mRNA_H-paniculata_contig20322.5261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20322.5261.1
Unique NamemRNA_H-paniculata_contig20322.5261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: D7FMU9_ECTSI (Putative serine-threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU9_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 2.920e-52
Identity = 80/102 (78.43%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            VGLLK+L SPNIV+LHTCFL+ + LWVVM+W+DGGDLKGVL RT++A QRL+E+ VWGYFTQICDALLHMHG+RI+HRD+KPANV V RDG VKLGDLGLGR
Sbjct:  220 VGLLKNLASPNIVKLHTCFLDHNALWVVMDWMDGGDLKGVLRRTKQAGQRLDEITVWGYFTQICDALLHMHGERIIHRDVKPANVFVSRDGIVKLGDLGLGR 321
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: A0A6H5KNN9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN9_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.710e-41
Identity = 78/148 (52.70%), Postives = 92/148 (62.16%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKG----------------------------------------------VLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            VGLLK+L SPNIV+LHTCFL  + LWVVM+W+DGGDLKG                                              VL RT+++ +RL+E+ VWGYFTQICDALLHMHG+RI+HRD+KPANV V RDG VKLGDLGLGR
Sbjct:  475 VGLLKNLASPNIVKLHTCFLGHNALWVVMDWMDGGDLKGTEVSVVLFEGVAGMGMSWRQVIAVELRQYTDPTSCSTPKTTTAASGVLRRTKQSGRRLDEITVWGYFTQICDALLHMHGERIIHRDIKPANVFVSRDGIVKLGDLGLGR 622
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: F0Y2C1_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2C1_AURAN)

HSP 1 Score: 115 bits (287), Expect = 2.320e-29
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            V LL+SL  PNI+R     +E   L +V EW   GDLK  + +  +  Q   E  +W YF+QICDAL HMH QRI+HRDLKPANV +  +GTVK+GDLGLGR
Sbjct:   52 VRLLQSLHHPNIIRYLDSLIEGDELVIVFEWAAAGDLKRQIRKAVERKQGFEERVIWKYFSQICDALAHMHEQRILHRDLKPANVFLTLNGTVKVGDLGLGR 153
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: A0A7S2C573_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C573_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.590e-28
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            V LL+SL+ PN++     F+E + L ++ EW   GDLK  + + ++   R  E  +W YF QIC+A+ HMH +RIMHRDLKPAN+ +  +GTVK+GDLGLGR
Sbjct:   80 VRLLQSLRHPNVIEYLDSFIEGNELIIIFEWAAAGDLKRQIRKAQEREARFEERVIWRYFAQICEAIQHMHERRIMHRDLKPANIFLTLNGTVKVGDLGLGR 181
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: A0A7S1GED1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GED1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.620e-27
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            + L++ L  PNI+R    F+E + L +V E+ + GDLK  L + R+   R +E  +W YF+QI +AL HMH +R+MHRDLKPANV +  +GTVK+GDLGLGR
Sbjct:   82 IRLVQQLDHPNIIRYLDSFIEDNQLHLVFEYAEAGDLKRQLRKAREREARFDERVIWKYFSQIAEALRHMHERRVMHRDLKPANVFLTLNGTVKVGDLGLGR 183
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: A0A482R4P4_9EURY (Protein kinase domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R4P4_9EURY)

HSP 1 Score: 109 bits (272), Expect = 3.020e-27
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            + L++S+   NI+R    F+E   L +V E+ + GDLK  L + R+   RL+E  +W YF+QI DA+ HMH +RIMHRDLKPAN+ +  +GT+K+GDLGLGR
Sbjct:  126 IRLVQSMDHENIIRYLDGFVEDKQLILVFEFAEAGDLKRQLRKARERDLRLDERVIWKYFSQIADAVAHMHSKRIMHRDLKPANIFLTLNGTIKVGDLGLGR 227
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: A0A3P6SYQ6_LITSI (Protein kinase domain-containing protein n=10 Tax=Onchocercidae TaxID=6296 RepID=A0A3P6SYQ6_LITSI)

HSP 1 Score: 110 bits (275), Expect = 3.380e-27
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            + LLK L   N++R ++ F+E + L +V+E  D GDL  ++   +K+ + + E  +W YF Q+  AL HMH +RIMHRD+KPANV +  DGTVKLGDLGLGR
Sbjct:   65 IDLLKQLNHVNVIRYYSSFIENNQLNIVLELADAGDLSRMIRHFKKSRRLIPERIIWKYFVQLVRALEHMHSKRIMHRDIKPANVFITADGTVKLGDLGLGR 166
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: A0A183V1F1_TOXCA (Serine/threonine-protein kinase Nek7 n=3 Tax=Ascaridoidea TaxID=33256 RepID=A0A183V1F1_TOXCA)

HSP 1 Score: 110 bits (274), Expect = 4.500e-27
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            + LLK L   N++R +  F+E + L +V+E  D GDL  ++   +K+ + + E  +W YF Q+  AL HMH +RIMHRD+KPANV +  DGTVKLGDLGLGR
Sbjct:   65 IDLLKQLNHVNVIRYYASFIENNQLNIVLELADAGDLSRMIRHFKKSRRLIPERTIWKYFVQLVRALDHMHSKRIMHRDIKPANVFITADGTVKLGDLGLGR 166
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: A0A7S1TSS1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSS1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.420e-27
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            V LL+SL  PNI+R    F+E S L +V+EW   GDLK  L +  +      E  VW YF+QI +A+ HMH +RIMHRDLKPAN+ +  +G VK+GDLGLGR
Sbjct:   73 VRLLQSLDHPNIIRYLDSFIEGSELIIVVEWAAAGDLKRQLRKALEKQTHFEERVVWKYFSQIAEAIAHMHSRRIMHRDLKPANIFLTLNGQVKVGDLGLGR 174
[Close]
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Match: A0A0M0JFW8_9EUKA (Protein kinase 6 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFW8_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 7.960e-27
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 VGLLKSLQS-PNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQRLNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGLGR 306
            V LLK+L+  P I++    F++ S L++V EW + GDL+ +L R  ++   L E+ VW YF Q+CD + HMH  RIMHRD+KPAN+ +  +G+VKLGDLGLGR
Sbjct:   84 VDLLKTLKPHPCIIQYIDSFIDNSELYIVFEWAEHGDLRRLLRRANESKTSLQEVQVWRYFVQVCDGIRHMHEARIMHRDIKPANIFLASNGSVKLGDLGLGR 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20322.5261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMU9_ECTSI2.920e-5278.43Putative serine-threonine protein kinase n=1 Tax=E... [more]
A0A6H5KNN9_9PHAE3.710e-4152.70Protein kinase domain-containing protein n=1 Tax=E... [more]
F0Y2C1_AURAN2.320e-2953.92Protein kinase domain-containing protein (Fragment... [more]
A0A7S2C573_9STRA3.590e-2849.02Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1GED1_9STRA1.620e-2750.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482R4P4_9EURY3.020e-2749.02Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A3P6SYQ6_LITSI3.380e-2749.02Protein kinase domain-containing protein n=10 Tax=... [more]
A0A183V1F1_TOXCA4.500e-2749.02Serine/threonine-protein kinase Nek7 n=3 Tax=Ascar... [more]
A0A7S1TSS1_9STRA5.420e-2751.96Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A0M0JFW8_9EUKA7.960e-2749.51Protein kinase 6 n=1 Tax=Chrysochromulina tobinii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20322contigH-paniculata_contig20322:379..4555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue6.2e-43
Seed eggNOG ortholog2880.D7FMU9
KEGG koko:K08857,ko:K20876
KEGG TC1.I.1.1.3
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0591@1,KOG0591@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko03400
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.8706446-CDS-H-paniculata_contig20322:378..5721622929527.8706446-CDS-H-paniculata_contig20322:378..572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20322 379..572 -
1691480899.582945-CDS-H-paniculata_contig20322:378..5721691480899.582945-CDS-H-paniculata_contig20322:378..572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20322 379..572 -
1622929527.8888452-CDS-H-paniculata_contig20322:4440..45551622929527.8888452-CDS-H-paniculata_contig20322:4440..4555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20322 4441..4555 -
1691480899.59612-CDS-H-paniculata_contig20322:4440..45551691480899.59612-CDS-H-paniculata_contig20322:4440..4555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20322 4441..4555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20322.5261.1prot_H-paniculata_contig20322.5261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20322 379..4555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20322.5261.1

>prot_H-paniculata_contig20322.5261.1 ID=prot_H-paniculata_contig20322.5261.1|Name=mRNA_H-paniculata_contig20322.5261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
VGLLKSLQSPNIVRLHTCFLEQSVLWVVMEWVDGGDLKGVLSRTRKASQR
LNELAVWGYFTQICDALLHMHGQRIMHRDLKPANVLVCRDGTVKLGDLGL
GR*
back to top

mRNA from alignment at H-paniculata_contig20322:379..4555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20322.5261.1 ID=mRNA_H-paniculata_contig20322.5261.1|Name=mRNA_H-paniculata_contig20322.5261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4177bp|location=Sequence derived from alignment at H-paniculata_contig20322:379..4555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGGTTATTGAAGAGCCTACAGAGTCCCAACATTGTGAGACTGCACAC
GTGCTTTTTAGAGCAAAGCGTCCTCTGGGTGGTGATGGAGTGGGTTGACG
GGGGTGATCTCAAAGGTGAGACCTGCAGGGACAAAGGACTAGAAGAGCTA
ATAACAGTGTGTCATTGATATTGGTAGCGTGTCGAAGATCCCTTGGCTTG
GGCATATAGTCCCTGAAACACGTTTGAGTCTTGAAATGTTGTGTCTTTGG
GGGGGAATGGGAGGGTTGTTATAGAGTACCCACGGGGTCAAACTCTCCTG
TGTGTTTTCTCCGCTTTTTCGCCGAATATTCCGTCAATTTCGCTCAAAAC
CGTCTACGATCGGTAGATATTGGCATGAGAATAGGTCGTTTATGGAAAAT
ATGTTCCAATTTTGTAATATCGGAACAGTACTTATCAATAAAATTAGGTC
AACACGGGGGAACCCACCAGGATTCTCATTCGTCAGTCAAAACTCTTACC
ATAACTGAGCTCTGAAGCTTAAATAATAACTCCATTATTCCCCATGTCTC
AAGATTATCCAGCTACAACTACAATCTCCGATTGTACTTGTTATTATCCA
CTTACCAACAAATTTATTTTGAAAGAAGGTGGGTGGGGGCCACCTGAGTA
AAACACCTTAAAAAGGGGTATATAAGTTTTGATAAAATGCTCAAGGATGG
AAGCATCGGTAAAGGTTTTTTGCCTCAGCCTTCCGGTGGTTAAAAAAAAA
AACAAGGCGTAAATAATCACCCAACGTCTGTCGAGGACAACGGACAGAGT
TATCCGCGTTATCACATAAAGGGTGGACGTATTCGTGCTTTGCATGATGC
CCTTGCTGTTGTGCCATCGACGACGCATGTAGTCCTCGGGAAGACGGATC
TTTGCTTGTATCTCAAAGTGATTTTCGACAGCTAAAATCGAATCGCTCTT
TCCTACGATTGTTGCCAATTGTGACTTGTCAAACGTGTGTTCCATATACC
CTAGTAGGGGGAGTGAATGTCAATGTACCTGACTTTTCGTGAGGATGCCC
CGGGGCGATTGGCCCTTACGTAGCAGTCTTGCTATTGGATCTCGTTTTGC
GGGCGACCCAGGGGTGAGCTGTAGCTTATGTGGGAGATTTCATGAATCAC
CACGGGACCCCCAAAATGAAGTCACATTTCAAATAAGACTCCCTGAGCGG
TCATGACGCCTCGTGCCTAAAATTCTTGCAAAACCATTCACACGCATCTC
GGGGGTATCATCGTGAGAGCTCCATTTCTGATGGGGGTTGGAAAATAATT
AACCCCTCTCCAGATGACAAAGACTATTTGTGACTATTTAAAGAATAGTT
GCCTGAGTTTCAATATGTGCAGGATGGATAATGACACATAGAACAAAGTA
TTTACCCCCCTGATTTTTTCGTTTTACTGTTAACAGCATATTGGTGAAAT
GGGGACCCAACTTCGAGATGGGGACCCTGGGTTATATTGGAAATAGGCCG
TATCCTGAAGATCCGATATCGATTTTCAGGATACAGCCTATTTCCAATAT
AACCCAGAATCTCCATCTCAAAGTTAGGTCCCCATTTCACCAATATGCTG
TTTGTTGATGGGTTTCGGAGCAGTCAGTCGTAGATGGTTAGTTCGGGGCA
CATGGAGAAAATGTGTGCATTCTGAAACGCAGGTGATTTTTTTTTTTTTT
TTGATAGTCGAAAGTAGTCGTAGTCAGTCGATCGGAGGTGAAGTAGATAG
GAATGAATACTTGGAGGAGCAAGTTAGCAACCAAAAAGAAAAAAAAACGT
TTTTGAGCATTGAGTTATGTGTAACCCAGATGCCTCCGACGATCGACGAC
CAATCCGAATCGTACTTATAGCAGCGATAGGAATAAGCAAAGGGTAAACG
CTTGAATTTTATGTGCCCACAGACTGTGAAACTGGGGCAAACGGTTTTTG
ATTGTTGTCGTACATACGTATTCGAAGAGTTATCCTAGGGTAGGGAAGGA
AGGGAGGGGAGGGGAGGGAGGGGGGGGAGGGGGAGTATTTAACCAAGGCC
GCTTCGCAAAAGAGATGCAAAGATAACGCGAATCGAAACCATGTCGATGG
CATCTGTGTGTGCATGCCTTGGGGTGCATATTCCACGAGTTTGAGGTGGG
ATTTCTGTTTAAGTGAGGGGGGTAACATTAAAATAGAAGTGTCCGACTCC
CTTCTCAAAGCGGCTCCTTCGTTAAACAAAGCGCCTCAAATACTCCCCCC
CCTCCCCTACCTTAGGATGACTCCAACGGATTACGTGTTCGTACTCGTCC
GGGAGGTGAAAGCAGTTGTTTTATGATGGTTACACTAGAGGAATTCAATG
TTAGTATACTCCGTATATGTAAATCACGTATGTACGTACATATGTGTGAA
GCTTTCAACCCCTGGACAAAAACGAATGGATCATTCGCAACTATCTGGAA
CTATCAATATTTGTCTTCGGTAAAAATCTTTTTATTCGTATACAAGTCTG
TGAATGATCACTCTAAAGATGGTCGCCAGGTGGTCGTATAGCCAGCGAAC
AGTCGCATATCCAGGTCCTGTTTATTTTCCGGGTGGTACTGTACAGATTG
AATACTCCGTCTGCCCAAGGTTTTTGATGTTCCATGGGATATCGAGTAGT
AAACTGCATATTATGCGCGTCATATGGACATCTTCCTCAACTCAAACAGA
TAGAGTATTTATTCCAGATTTCTCGTATTCATTCGTGTCTTGTATTTGTA
TTTTTCCGGGTGGGTGGGGGGGGGACTTTTCGGCCAAGGTGGCAAGTTGG
GGTTGACATTGCGAGGATTATCAACATCCTTTTTTTCGGGCGGTGGGGGT
TTAACAATGTAGGATGTATGTCTGTACAACCAGTCATAGGAATTTTCACT
TTTACTGTCATTTTTGTTTTGATAAAATTCGTTCGGTTTCGACATGGCGG
GAGAAAACAATCATATTGAAAAAATAAAAAATAATAGAAGTGCTACTTAG
TCGGAGTTCTTTTCACGTACTGAAAAGGCGACAATCAATCAGTGAAAAAG
TAATGTATAATATCTAGTTTTTTCGCCTCCACCATATTCACCACTTACTG
GTCTTCCCTTCCTTCCCTACACTCCAAAGCATCGGCGACGCACTTTTTTT
TTTTTTTTTTTTTTCAATTGTCTCGTTTTTTTTTTTTTCCCCCTCCTGAA
CGCTTCGTTTATTTCTTCTTGATCATCTCTATATATGTATATATATATAT
ATATATGTGTGTAATAGCATTTTCTTGCAGGCACCGTGTGAGATTAAGGA
TTTGTCCCTCACACTCAATACTTGTGTGAATTATCCCTTTCTTGTATGAG
TATGATGTCATTCTCCACAGCTGAAGTAATTTTTCACCAGGAGTACGGGC
AGGGATAAGCCGATGCTGCCCTCATGTTTCGTCGTTGTTCGTATCCCTTG
ACACCTCCTTGACACACGGAAGAAATCCGCTTCCGCTCGCGATGTAGGCA
CGAGGTGCATGACGCTTCGTTTTGAAGTTTTGGTCAAGTGGATGGAAGCA
TTGTACTTTACACAGTTGAAGATAAAGCAAGGTTCTGAAGTAACCACCAT
TACCTAGACGTATCAAATGGTCAACCGACCCCGCGTTAAGGAGGCAAGTG
GTACGCAAAGCAAAATTGCGCCCTCCATGCGGGGGGGGGTAGCGTTCTGA
TCCCTGCGGGGATGATGATTCCCCATCTCCGGTTCTAATCCCGGTGTTGT
ACTCCAGAGTAATAGGTAGATATCGGCTTCAATCTAGGCTTCTTGGTTAA
AGGGCAACCCGTCCCCGCCTGATAACCAAGGACAGGGAAAAAAACTGACC
GCATTTTTTTGGTATCTCTTATTAGAGACTTGCATGTTTTTTGTTTTGTC
TGTCATCCCTTCTTCTTTTTGCTCGTTTGTTGGTTTATTTGTTACTTGTT
CCTTCGTTCCTTACATTGCGGGGTCGGCGGCAGGCGTGTTATCTAGAACG
CGCAAGGCGAGCCAGCGGCTGAACGAGCTGGCTGTCTGGGGCTACTTCAC
GCAGATATGCGACGCTCTGCTGCATATGCATGGTCAGCGAATCATGCACA
GGGACCTCAAGCCGGCGAATGTCCTCGTGTGTCGTGACGGGACTGTCAAG
CTCGGGGATCTCGGACTCGGCCGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20322:379..4555-

>mRNA_H-paniculata_contig20322.5261.1 ID=mRNA_H-paniculata_contig20322.5261.1|Name=mRNA_H-paniculata_contig20322.5261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig20322:379..4555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGGTTATTGAAGAGCCTACAGAGTCCCAACATTGTGAGACTGCACAC
GTGCTTTTTAGAGCAAAGCGTCCTCTGGGTGGTGATGGAGTGGGTTGACG
GGGGTGATCTCAAAGGTGGGGTTATTGAAGAGCCTACAGAGTCCCAACAT
TGTGAGACTGCACACGTGCTTTTTAGAGCAAAGCGTCCTCTGGGTGGTGA
TGGAGTGGGTTGACGGGGGTGATCTCAAAGGCGTGTTATCTAGAACGCGC
AAGGCGAGCCAGCGGCTGAACGAGCTGGCTGTCTGGGGCTACTTCACGCA
GATATGCGACGCTCTGCTGCATATGCATGGTCAGCGAATCATGCACAGGG
ACCTCAAGCCGGCGAATGTCCTCGTGTGTCGTGACGGGACTGTCAAGCTC
GGGGATCTCGGACTCGGCCGGTGAGCGTGTTATCTAGAACGCGCAAGGCG
AGCCAGCGGCTGAACGAGCTGGCTGTCTGGGGCTACTTCACGCAGATATG
CGACGCTCTGCTGCATATGCATGGTCAGCGAATCATGCACAGGGACCTCA
AGCCGGCGAATGTCCTCGTGTGTCGTGACGGGACTGTCAAGCTCGGGGAT
CTCGGACTCGGCCGGTGA
back to top