e-56
Identity = 109/230 (47.39%), Postives = 143/230 (62.17%), Query Frame = 1
Query:   16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDAR-QGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ 702
            PP+V  V+DV DLSMKFER LD E V F  L+    KL FL  DRTL FHA YGKH+S+RIP FGR LAYHR+ CD+ +   G EV+R NLDQG+F +P+++ S+         G N IEL   HQL+    +DG +  WD+R Q   G     +SL  +  V +   N      G  Q++++A+  DGLT  VGTSS HC+ +DLRS++P  +K HQYGL +  VKFH+
Sbjct:   76 PPSV-KVYDVRDLSMKFERRLDAEVVQFEILSHDIGKLCFLQTDRTLTFHAAYGKHYSLRIPTFGRDLAYHRQHCDLYIAASGSEVYRVNLDQGQFLSPLSILSS---------GANVIELNPVHQLVGVGCEDGTIECWDSRIQKHVGRLDVFSSLSAKHFVSS---NTESNHQG--QITSLAYHDDGLTFAVGTSSGHCMLYDLRSSKPLLIKSHQYGLGILDVKFHE 290          
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: H3GLA6_PHYRM (NUC153 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLA6_PHYRM)

HSP 1 Score: 201 bits (510), Expect = 1.470e-56
Identity = 106/227 (46.70%), Postives = 139/227 (61.23%), Query Frame = 1
Query:   19 PAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
            P +  VFDV DLS+KFER LD E V F  L+  + KLAFL ADR++AFHA YG H+++RIP+FGR + YHRE C++ V   G +V+R NLDQGRF  P+ L S + +        N +++   HQLL    DDG V ++D R  Q      V SLD+       A   A  +    +V+A+ FD DGLT GVGTS   CL +DLRS+RP   K HQYGLP+  ++FH
Sbjct:   78 PPLVKVFDVRDLSLKFERGLDAEVVQFEVLSADFGKLAFLQADRSVAFHAPYGSHYNMRIPKFGRDMCYHRENCELYVAASGSDVYRLNLDQGRFGAPLELQSQASAA-------NVVKMNPIHQLLGVGCDDGIVEMFDTRSQQR-----VGSLDV-------AAYCASSSDKQLEVTALRFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKNHQYGLPIVDLQFH 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI1.080e-13083.48NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA1.050e-6653.51WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A8K1FME9_PYTOL9.730e-5846.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VIN9_9STRA1.060e-5748.68NUC153 domain-containing protein n=2 Tax=Peronospo... [more]
A0A4D9D2Q4_9STRA1.650e-5746.72Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A662WTJ8_9STRA2.360e-5748.25NUC153 domain-containing protein n=2 Tax=Nothophyt... [more]
M4BWD3_HYAAE4.080e-5747.14NUC153 domain-containing protein n=1 Tax=Hyalopero... [more]
W7TBN4_9STRA4.480e-5747.60Nucleolar protein 10 n=1 Tax=Nannochloropsis gadit... [more]
F0W0F6_9STRA1.170e-5647.39Nucleolar protein 10 putative n=1 Tax=Albugo laiba... [more]
H3GLA6_PHYRM1.470e-5646.70NUC153 domain-containing protein n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20346contigH-paniculata_contig20346:302..4508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score393.3
Seed ortholog evalue8.1e-107
Seed eggNOG ortholog2880.D7G3M9
Preferred nameNOL10
KEGG koko:K14788
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG2321@1,KOG2321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons4
Model size702
Cds size702
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20346.5268.1prot_H-paniculata_contig20346.5268.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20346 302..4508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.5719142-CDS-H-paniculata_contig20346:301..4541622929528.5719142-CDS-H-paniculata_contig20346:301..454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20346 302..454 -
1691480899.8699236-CDS-H-paniculata_contig20346:301..4541691480899.8699236-CDS-H-paniculata_contig20346:301..454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20346 302..454 -
1622929528.5865347-CDS-H-paniculata_contig20346:1094..12991622929528.5865347-CDS-H-paniculata_contig20346:1094..1299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20346 1095..1299 -
1691480899.8863652-CDS-H-paniculata_contig20346:1094..12991691480899.8863652-CDS-H-paniculata_contig20346:1094..1299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20346 1095..1299 -
1622929528.5992205-CDS-H-paniculata_contig20346:1789..18951622929528.5992205-CDS-H-paniculata_contig20346:1789..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20346 1790..1895 -
1691480899.8955302-CDS-H-paniculata_contig20346:1789..18951691480899.8955302-CDS-H-paniculata_contig20346:1789..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20346 1790..1895 -
1622929528.614235-CDS-H-paniculata_contig20346:4270..45081622929528.614235-CDS-H-paniculata_contig20346:4270..4508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20346 4271..4508 -
1691480899.9049842-CDS-H-paniculata_contig20346:4270..45081691480899.9049842-CDS-H-paniculata_contig20346:4270..4508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20346 4271..4508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20346.5268.1

>prot_H-paniculata_contig20346.5268.1 ID=prot_H-paniculata_contig20346.5268.1|Name=mRNA_H-paniculata_contig20346.5268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MYHSLPPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADR
TLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGR
FRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQG
QSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGT
SSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ
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mRNA from alignment at H-paniculata_contig20346:302..4508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20346.5268.1 ID=mRNA_H-paniculata_contig20346.5268.1|Name=mRNA_H-paniculata_contig20346.5268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4207bp|location=Sequence derived from alignment at H-paniculata_contig20346:302..4508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATCACTCCTTGCCTCCTGCTGTCTGTACAGTTTTTGACGTTTCGGA CTTGTCTATGAAGTTCGAAAGGCACCTAGATTGCGAAGCGGTGGATTTCA TGCCGCTTGCCGATGGTTACGAAAAGCTGGCGTTCCTATTGGCGGATCGG ACGCTGGCGTTCCACGCCGGGTACGGCAAGCACCACTCCGTCAGGATACC ACAGTTTGGGAGGTCTTTGGCCTATCACCGAGAGACTTGTAAGCGAGTGA GGGAGGGAGGGAGGGAGGGAGTTAGTGAAGGAGTGTTTGACTGAATTTTC GAATGACTGACTAACTGACTGACTGACTGACTGGCGGCAGGTGATGATGG CGTGGCGGTAGCGTGGCTCGCGCGAGTCTTTTTTTTCTTTTTTTTTCTTG TCAACCCTTTTGGTTGGAATTGATCACTTACGAATTTTGATCCCGTGTAA TACTTATAAATGGGATTTCTTATTGTTGACCGCTGTTGTAGCGTGGCTAG CGCGGTGCATGGTCATGTCATGTCATTCATTTGTGATTCTTGTCTAGTGT TGATAGACATTTACGCCCTCGGATAGATACGAGTACTTGGGAGAGCGTTC TTGTCGCCGAAAATTGCAGAAGGGAATTGGCCTCAAGGTTCAGAGTCTTG TGTTGACCTCCCTGTTCGTTTTTGATATGATTCCAAGCAGTCCCATTGTA GTAGATGGTCCTTCCGGGGCACATGGAATAATAAACGATAAAACCTATGT GTTGGATTAATACATGTAATTATATGTGTGTGTGTGTGTGTGTGTGTGTG TGAAAAATGACTAACTGTACTCGAAGGACGTTGGGTTATTATTGCCTCCT TTTAAGGCGTTTCTACGGTGGCCACCACACACACACACACACACACACAC ATATATATATATGATGTATTGTATGGCCTTTCACAGTGTAAAACGTACGA TTAAAGTGAGTGTGTTGAATAAATGGTGATGTTGTGCTTATGGTTAAGGG TGGTCGCAACGTTTGTCGTGTTTCTGTCTACTTGTTTGAAAATAAACGTT TATATATGTGTTCTTGTCCACTTTCTAGTGATTGAGGTATGTTGTTTTTC TTTCTCAACCATGGAGATTGTGTCGAAAAATAATATCTCAGGAAGTTGAA ATATCGGAAAGGAGCGTTCGGGGCAAAAATTGCACTTCATTTATTTAGGG TGATACATTACATATTCGAAAATCGATCAGAATTACCAGGTTTGTTTGTT TTTTCGTGACGATAGACTCGGTACACTGCAAGTATGATACCCCCCCCCCC CCCTAAATTCGCTACGCTCCTCTAAGTTTGTTGCGTTTTTAGACAATGAC CAAATAATTCAACAACTTCAACATGGTGGATATACCTCCTTCTTAGTGAC GTGGTCATTTGCGAAACCTATGGATTGAATTTTGCTGATGAGTGTGTAAA ATATCGCGGATTGAAGTCAGCGGCACAGTCCCTGACATGAGTACAATGAA TTTTATGATATTAACGTTAGAGTTATAGTTTAAGTGACTGTGGCAGGGTA ATTTGATAGCAATAATGAGAATAAAATTTAGATAGAAAATGTATTTAATT TGTTCATGATGTAGCAAGTTTGTTTCAATGTTTATGGTGTAAGTCTTTTT TATCGTATGAGGTCTATTTCATGTTTTTACCTACAATACATACAGTACAC ATGCAAGTGATACAGTCATGTTTGTCCTGTGAAGGTTGCTGTAGTCCATG TCGTGGGTGGTACAAGAAGCGGGAGAAGTTCCGGGACCGGGTCATGATGG GTAGGGCAGAATTTTGGCCATCTCGTGTGAGCAGCATACCGTTGATTTAT TCAAGCTGCCTATGCAAATATTCTTCATGTTTATTCAGAAATCCATTTCA CCTGCTGAGCATGCGTGGGTGGAACTAGATGAGCTGAAGACATGAGGATA AAGAAGTAAGCACTTAGTCATGCACAACTCGTTCAGCGTCATGTACTCCA AGTCTCGTGATGGGGGTAGCCAGAGGAGTAAATAACTCTGTTCTGTTCAA GGAAATGTAGAAATACTTGGGTAGAAATACTAAAGTATGGAAGCATCGGA TAAAGGTTTTTGCCTTAGCCTTTCGGGGGTTACAAAAAAACAACAAAGGG GGAGTTAGCCAGTCCCCGGGCTATAGCTAGCACTCCCAAGTCTGAGTACA ATGTGCTTAAAGTGAGTATGTACATTGAACTCCTGTGCCTCCTCTCTGTT TAGTGTCCAACAATCGACCTCCCTCCATCCTTCCCATCTTCGCATAGTGT ACTTGAAGATCCCACAGTGGGGTGCGCTAGGGCCCAGGCAGGCTGTGGAC TTGCACTGTACAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT TTCCTATTTGCTGTCCTATCTGTCATTGCATGCTTCGATGGTTGTCCCGT CAGTGGAGCTTTTCGGCTATTGTTCCTATTGGTCGTATCAAATATACATG AGGGTATAATGAGGAACTACTTGACATTTGGAAAGTACGACACACCCCCT CCGCTTCATCTACACCCCGTACCTCGTACGTCATTCGTAACGGCCTCTTG TCCTCTGAGGCAGGCGACATGCTGGTGGGCTGTGGTGGGGGAGAAGTTCA TCGGTTCAACTTGGATCAAGGCAGGTTTCGAACGCCTATTGCGCTACCGT CCACTTCTGGTTCCCTCGGGTTAGTTTGCATTATTATGCTTGTGAACCAA AATGTGACTCGTTTTTAGGTACGGCGTACCCGAACGGTCCTTTTTTGTGC GGTCCACATGCTATCGTCATCGGATATTTTTCTGACTCCATGTTGTTGCT CGAAAAACGGGATTTAAGTAAGGTATAGTACACGGAATATTAACCCCTAG CGTATGATGCCTTTTAGATGGTGATTTATCATCTGGGATCTATGCTGCAG GGGAGCAACAGTGTGGTGGTTTTAAGTATAGCTCTAGTTGTGTTGTAAAG TGGTGTGGTGTATAAGATCACGGGGCAAGGGTAAGATTAATTGTGTTCAA ACCCTGGATATGAACCGTTGCATAGGAGTTTCATGTGATAGCTGGATAAT GACAAATTGATATAATGAGCTTGAAAAAAAAAGCAGTTTATTCGCTCGCT CGCTCCCTCCCTCCCTCCCTCATTTCACACACAAAACACGCACGGGGGTG GCCTAACAGGAATCCATCGGCGGGCATCAACAAGATCGAGCTAGCGCAAG CGCACCAGCTGCTCGTGGCCGCAACAGACGATGGGTTTGTGCACCTGTGG GACGCTCGGCAGGGACAGTCAGGCGGGGGTCGAACCGTTGCCTCTCTTGA CCTGAGGGAAGCCGTGGGGGCTACTGCGGTCAATGCTGCTGAGCAAACTG TGGGGGGATTCCAGGTGAGAGAGAGGCATTTTGGTTGGGAGGCAGGGAGT ATGAAAAGTATAGTGTATTTAATGCTGAGGCTGTTTAGGCCCATAATAAC GGCTAAATGTAGTCATTATTCATGAACAACTTTCAACCCTAATGGGAGAT GACGTACGTAAGCTCGACAAAACATCCCCGATATAACTATCAGAAAATTC TTTGCGCTGGTCTTCTGAGGGGGAAAAAAAAGAAGGAAAATAGTATGACA GTATTATCTCATATCTTCACAGCACGAAGAGATGGTATGACAACGGGTAA ATTGAAGGCTAAATACTGGTAGCTTCGGATAGTACATTTTATACAGGAGA AGCTAGTATACCGTTGTATCGGTAATTGGCGAACGAAGCTAGCGGACAGC GCTTTAGCGAGAACCAAACGACCTCCCCTGGCTGGTGAAGGGGCCTTGGT TGGAACGGCGACGCGGAGGCAGAACAAACACGCATTTTGGCTTCATCTAT CTTGAAAAACGAGTGCCGAAGCATCACGGCGTGACGGCAAGACTGACTGT CAATCAATCTAAAAGCAATGTAAATAATTGGCAGCGAAAAGGTCCGGTTT CGCAGTCAGAGCTTGTGCTTTGATGTGACCGGTTATGCTGCGATGACGTC TCAGGTCTCCGCGGTGGCGTTCGACGCGGACGGCCTGACCATGGGTGTTG GTACCAGCTCGGCGCACTGCTTGACGTTCGATCTGCGCTCAGCCCGGCCT ACATTTGTGAAAGAGCACCAGTATGGGCTTCCGGTCACTAGCGTCAAGTT CCACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20346:302..4508-

>mRNA_H-paniculata_contig20346.5268.1 ID=mRNA_H-paniculata_contig20346.5268.1|Name=mRNA_H-paniculata_contig20346.5268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig20346:302..4508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATCACTCCTTGCCTCCTGCTGTCTGTACAGTTTTTGACGTTTCGGA
CTTGTCTATGAAGTTCGAAAGGCACCTAGATTGCGAAGCGGTGGATTTCA
TGCCGCTTGCCGATGGTTACGAAAAGCTGGCGTTCCTATTGGCGGATCGG
ACGCTGGCGTTCCACGCCGGGTACGGCAAGCACCACTCCGTCAGGATACC
ACAGTTTGGGAGGTCTTTGGCCTATCACCGAGAGACTTATGTATCACTCC
TTGCCTCCTGCTGTCTGTACAGTTTTTGACGTTTCGGACTTGTCTATGAA
GTTCGAAAGGCACCTAGATTGCGAAGCGGTGGATTTCATGCCGCTTGCCG
ATGGTTACGAAAAGCTGGCGTTCCTATTGGCGGATCGGACGCTGGCGTTC
CACGCCGGGTACGGCAAGCACCACTCCGTCAGGATACCACAGTTTGGGAG
GTCTTTGGCCTATCACCGAGAGACTTGCGACATGCTGGTGGGCTGTGGTG
GGGGAGAAGTTCATCGGTTCAACTTGGATCAAGGCAGGTTTCGAACGCCT
ATTGCGCTACCGTCCACTTCTGGTTCCCTCGGGCGACATGCTGGTGGGCT
GTGGTGGGGGAGAAGTTCATCGGTTCAACTTGGATCAAGGCAGGTTTCGA
ACGCCTATTGCGCTACCGTCCACTTCTGGTTCCCTCGGGAATCCATCGGC
GGGCATCAACAAGATCGAGCTAGCGCAAGCGCACCAGCTGCTCGTGGCCG
CAACAGACGATGGGTTTGTGCACCTGTGGGACGCTCGGCAGGGACAGTCA
GGCGGGGGTCGAACCGTTGCCTCTCTTGACCTGAGGGAAGCCGTGGGGGC
TACTGCGGTCAATGCTGCTGAGCAAACTGTGGGGGGATTCCAGGAATCCA
TCGGCGGGCATCAACAAGATCGAGCTAGCGCAAGCGCACCAGCTGCTCGT
GGCCGCAACAGACGATGGGTTTGTGCACCTGTGGGACGCTCGGCAGGGAC
AGTCAGGCGGGGGTCGAACCGTTGCCTCTCTTGACCTGAGGGAAGCCGTG
GGGGCTACTGCGGTCAATGCTGCTGAGCAAACTGTGGGGGGATTCCAGGT
CTCCGCGGTGGCGTTCGACGCGGACGGCCTGACCATGGGTGTTGGTACCA
GCTCGGCGCACTGCTTGACGTTCGATCTGCGCTCAGCCCGGCCTACATTT
GTGAAAGAGCACCAGTATGGGCTTCCGGTCACTAGCGTCAAGTTCCACCA
GGTCTCCGCGGTGGCGTTCGACGCGGACGGCCTGACCATGGGTGTTGGTA
CCAGCTCGGCGCACTGCTTGACGTTCGATCTGCGCTCAGCCCGGCCTACA
TTTGTGAAAGAGCACCAGTATGGGCTTCCGGTCACTAGCGTCAAGTTCCA
CCAG
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