prot_H-paniculata_contig2034.5265.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2034.5265.1
Unique Nameprot_H-paniculata_contig2034.5265.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length381
Homology
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BLAST of mRNA_H-paniculata_contig2034.5265.1 vs. uniprot
Match: D7FH14_ECTSI (Hypothetical F-box and leucine rich repeat containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH14_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 3.660e-131
Identity = 277/376 (73.67%), Postives = 302/376 (80.32%), Query Frame = 0 
Query:    5 LPEDQFLNLLSYLVVDSVFAISSTCHQLHDWCSLCKVAHSGEEEIEDVDLALLFRRFPKVNDLTLGYASRPTRETYKALAEVGPQLISLKLTGARIIDCNTFRDMVCRFENMRHLFLSGTFYVKSNAINALAKAGTQLQEVCLCGFRQLKDEDVQLLLDSCPSLTALSVGDCTSLSSLVLVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLEHLGLRGCSALTSPDLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSLDLPIMLELDLSMLGIMKLTLSCSKLLYANLRGSYKLTSANIRSRCPCLSVVDLCGTKINPEAFARSDGEGEGGVIQGGAPLPWHTY 380
            +PEDQFLN+LSYLVVDSVFA+SSTC QLH+WCSL K   +GEEE+ + DLALL RRFP VNDLT+  ASR T   Y+ LAE+GPQL+SLKLTGARII  +TFRDMV  FE+MR+L L GTFYVKS AINALAKAG QLQEV LCGFRQLKDEDVQ LLDSCPSL+ LSV DCT+L SLVL S     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +LEHLGL+GCSAL SP +        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         + LDLSMLG+  LTL+C+KL+YANLRGSYKL SANI+SRCP LSVVDLCGTKINPEAF RSDGEGEG VIQGGAPLPWHTY
Sbjct:    9 MPEDQFLNVLSYLVVDSVFAMSSTCRQLHEWCSLFKAVDAGEEELRNADLALLVRRFPAVNDLTIRSASRLTT-AYEVLAEIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEVSLCGFRQLKDEDVQFLLDSCPSLSVLSVADCTTLGSLVLRSTQLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDCAVESLMGSCLALEHLGLKGCSALVSPTIQSAKLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLDLSMLGVKNLTLNCNKLVYANLRGSYKLESANIQSRCPGLSVVDLCGTKINPEAFVRSDGEGEGDVIQGGAPLPWHTY 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2034.5265.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH14_ECTSI3.660e-13173.67Hypothetical F-box and leucine rich repeat contain... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 207..232
e-value: 25.0
score: 11.4
coord: 165..188
e-value: 150.0
score: 5.3
coord: 254..281
e-value: 20.0
score: 12.1
coord: 113..138
e-value: 250.0
score: 3.7
coord: 139..164
e-value: 17.0
score: 12.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 203..363
e-value: 6.7E-8
score: 33.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 4..202
e-value: 4.6E-22
score: 80.4
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 57..355
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 281..302
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..280
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 303..380
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 203..352
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 53..248

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2034contigH-paniculata_contig2034:3334..11832 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2034.5265.1mRNA_H-paniculata_contig2034.5265.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2034 2453..12188 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2034.5265.1 ID=prot_H-paniculata_contig2034.5265.1|Name=mRNA_H-paniculata_contig2034.5265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=381bp
MRLVLPEDQFLNLLSYLVVDSVFAISSTCHQLHDWCSLCKVAHSGEEEIE
DVDLALLFRRFPKVNDLTLGYASRPTRETYKALAEVGPQLISLKLTGARI
IDCNTFRDMVCRFENMRHLFLSGTFYVKSNAINALAKAGTQLQEVCLCGF
RQLKDEDVQLLLDSCPSLTALSVGDCTSLSSLVLVSPNLLTLDVSRCIHI
IEMCLDMPALICLDASWCTKLPDSAIETLLASCASLEHLGLRGCSALTSP
DLFSSNLKSLDLSLCGNLTACDVSCQALTNLSVAMCMALASLSLDLPIML
ELDLSMLGIMKLTLSCSKLLYANLRGSYKLTSANIRSRCPCLSVVDLCGT
KINPEAFARSDGEGEGGVIQGGAPLPWHTY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf