mRNA_H-paniculata_contig20324.5262.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20324.5262.1
Unique NamemRNA_H-paniculata_contig20324.5262.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20324.5262.1 vs. uniprot
Match: D7FXA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.540e-38
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 LRSKYPSPVHFFKHKCVYTFHHPFEASTITMEMFYRDMRATVISDALGGKSHQMRFKIDHPLCHYVRDYSHDDPSHFVMIEFSSSVDAQR 270
            LR KYPSPV FF HKCVYTFHHPFEA+ ITMEMF+RDMR    S AL     ++RFKIDHPLCHY +DYSHDDPSHFV+I+FSS +DA+R
Sbjct:  142 LRCKYPSPVAFFNHKCVYTFHHPFEATRITMEMFFRDMR----SAALDSPRRELRFKIDHPLCHYTKDYSHDDPSHFVVIQFSSGLDAER 227
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BLAST of mRNA_H-paniculata_contig20324.5262.1 vs. uniprot
Match: A0A6H5K4P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.210e-19
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   91 MEMFYRDMRATVISDALGGKSHQMRFKIDHPLCHYVRDYSHDDPSHFVMIEFSSSVDAQR 270
            MEMF+RDMR+ V    L  +  ++RFKIDHPLCHY +DYSH+DPSHFV+I+FSS +DA R
Sbjct:    1 MEMFFRDMRSAV----LDHRRRELRFKIDHPLCHYTKDYSHNDPSHFVVIQFSSGLDADR 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20324.5262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXA3_ECTSI1.540e-3872.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4P7_9PHAE4.210e-1963.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20324contigH-paniculata_contig20324:135..2935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue2e-30
Seed eggNOG ortholog2880.D7FXA3
Hectar predicted targeting categoryother localisation
EggNOG OGs2E32A@1,2SA7F@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004610.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.9699156-CDS-H-paniculata_contig20324:134..3441622929527.9699156-CDS-H-paniculata_contig20324:134..344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20324 135..344 -
1691480899.60421-CDS-H-paniculata_contig20324:134..3441691480899.60421-CDS-H-paniculata_contig20324:134..344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20324 135..344 -
1622929527.990824-CDS-H-paniculata_contig20324:2851..29351622929527.990824-CDS-H-paniculata_contig20324:2851..2935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20324 2852..2935 -
1691480899.613085-CDS-H-paniculata_contig20324:2851..29351691480899.613085-CDS-H-paniculata_contig20324:2851..2935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20324 2852..2935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20324.5262.1prot_H-paniculata_contig20324.5262.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20324 135..2935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20324.5262.1

>prot_H-paniculata_contig20324.5262.1 ID=prot_H-paniculata_contig20324.5262.1|Name=mRNA_H-paniculata_contig20324.5262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
LRSKYPSPVHFFKHKCVYTFHHPFEASTITMEMFYRDMRATVISDALGGK
SHQMRFKIDHPLCHYVRDYSHDDPSHFVMIEFSSSVDAQRADREVPAL
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mRNA from alignment at H-paniculata_contig20324:135..2935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20324.5262.1 ID=mRNA_H-paniculata_contig20324.5262.1|Name=mRNA_H-paniculata_contig20324.5262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2801bp|location=Sequence derived from alignment at H-paniculata_contig20324:135..2935- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACGCAGCAAATACCCATCACCGGTGCACTTTTTCAAGCATAAGTGCGT
CTACACGTTCCATCATCCCTTCGAGGCCTCCACCGTGAGTCCCAGGTGCA
GCGTAAAAAAAGGCATTGGGCCCCATACATTGCACTCCAAAACAAGCTCC
TCGAAAATGTTTGGCTGTGAAGAAAACAATATCGGATAGGACGTAAGCCT
CGTCGAAATTTTCGCCGGTTAATCATAGGTAATTTCTTACGGGCGTTCGG
TTCTGCACTGCCTTCGAAACTTGATCTCTCTTTGTTTCAACAAGATGATT
CTCATCCTAGAACGTAAAACTTGCCACGAACCAATACTACCAACTCGTTC
CGATCCTTTCAATTTTTCTGCATTTTCGCATGTGTATTTCATTTCTGTAC
ATTGTACTGGTACTAAATGGAAATTTCATTTGTTGGTATACTACTAGTGT
TTTTGCCTTCCGACAAAGTGCAGATAACAGCATATTGGTGAAATGGGAAC
CCAGGGTCCCCATCTCAAACTTGGGTTCCCATTTCACCAATATGCTATTA
GATATAGACGTGCCTGTTGGTAAGGAAGGGTCAAATCACATCTAGGAGAA
TCGTTGAAAGCTTATTCTAGATACTGCACGTCATGAAATCCTTTGGAAAA
TATACCAAACAGACGTCTTTGTCGTCCGGTCTAGCGAAGTACGAACCAGC
GCAGTGAGTTTCTAACCGCCCAAAACCACGTGGACAATGACCTCTATAGT
TAATCCTTGGGGTGTATATACTCTCGCTTAATGTACGAGATCGTCGACAC
CTACTCTGATTCTCCTTGACCTGTATATTCCGCCAATTAATCTGTAGCCT
TCTCCCGATTTACAGAACCGTCATGTTCCACTCCCAGGCTCGGGATAAAG
GGTGCCGTTCACATCGTTATCTGTCTACTCGTATGCATGTCTCATTTATC
AAAAGAGTACTGGCACATCAAAAATAGGGGCTGTTGTCGAGACAAGAACA
CGTACATACTGTAAGGGGTTCGGCTGTTAGACCATAGTCTACCAGTTCTT
GTGCCATCAGTTCAGTTCGGGGATGTCAAAGTGCAGCGATTTTTTTCGGA
ATCGTTTCGCCCAGGAATCGAGTTTTCATCACACTCGAGTACGGCGCTGA
CCCGTCGGCCATCCTCGCAGAGTACTGCAAGGTCATCTTTTCTTCGCGTT
CGCCGTCTCTTAGATATCGCTCCAGTAGAATACCATATTTTTACAACTCT
CAGTGTTTGACTTCAGTGTGGTGCAAGTAGTGATACACCTTTAGGATTTG
AAAGTTGCTGAATATCTCTCGACATGGTTCTGGGCCAAATAACCGCAGCA
TGAAACACGTGTATGGATATTCACAAACAAACCTACTAACATACATACCA
AGTGTGGGGAGCTTACCACACAGACTGTTAAGATATATAGATATCCTTGT
GGTTTATGACGCAGTAATACAGACGCAGTAGTTTACTTGTTCATATATTA
TGATGCGCAGACAAGAGTGAGACAAAGGGGGTCGGTGAACCTCCCATGTC
GTGGACAATATCTTGCTCTAGATATTCACAAATAACTTGCGGAGCATTCC
AGCTCCTGAACATCCAATAAGCAACAAACCGCGGAACGTTCCGACTCTAG
AACATTCGAAACAATATTCCGTGCCAACCTCTCGACGATCGATACTATGC
ATTATCGTATCGCATCTTCTTTCCTCAGCACGTTCTAGGTCCATGTATCC
ACGTTTTTACCAGGGGTCGAGGTCGTCATGTTCCTGTTTGTGCTATGTCA
ACTCATTTCTGTTCCATGTATTGCACATGCGAGGGATGCTGTCATACTCC
CGGGCGGGTGCTGTAGTCGGCGTGCTGTCTCTAGCCTGGGCTGTCCAACC
AGTCGAGGCATTTTTTCGTCGAATCGGGTGAAATCGATGCCATACCGTTG
TGTAGATGTCGACCCCAGTTGGTTCACTTAGCACACCAAGACACCCCGAG
GTCTGCTCGTGTCAACTTAGGTTCTGATGTAAAATAGATGTCTTCTTCTC
ACCTAGACCTCATAGGTAGATACTGCGTGAATATAGCAACGACACCATGT
CTATTGATTTTCCAACCCCCCCAACCTCCCCACGCTCCCCTCGCCGGGCT
TCGACCGCCCACCTCCAACACGCTTTGTGCGTTTTTCCTCCCCTCCTTTC
TATTTTAACTTAGGAATGATCTAAACCAAGTTGTGTTTCGTCCTATTTTT
CGTCTTTCGTTTTCCGAAATATGGAAGTCGCGAGAGCGAACTGAACAAGT
GGGTGATTGTGGGTAAAGTGCACGAGATGTATGAGGGCAACATGATGTAC
AGTGCTTCTATATCTCTCCCCCGTTTGGGACTCGATATCGCGATTTCTCA
TTTTGGAAAACGGAAAAACGGAGAATATCGGACGAGAAACGTTTTCGTTC
AGAACGAGACTTAGCGAGCGGTGTTCCTTCTCTTCATCACCCCATCCTGA
GGTTTATCTTCGAACCTTGGCGGATTACCACGGGTAATGACCAGCTAAGA
TGTAAACGACGCACTGCATGCTGACTAAATAAACCCGTCAGATAACCATG
GAGATGTTCTACCGTGACATGCGAGCGACCGTCATATCGGATGCACTTGG
AGGCAAGAGCCATCAGATGAGGTTCAAGATAGATCATCCCCTGTGTCACT
ACGTGAGGGATTACTCTCACGATGACCCGTCGCACTTCGTGATGATTGAG
TTCAGCTCAAGCGTGGACGCACAGCGGGCCGATCGAGAGGTACCTGCGCT
C
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Coding sequence (CDS) from alignment at H-paniculata_contig20324:135..2935-

>mRNA_H-paniculata_contig20324.5262.1 ID=mRNA_H-paniculata_contig20324.5262.1|Name=mRNA_H-paniculata_contig20324.5262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig20324:135..2935- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACGCAGCAAATACCCATCACCGGTGCACTTTTTCAAGCATAAGTGCGT
CTACACGTTCCATCATCCCTTCGAGGCCTCCACCTTACGCAGCAAATACC
CATCACCGGTGCACTTTTTCAAGCATAAGTGCGTCTACACGTTCCATCAT
CCCTTCGAGGCCTCCACCATAACCATGGAGATGTTCTACCGTGACATGCG
AGCGACCGTCATATCGGATGCACTTGGAGGCAAGAGCCATCAGATGAGGT
TCAAGATAGATCATCCCCTGTGTCACTACGTGAGGGATTACTCTCACGAT
GACCCGTCGCACTTCGTGATGATTGAGTTCAGCTCAAGCGTGGACGCACA
GCGGGCCGATCGAGAGGTACCTGCGCTCATAACCATGGAGATGTTCTACC
GTGACATGCGAGCGACCGTCATATCGGATGCACTTGGAGGCAAGAGCCAT
CAGATGAGGTTCAAGATAGATCATCCCCTGTGTCACTACGTGAGGGATTA
CTCTCACGATGACCCGTCGCACTTCGTGATGATTGAGTTCAGCTCAAGCG
TGGACGCACAGCGGGCCGATCGAGAGGTACCTGCGCTC
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