mRNA_H-paniculata_contig20331.5264.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20331.5264.1
Unique NamemRNA_H-paniculata_contig20331.5264.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20331.5264.1 vs. uniprot
Match: D7G4H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H8_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 8.490e-9
Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 1 
Query:   61 SVTVACTEIQVGTTAVSVHKSA*PVVQEN*RIGQKHHSSGSRYTSHVAAQEGLIVVSDDGLCCIVE*WHCKK--GGTEARGK--VVGGVLEIVRDRMRGQMRMTQALLEDESDEATDAVQELLFARLAPLLLLSALPPKTLTLED 483
            + +V  T++    + V++  +  P   E    G     +G  + S + + E +   +   +         +K  GG   R +   + GVL++VR RM GQ R+++ LL DES EA++ V+ LLF RL PLL+L+ALPP  L  ED
Sbjct: 1036 AASVVPTDVAEDISTVTLSPTDTPASTETSAAGTPVTCTGEEHQSGLLSAESVATGARTAVGGEARAGRRRKRSGGCSKRRRRSTLAGVLQLVRGRMTGQARLSEDLLGDESQEASETVRALLFCRLTPLLILNALPPAALLSED 1180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20331.5264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4H8_ECTSI8.490e-932.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20331contigH-paniculata_contig20331:890..3181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size725
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20331.5264.1prot_H-paniculata_contig20331.5264.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20331 1226..3181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.1030166-UTR-H-paniculata_contig20331:889..12251622929528.1030166-UTR-H-paniculata_contig20331:889..1225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20331 890..1225 +
1691480899.6317086-UTR-H-paniculata_contig20331:889..12251691480899.6317086-UTR-H-paniculata_contig20331:889..1225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20331 890..1225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.119066-CDS-H-paniculata_contig20331:1225..12701622929528.119066-CDS-H-paniculata_contig20331:1225..1270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20331 1226..1270 +
1691480899.6398299-CDS-H-paniculata_contig20331:1225..12701691480899.6398299-CDS-H-paniculata_contig20331:1225..1270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20331 1226..1270 +
1622929528.133924-CDS-H-paniculata_contig20331:2839..31811622929528.133924-CDS-H-paniculata_contig20331:2839..3181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20331 2840..3181 +
1691480899.6477113-CDS-H-paniculata_contig20331:2839..31811691480899.6477113-CDS-H-paniculata_contig20331:2839..3181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20331 2840..3181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20331.5264.1

>prot_H-paniculata_contig20331.5264.1 ID=prot_H-paniculata_contig20331.5264.1|Name=mRNA_H-paniculata_contig20331.5264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MRGQMRMTQALLEDESDEATDAVQELLFARLAPLLLLSALPPKTLTLEDT
NVLAGRGPPASTNMLGSHDSANTTAYQDHKTFASEDLVSQDPAETLAYHD
VKTRALQRGTPDIQACPDATGVGGVCQGG
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mRNA from alignment at H-paniculata_contig20331:890..3181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20331.5264.1 ID=mRNA_H-paniculata_contig20331.5264.1|Name=mRNA_H-paniculata_contig20331.5264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig20331:890..3181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAATTTCACAGACTGGGCCTGCTCCTTGAGTGCTTCTTTGTGACCG
GCGGGACATTTCAGTAACTGTTGCGTGTACCGAAATACAGGTAGGTACCA
CTGCTGTTTCTGTGCACAAATCTGCTTAACCTGTCGTGCAAGAAAACTGA
AGAATAGGGCAAAAACACCACTCCTCTGGTAGCAGGTACACATCACATGT
GGCAGCTCAGGAAGGGTTGATCGTTGTAAGTGATGATGGATTGTGTTGTA
TTGTTGAATGATGGCACTGTAAGAAAGGTGGAACGGAGGCCCGTGGCAAG
GTGGTCGGCGGCGTGCTAGAGATCGTACGTGACAGGATGCGAGGACAGAT
GAGGATGACCCAAGCTTTGCTCGAAGATGAGGTGCGAAATGTGCATGTAG
CACGAAGCTCTTGTTACCACTATTGGAGCTATGTATGAAATAAAACGTAA
AAAATGCTGCAAAAGTTGACGACTGGCTCGCGCAGCGTACACACACACAT
GGTGGGTGTGTAATAAAGACCTGTTTGTAATAGTTTCTTTTGCGGATTTT
CAATTCTCTTTTTTTTACTGTGCACTTTAAAGTCATCCGTTTTTTCGCGT
GTTAAAACGATTTCAGGAAATAGGCATAGTCGGGATATATCGCTTAGTGC
CAATTTCCGATCGATTATTTTTTATGTGATTATCCGAGCGTTGGCTTGTA
TGAAAGGTCGACCCTGCCGTTTTCATGTGAAACAGGCGCGGTATCAACGG
CCCGTGTTTAACATTCAGTTTTATCCCGGTTTAGAACTGCAGAAAGTAAC
GCTGGAAATACTGAACCACAATGCAATAGCTGGAAGCCAGCATGAAATTC
CGAACGGATACCAGAACTAAGCTTGGGACAGCTCGTATGAAATCCACGAG
TGTTCATCTTTCGAACGAAATCACGAGCTCCCAGAGATGAGCGATATATC
AAAAGGCACTGCTCTTCAATGATAATTACCTGCTTTACCACGGACCTACG
CCCGAACGGGTAGAGTAGCTCGTGAACTGAGCATGACTGGAAGTCTAGTC
AGGGGTCTTTGAGTGGGTGCCACCCCCACACTGCCTACTTGGTTCGGCCG
AACCGGCGTGGCGCCTACCCCGCAGAGGAACAAATAACTCTGTTCTGTTG
AAGGAAATGTAGAAATACTTCGGTAGAATACTACTGTATGGAAGCATCGG
ATAAAGGTTTTTGCCTTAGCCGTCGGGGGAATAAAAAAAAGAAAAAAAAC
CTGCGTGATGGGTCGGCAGGTGGTATGAAGTGATAGGTGTGCACACCTTG
AATATTAAGGCTAGTTTCGCACAACGTTGCGAGCTAACTTCGTAGTATTT
GCTGTTATTGGTTGGTCACTCCAGTTCTTTCATCAATTCGACCTGCCAAG
TGGCTATCTCCTATCAAAATATCTACCAGTTTCGACTTTATGTCGAGGGA
GCGTTTCCCAATCGCTTTCCTGCACAACGACTCTTGAGCGAGACCTGTAA
AAATTGCCGTCTCCATTATGGGGTTGAGTATATTCCACAGGTGTACATTC
GACAGAACGCGTTGTAGAATATTGATTCAATATAGAACGCATGTGCATAG
TGTTGTCAGATCATCTGCCTAAAATAGAACGTCCTTTCAAATGTTGTCAG
ATCTACTATTATAGAACATGGCCAATCCTAGAACGGATTTCTAGATCAAG
CAGAAATTGTTCTGTTCTGTGGTACCTGTGAAATATTTTCCCTAGCCCGG
TGTTGATGAGGGTAAAATGTGGCAAGGGGGAGGATATACTTTATCTAGCC
GCTTTGCAAATCCGCTTAAATCTTGAATCAATTTGGCTTAAATTACCCCC
CCCTACCCCGCGCGCTCGCCATACCTTAGCCCGACTCAGAAGCGTTTCTT
TTGCGCCCACAGGAATCCGTTAACACTCTAGCATTGTTTTGTGTCCACAG
TCCGACGAAGCCACCGACGCCGTGCAGGAGCTCCTCTTCGCCCGTCTAGC
CCCGCTCCTGCTCCTCAGTGCCCTGCCCCCCAAGACTCTAACGCTCGAAG
ACACCAATGTGCTAGCGGGTCGAGGACCTCCAGCAAGCACCAACATGCTG
GGGTCGCACGACTCCGCCAACACTACAGCTTACCAAGACCACAAAACATT
CGCCTCCGAAGACCTTGTGTCCCAAGACCCTGCCGAGACGCTAGCGTACC
ATGACGTTAAAACGCGAGCGCTGCAGCGAGGTACCCCCGACATTCAAGCG
TGCCCAGACGCCACAGGCGTTGGAGGCGTGTGCCAAGGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig20331:890..3181+

>mRNA_H-paniculata_contig20331.5264.1 ID=mRNA_H-paniculata_contig20331.5264.1|Name=mRNA_H-paniculata_contig20331.5264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig20331:890..3181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGGACAGATGAGGATGACCCAAGCTTTGCTCGAAGATGAGATGCG
AGGACAGATGAGGATGACCCAAGCTTTGCTCGAAGATGAGTCCGACGAAG
CCACCGACGCCGTGCAGGAGCTCCTCTTCGCCCGTCTAGCCCCGCTCCTG
CTCCTCAGTGCCCTGCCCCCCAAGACTCTAACGCTCGAAGACACCAATGT
GCTAGCGGGTCGAGGACCTCCAGCAAGCACCAACATGCTGGGGTCGCACG
ACTCCGCCAACACTACAGCTTACCAAGACCACAAAACATTCGCCTCCGAA
GACCTTGTGTCCCAAGACCCTGCCGAGACGCTAGCGTACCATGACGTTAA
AACGCGAGCGCTGCAGCGAGGTACCCCCGACATTCAAGCGTGCCCAGACG
CCACAGGCGTTGGAGGCGTGTGCCAAGGTGGGTCCGACGAAGCCACCGAC
GCCGTGCAGGAGCTCCTCTTCGCCCGTCTAGCCCCGCTCCTGCTCCTCAG
TGCCCTGCCCCCCAAGACTCTAACGCTCGAAGACACCAATGTGCTAGCGG
GTCGAGGACCTCCAGCAAGCACCAACATGCTGGGGTCGCACGACTCCGCC
AACACTACAGCTTACCAAGACCACAAAACATTCGCCTCCGAAGACCTTGT
GTCCCAAGACCCTGCCGAGACGCTAGCGTACCATGACGTTAAAACGCGAG
CGCTGCAGCGAGGTACCCCCGACATTCAAGCGTGCCCAGACGCCACAGGC
GTTGGAGGCGTGTGCCAAGGTGGG
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