mRNA_H-paniculata_contig20346.5268.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI) HSP 1 Score: 393 bits (1010), Expect = 1.080e-130 Identity = 192/230 (83.48%), Postives = 210/230 (91.30%), Query Frame = 1
Query: 16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPS-TSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ 702
PP + VF+V+DLSMKFERHLDCEAVDFMPLA+GYEKLAFLLADRTLAFHAGYGKHHSVRIP+FGRSLAY RETCDM+VGCG GE+HRFNLDQGRFRT + LPS +S S GNP+AGINKIEL AHQLL A TDDGFVHLWD+RQGQSGGGR VASLDLR++V A AV AAEQT+GGFQVS+VAFD DGLTMGVGTSSAHCLTFDLRS+RPTFVKEHQYGLP+T +KFHQ
Sbjct: 76 PPQI-KVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAFHAGYGKHHSVRIPRFGRSLAYQRETCDMMVGCGDGEIHRFNLDQGRFRTAMTLPSGSSSSQGNPTAGINKIELCVAHQLLAAGTDDGFVHLWDSRQGQSGGGRAVASLDLRDSVDAAAVTAAEQTLGGFQVSSVAFDTDGLTMGVGTSSAHCLTFDLRSSRPTFVKEHQYGLPITGIKFHQ 304
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.050e-66 Identity = 122/228 (53.51%), Postives = 152/228 (66.67%), Query Frame = 1
Query: 16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
PP V V++V++LSMKFERHLD E V L+ G+EKL FL ADRTLAFHA YG HH+VRIP+FGR LAY + CD++VG G E++R NLD+GR+R P+ LP G+ NK+ L+ HQLL A TDDG+VH++D R G G VASL L T +V+A+AF DGLT+GVGTS+A CL +DLRS+ P K+HQYGLPVT VKFH
Sbjct: 93 PPQV-KVYEVAELSMKFERHLDAECVAMEVLSAGFEKLVFLQADRTLAFHAAYGMHHAVRIPRFGRDLAYQQAACDLIVGGAGPELYRLNLDEGRYRAPLTLPGDGGT--------NKLALSSVHQLLGAGTDDGWVHMFDTRAGGRGKA-PVASLHLGGGGAET------------EVTALAFAPDGLTLGVGTSAAQCLLYDLRSSDPLLTKDHQYGLPVTDVKFH 298
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A8K1FME9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FME9_PYTOL) HSP 1 Score: 204 bits (518), Expect = 9.730e-58 Identity = 107/228 (46.93%), Postives = 140/228 (61.40%), Query Frame = 1
Query: 19 PAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLD-LREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
P + VFDV +LS+KFER LD E V F L+ + KLAFL ADRTLAFHA YG H+++RIP+FGR + YHRE CD+ + EV+R NLDQGRF P+ + S++ N ++L HQLL +DG V WD R R V LD + VGA + G +++++ FD DGLT GVGTS+ HCL +DLRS++P K HQYGLP+ +KFH
Sbjct: 76 PPIVKVFDVRELSLKFERRLDSEVVQFEILSPDFGKLAFLQADRTLAFHAPYGSHYNLRIPKFGRDMCYHRENCDIYIAASASEVYRVNLDQGRFLAPLEIGSSAA---------NVVKLNPIHQLLGVGCEDGMVECWDTRSQ-----RRVGLLDSIPSLVGARDLEK------GVEITSLEFDDDGLTFGVGTSNGHCLLYDLRSSKPLLQKTHQYGLPILDIKFH 283
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.060e-57 Identity = 111/228 (48.68%), Postives = 146/228 (64.04%), Query Frame = 1
Query: 16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
PP+V VFDV DLS+KFER LD E V F LA + KLAFL ADR++AFHA YG H+++RIP+FGR + YHRE C++ V G +V+R NLDQGRF P+ L S S + N I+L HQL+ +DG V ++D+R Q V SLD+ A T+ +Q +V+A+ FD DGLT GVGTS CL +DLRS+RP K+HQYGLP+ +++FH
Sbjct: 78 PPSV-KVFDVRDLSLKFERGLDAEVVQFEVLAADFGKLAFLQADRSVAFHAPYGTHYNMRIPKFGRDMTYHRENCEIYVAASGSDVYRINLDQGRFVAPLELQSQSSAA-------NVIQLNPVHQLIGVGCEDGVVEMFDSRSQQR-----VGSLDV--AAQCTSAKPTKQV----EVTALRFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKDHQYGLPIVNLQFH 286
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A4D9D2Q4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Q4_9STRA) HSP 1 Score: 196 bits (499), Expect = 1.650e-57 Identity = 107/229 (46.72%), Postives = 145/229 (63.32%), Query Frame = 1
Query: 16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ 702
PPAV V+++ ++S+KFER L E VDF+ L++ KL FL DRTL+FHA YG H+S+RIP FGR+L YH +CD+ + E++R NL++GRFR P+ S G +N + L H LL A DG V ++D R ++ ++SLD+ AV A A G VSA+ FD DGLTM VGTS+ HCL +DLRS+RP +KEHQYGLP+ ++KFHQ
Sbjct: 76 PPAV-RVYELQEMSLKFERRLTAEVVDFLILSEDVGKLCFLQNDRTLSFHAPYGTHYSLRIPTFGRALTYHPPSCDLYIAAAASELYRLNLEEGRFRAPVPCSSPGG--------VNVLALNPVHFLLGAGGVDGRVEMFDPRSREA-----LSSLDVAGAV-AEAGRWGGGPEEGMAVSALEFDRDGLTMAVGTSAGHCLLYDLRSSRPRALKEHQYGLPIVALKFHQ 289
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: A0A662WTJ8_9STRA (NUC153 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTJ8_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.360e-57 Identity = 110/228 (48.25%), Postives = 144/228 (63.16%), Query Frame = 1
Query: 16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
PP+V VFDV DLS+KFER LD E V L+ + KLAFL +DR++AFHA YG H+++RIP+FGR + YHRE C++ VG G +V+R NLDQGRF P+ L S + N ++L HQLL DDG V ++D+R Q V SLD VGA ++A +V+A+ FD DGLT GVGTS CL +DLRS+RP K HQYGLP+ +++FH
Sbjct: 78 PPSV-KVFDVRDLSLKFERRLDAEVVQLEVLSSDFGKLAFLQSDRSVAFHAPYGTHYAMRIPKFGRDMCYHRENCELYVGASGADVYRLNLDQGRFLAPLELRSAYSAA-------NVVQLNPIHQLLGVGCDDGVVEMFDSRSQQR-----VGSLD----VGAHFSSSAGADASPVEVTALQFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKTHQYGLPIINLQFH 288
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: M4BWD3_HYAAE (NUC153 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWD3_HYAAE) HSP 1 Score: 202 bits (514), Expect = 4.080e-57 Identity = 107/227 (47.14%), Postives = 142/227 (62.56%), Query Frame = 1
Query: 19 PAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
P + VFDV DLS+KFER LD E V F L+ + KLAFL ADR++ FHA YG H+S+RIP+FGR + YHRE C++ V G EV+R NLDQGRF +P+ L S S + N ++L HQLL +DG V ++D+R Q G VA+ R + A++ V +++A+ FD DGLT GVGTS CL +DLRS RP K HQYGLP+ +++FH
Sbjct: 78 PPLVKVFDVRDLSLKFERGLDAEVVQFEVLSSDFGKLAFLQADRSVTFHAPYGAHYSLRIPKFGRDMTYHRENCELYVAASGSEVYRINLDQGRFVSPLELQSQSSAA-------NVVQLNPIHQLLGVGCEDGVVEMFDSRSQQRVGSLDVAAQCAR--------SKADKQV---EITALRFDDDGLTFGVGTSEGQCLLYDLRSTRPLLEKSHQYGLPIVNLQFH 286
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: W7TBN4_9STRA (Nucleolar protein 10 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBN4_9STRA) HSP 1 Score: 202 bits (515), Expect = 4.480e-57 Identity = 109/229 (47.60%), Postives = 147/229 (64.19%), Query Frame = 1
Query: 16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ 702
PPAV V+++ ++S+KFER L E VDF+ L++ KL FL DRTL+FHA YG H+S+RIP FGR+L YH +CD+ + E++R NL++GRFR P+ S G +N + L H LL A +DG V ++D R ++ ++SLD+ AV A A GG VSAV FD DGLTM VGTS+ HCL +DLRS+RP +KEHQYGLP+ ++KFHQ
Sbjct: 76 PPAV-RVYELQEMSLKFERRLTAEVVDFLILSEDVGKLCFLQNDRTLSFHAPYGTHYSLRIPTFGRALTYHPPSCDLYIAAAASELYRLNLEEGRFRAPVPCSSPGG--------VNVLALNPVHFLLGAGGEDGRVEMFDPRSREA-----LSSLDVAGAV-AEAGRWGGGPEGGMAVSAVEFDRDGLTMAVGTSAGHCLLYDLRSSRPLALKEHQYGLPIVALKFHQ 289
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: F0W0F6_9STRA (Nucleolar protein 10 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0F6_9STRA) HSP 1 Score: 201 bits (510), Expect = 1.170e-56 Identity = 109/230 (47.39%), Postives = 143/230 (62.17%), Query Frame = 1
Query: 16 PPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDAR-QGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFHQ 702
PP+V V+DV DLSMKFER LD E V F L+ KL FL DRTL FHA YGKH+S+RIP FGR LAYHR+ CD+ + G EV+R NLDQG+F +P+++ S+ G N IEL HQL+ +DG + WD+R Q G +SL + V + N G Q++++A+ DGLT VGTSS HC+ +DLRS++P +K HQYGL + VKFH+
Sbjct: 76 PPSV-KVYDVRDLSMKFERRLDAEVVQFEILSHDIGKLCFLQTDRTLTFHAAYGKHYSLRIPTFGRDLAYHRQHCDLYIAASGSEVYRVNLDQGQFLSPLSILSS---------GANVIELNPVHQLVGVGCEDGTIECWDSRIQKHVGRLDVFSSLSAKHFVSS---NTESNHQG--QITSLAYHDDGLTFAVGTSSGHCMLYDLRSSKPLLIKSHQYGLGILDVKFHE 290
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Match: H3GLA6_PHYRM (NUC153 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLA6_PHYRM) HSP 1 Score: 201 bits (510), Expect = 1.470e-56 Identity = 106/227 (46.70%), Postives = 139/227 (61.23%), Query Frame = 1
Query: 19 PAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRTLAFHAGYGKHHSVRIPQFGRSLAYHRETCDMLVGCGGGEVHRFNLDQGRFRTPIALPSTSGSLGNPSAGINKIELAQAHQLLVAATDDGFVHLWDARQGQSGGGRTVASLDLREAVGATAVNAAEQTVGGFQVSAVAFDADGLTMGVGTSSAHCLTFDLRSARPTFVKEHQYGLPVTSVKFH 699
P + VFDV DLS+KFER LD E V F L+ + KLAFL ADR++AFHA YG H+++RIP+FGR + YHRE C++ V G +V+R NLDQGRF P+ L S + + N +++ HQLL DDG V ++D R Q V SLD+ A A + +V+A+ FD DGLT GVGTS CL +DLRS+RP K HQYGLP+ ++FH
Sbjct: 78 PPLVKVFDVRDLSLKFERGLDAEVVQFEVLSADFGKLAFLQADRSVAFHAPYGSHYNMRIPKFGRDMCYHRENCELYVAASGSDVYRLNLDQGRFGAPLELQSQASAA-------NVVKMNPIHQLLGVGCDDGIVEMFDTRSQQR-----VGSLDV-------AAYCASSSDKQLEVTALRFDDDGLTFGVGTSEGQCLLYDLRSSRPLLEKNHQYGLPIVDLQFH 285 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20346.5268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20346.5268.1 >prot_H-paniculata_contig20346.5268.1 ID=prot_H-paniculata_contig20346.5268.1|Name=mRNA_H-paniculata_contig20346.5268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp MYHSLPPAVCTVFDVSDLSMKFERHLDCEAVDFMPLADGYEKLAFLLADRback to top mRNA from alignment at H-paniculata_contig20346:302..4508- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20346.5268.1 ID=mRNA_H-paniculata_contig20346.5268.1|Name=mRNA_H-paniculata_contig20346.5268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4207bp|location=Sequence derived from alignment at H-paniculata_contig20346:302..4508- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20346:302..4508- >mRNA_H-paniculata_contig20346.5268.1 ID=mRNA_H-paniculata_contig20346.5268.1|Name=mRNA_H-paniculata_contig20346.5268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig20346:302..4508- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |