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Homology
BLAST of mRNA_H-paniculata_contig2032.5260.1 vs. uniprot
Match: D8LGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY2_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 7.430e-6 Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 2
Query: 293 AVVTGIPTA------YAYVGIPVEAEYVPLLDGTSSSAGHESSAQTNEGVSH---------------QCRKSETER-----------AKIEARLRVDQEARALEIANMQAKRRDSEGLFMRPHPGNSLEPAAAAGL 604
A V G+P A +AYVG+P++ + L S++A +++ G H + K+ R + +A+ RV+++ RA+E A + AKRRD+EGL MRPHPGN LEP A L
Sbjct: 45 AAVEGVPVARATMRPFAYVGVPIDDDNHNELRRPSTAAASYDNSRAGAGRVHGDVSVGVGADYDGAAEAAKASARRDNAAFFEKKRFTEAQAKSRVEEDLRAIETARINAKRRDAEGLDMRPHPGNRLEPEDATPL 180
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-14_001480.1 |
| Exons | 4 |
| Model size | 789 |
| Cds size | 639 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2032.5260.1 >prot_H-paniculata_contig2032.5260.1 ID=prot_H-paniculata_contig2032.5260.1|Name=mRNA_H-paniculata_contig2032.5260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MATYARDPELQAEQSAQQNLRHPVVSSTAGALPYSPSAVVIAAEEEASAV VTGIPTAYAYVGIPVEAEYVPLLDGTSSSAGHESSAQTNEGVSHQCRKSE TERAKIEARLRVDQEARALEIANMQAKRRDSEGLFMRPHPGNSLEPAAAA GLARAGGKLDFYREEKDFWGNQACPTRAAPRGEKDAHHDCAEKERGNDGG GPGGGRESTASGE back to topmRNA from alignment at H-paniculata_contig2032:3257..10311+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2032.5260.1 ID=mRNA_H-paniculata_contig2032.5260.1|Name=mRNA_H-paniculata_contig2032.5260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7055bp|location=Sequence derived from alignment at H-paniculata_contig2032:3257..10311+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GTCAGACAAAGGTTAAACCAAGAGAAGGTTGTAGTACTGACTTTCCGTGT
CTACAGTAGTTCAGCCAAGAGGTCGGTTTTCACCATTGAGGGAGACAGAA
CAAACAGTAAACGGTGCTTGTGTGGTAATAAAGGCGGAGGTGTTTGCAAT
GGCAACATATGCGAGGGATCCTGAGCTTCAAGCCGAGGTGTGATATGTAC
GACACTTGAGACTTGACGTGCGGACAGTTTATATTGTGTTGCAGTATGTG
CTCTAACCTCTCTCTACTCTTGTAGCGCTTACAGCATAGCTCCATAAATA
AAGATTTATATCCCATTAAATTGCCCGCCGGAATACATAGTCGAACGAGC
TTATATGTGTGGTGCTTTCCGCCTGTCCCGCGCCGCTATGATGACTAGAA
TTGTGTCGACAACGGCGTGTGCAAAAACCATCGAATAAAAAACAAACTTG
GACGGGGTGATGTGAGTGCAATTCACCGATCAGGCACGAACACACAGTAC
ATGTTAGTACATATTCAGTTACAGGATGCACACGCTCGTAACCTTTTTTT
TTGCCCAACTATAGTAAGTACACCAATTATATTACGCTGTCTGTCTGTCC
GTGTTCGACTTTACAAAGACTTGAGAGACTTTTCCGTCGAAACAGCATAA
TAAAACAACTGCCGGTGATTCACGGGTGCCGTATCGTATACGGGGGGCAC
AAACTCTTGTTCTCCAAATAAACTTGCTTGGAAGAGCGATATAATTTGTT
GTTGCCTTGCCCTTGCTGCAAAATACGTACGTCCGCGCGCGCACTCAAGA
AAACCCCGCGTTGTGTTCTCTGTGTCTCCTGTCGTCACTTGCGATAGTCG
AGCACATTACCTCATCACCTCAGTAGTCGATCAACCAGGGGCATTTTTCG
AGATATTAACTATTTCACGGCTTCCTTTGTTCGATTTTGGGGGATTGGGC
GTGCACGGGTAGGCGCCATTATTATTACAGTAAATATAATGAACACAAAC
GTTATTTGATAGCGCTATTATAACCCCTCATCCCTTCATCCCTAAAAAGC
GACGACGATCACATATATGTAGATAGCCCGTCGCAACGCCAAATCAGACC
TAGAAGCCACGGGCTTAGTTAATTGTGGTACATACACGAGAGGTAGGTCT
TCCTCTAAGAATACCGTGATACAGCCACCCCTTTTCGTGTTTCAATGTAA
AGAAGCTGTTTCGGAATAGGAAAAGGAACGGACAACAAGATGATGAGGGT
TGCTGCAGCAGTCGTTCGTTCTTTAGTTCTTTGCCAGAAGAAGTACATTC
CAACACTATGTCTCTCTTTGTTATCTCTGTGCTGTCTGGCTGAACAGCGA
TGTGTCCCTATTATCCTCATACTCGGGGCCGTAGGGGGGGGGGGTCACAG
AGCGTCGTTTTCCCCCTGTTTGTGAGGGTATCCATTATTTTGTGCAGATT
GGTTGGTTAGGTCGTCAATTAGATCGGAAGAACTAGCTCTAAAACGGTTG
ATCGTGCCAACACGTGATCGGGGGAAAGGTAGAGAGGAAGGCAAAAAAAT
AACCAAGCTCGTGCAGTGGATGGCTATTAATAGTTTGCCGCTGGTTGGCT
GCAAAACAACCATACACACATGAATAAACGGAAGGATAGGATAGAAAAGG
GGCGATGCCAATAAAATCAATGCACGTACTTCGTAGATATATTCGACAGA
GACGGATGGCCCGTACTTGTAAACAAACAGCCTGGCCTAATGATCGATGG
CATGTCGGCGGGGTCAACGACGAGCAAGAAAGACTTGAGGGGCTTCTTGT
CCCGTTTTCTTTAGTTGTATACACAGTACAGCTAGTTATTATTTTCCTGT
GTATGTTGCTTTCGCGCGCTCGTTCTGACTATCAGTGACTGATCCTGGCG
CTGACGCTCGACCAGGGAACTGGACAGTCAGTGTAACGATACTATAATAT
GACGTGTCAGTATAGGTTACTTAAATAACGGAGAACATTATTTTCCTCCT
CCCCCCTTCCGTCCCCCCCCCCCAAGTTGATGTTGCGTATACTTGTACTC
CAGTCAGTAGTAGCACGTCGGTGGGTTGGGGCTGACGCCGAACTTTCTGT
TTCCCAAGCGTGAGTCAGACACTGGGATTTTTCATATGAAGGGAGGGTCC
CGTACTCACAGGTCAACAGCATAATCGAGAGAGAGGGAGACAGAGACAAA
GAGAGAACAACAAGGAAATAAGTCGACAAGTCTCAGGCTCGAGAGGGACA
GGCTCTAGCTGTATTTATAGCCCGGCAATGAATACATTAATTGATAAATA
CCGCGTGATCCAGTTTTTTTTTTAAATATCCCTCCAGAGTTATAGAAAGA
AACTTCTTGGCTGTTGCTCTGACTCGAATACAAGATGATAAGCGTTGTTT
TGAAGAAATTAATTAATATATTAAGTACTTGAGTGTACACATGTTAGTTT
CACCCGACGCGACAAGGATAAAATGTGTCCCACGAACCCGCAGCGAGCGA
GCTATAGGGTCAAAGTTCCCTTCGTGAGGGTACCCAAGTGCTGAGCTACA
TCAAGGCAGGAAGAGGTGCCTTGAAGGTAAGATGCGAACTGACCGATAAG
GGGCGAGGCACGAGCCTTGCCTCCCTAGGCCTGGAGTCATCACTCGTCAT
CCAGATACTTCAAGTGGACATCACATCAGCTGGACGCATTGTGAGGACGC
AACTTCAACTGGACATGTCATGTATAGGAAAACCTCTCGCACGAAGGATG
GCACATTTTATGAGGATATGAGTATACTGTGGCATGATGGCACTTGTGGG
TTCCTGGCAATAACACATCATTTACCATTTTTGCACGAAAAGACAGCAGT
ACAGCAGTCGGTACTTGAAATATTAAACAGACACTACATTTTAATAGTAG
GCAGCTACGGCGATGCCCGTTCATTTTACCCTCGTACTCGCACCCACCAC
TATCCCAGAAGTTATTATCCAAAGCCCATTAACCGCCGACAATGGCTTGC
TGCGCTTCCATGTAGGCATAAGATCCGTCAAGACCCCTTTTTTTTTAGAA
TTGTCAGTTGAGTGCATACTTTGACAGATTAGTAAAGTAATGTTTTGTAT
TTGAGATATTTTTCCCTCTGACTACGCCGTTTCAGCAAATACAGAAATAG
CCTGCTTCGTCATAAATGATGAAAGAGATGCTGTTACTTGGCTTGAATAT
GTTTACACTGAAAAAACCAAATGATCCTTAAAGGGGGGGGGAGAGAGTCG
TCACTTTCAGCAAATTATATCACTAAGGGATCGTCGCGAACCAAAGAGAA
GGGAATAATCCACTGGCAATTGGAAAATGTCCTTTTACCGTTTCCCGTTG
GAGTAGTGAAAAACCGGCTTCTATGTAAGCGTCACTGGCAATGTACTTGC
GATATGTCTTTTTCCGTGACATGTCCTTCATAATGTTCCTACACGTGGTA
AATTCAAAACAATCGTAAAAGGTATTTTTTCAAATTCGATGTTACGGTGG
AGACATCAATTAGCCAAAGATCGGTATATTGAAAATTGACTCCAAAGTGC
TGTATTTATTTATTTTTTTAATATCCGTCAATTCCAAAATTATTTGACCG
TCGTAGTGTTTGTTGCGTTCCTATCATAATGCGGAGGAGGAGTAGGGGAC
AAAGCGCACTAGAAGGGACTGAACAACTAGAAGAGGGCACACATAGTGTA
TTAAGATTTTTTTTGTTCTGATTATCCTACAGTCAAGATATTAGCGAGTT
TTTTTTTTTTTTTCACCTGTTACGTTTGTTTATCGGGTAGCCTTGCAGGT
GTACGATGGAATTATGATATGAATTGTATGGGAGGTATTGAACAACGGCA
AGTGGGTCGAATTTTGTCAATGCGGCTTGGTAGGTAGATTTGTTGTGTTT
TATTCCTGTCAGGCGTTTACATGTAAACTATGTCCCATTTACGCGTAGCA
CACACGCGAGAGATACAGTGATAACTCTCTTGTGAATCTCCCATCGTGAT
CTAGTTTTGCTGATAAATGCAAGCAACTGAAGTTTGAAGGCAGCTCCATA
ACCTTAACACGGGTACACTGGAGTTATTATGTGAGCTTCAGAGCTATAGT
TCAACCCCCCCCCCCTGCGCGCGCTCCTCAACCCTGTTCAATGATCAATC
AGCAGAGCGCACAGCAGAATCTACGTCATCCCGTGGTTTCCAGCACTGCT
GGTGCACTACCATACTCGCCATCGGCGGTGGTGATCGCAGCAGAAGAAGA
AGCGTCCGCCGTGGTCACAGGGATACCGACGGCCTACGCTTACGTAGGGA
TACCGGTGGAGGCGGAGTACGTGCCTCTGCTCGACGGGACATCCTCTTCC
GCCGGTGGGTCTGTTGCACCCCCTGGACGACTATTTTAAAATTGTGCTCT
GATTTTCAGAAAATGCACTTAGTTTTATTTCATGTACCCCGGAAGGACTC
AGTACGACTGCTCCGAATACTGGTAAAACAGTCAACAATAGGGATGAACA
CTTTGTTCCATCTGTCATAATCCATTCCGTATATTCTGAAATTCCATGTG
TCATCATCCATTCCTCCCTTTCTGAAACTCAGGCGACAAGTTTTGAAAAT
AGTCGAAAATATTCGTACTCGTTCAAGAGTGGTGTATTGTTATCCATGTC
GATCCATATCACTCAGTGTGCGGGGTACTGTAGTGGATAATGACATAGAT
TTTGCCAGTCGATTCGCGTTTTCTGCCATCGCCGAGAAAGGGGACGGGGC
GGGGGCGTCAAAGTGACCAAAGTAAGGGGAGAGAGAGGGATACTTTTTGA
AAGGTATTATGTGACACTTGCTTTGAACAGATTAGTAGAGTAACTCCAAG
TCACACCGATCGCAAGGTTAAGGTAAAGATAAGAAGGGGGCTACTACTGG
CTATTTTGTCTATCGGGTGTAATAATATCTGCGTATATATGTGTATACCT
GATAGAACACAAGAATCACCGCAAACGTTAACTAACGTCTGACTCGCGCA
GCAGTGTAAGTCAATGTATTTGCTCTTTCTGTGTAATGTGTACTTCGAGG
GATGTTTTTTAGTGTGGGTACCTTACTCGTTCACCACGCCGACGTTAAGC
AGCACAGCTCATGCTAGGCTGTAGTTGTATGCACACCCCCCCCCATCAGT
CCGCCCAAACCAAAACAGAAGTCCAGATAAAAGAGGAGGAATGCCGTTGT
ACTCTAGTACACGGTCGTCGTGTAGACGTTCCTGTGGGCAGTTCCATCTA
GTAGTACTACATGCACCATCATCATCCACGTAACTTAGCATCCATGCCGT
CTTGTTCTCTTGTTTGCTCCTCCATGATCAGGACACGAAAGCAGCGCGCA
GACGAACGAAGGCGTGTCGCATCAATGCCGAAAAAGGTTTGTCCACCACA
GGGAGTAAGTACATTAGAGTACCCAGGCAAACAAAGAAGAACAGCGGAAT
GTAGCGATCTATTTACTGTCATTCGGTACCTTACAAAGTACCCAGGCTCC
CAGACAACAACGACAAAAAAACAGGCACTCTCTCACTAACACACACACAC
ACAAAATGTAAAAAAAAAAAAATGTATTGAACTTTTTTGCACTCTTGAAA
ATTGGCACACACATCGGTTGTGTTTGTAAAATGTTGCCTGGTTATATGTA
TCAATCACGCTTGTACAGAAAACAAAGAGCGGTGGCAGCAGAAGCGCTAT
TTCCGCTTCGAAAAATATATTAGTGGAGATAATACTAACATGGATAATAG
CACCCCTTTTTCGATACCCGTTGTCATACCATGCAGAAACAAACCACTGG
ATAATAACTCTTTGGTTGTAATAATGGTTGGATAAAAAAATTATTGTAGA
ATGCTTCCTTCCACCCTCCATTTTCCCCCTGGCTCTTTTCGACTCCCGAC
TCATAGGCTATGTCTGTTCACCGCTCCTCCTCCCGATCTCTCCACTGCAT
TCTCCTATTCCGTCGCCTGATATTCCGTAGACTGCAATAGCACTATTTAG
CAAACGAAACGAAACCGAACGAATCCATTTCTTTGCCACGCAAAATCTGC
CCGCCCGTGCGTGACGAAAGCGAAGCCCCCTCATCTCCTTGACCAAGAAG
ACGACTTGTACCTTCACTAGTTAGTCGTCGCATCTGACTGATAACTTGAC
GATAGTGTATTTTGTTATCTTTTTGGTAATCGCCATGTTTTGCCCCCCCC
CAACCCCCCCCTGATCCCCCCGATCGCGAAGGCTAAAGCTGTTCTAGAAG
ATGGAAATTGTCCTTAACAGGCGAGGATTAGATAGGTTAAGTGACAATTT
TTTTGAGCCACGTTCGGCAACGTAGAAAAGAGCGGTTTTACCATCGGAGA
TCGCTCTGATAGGAACAAAGCTCCATCCTCCCGAGGACGCGTGATCGACG
GTCTAATAACTAACAATTACGACATGCGAAACACAAGTACCCCCCCCCCC
CTCCTTATATTGATCTAGTTTTGCGGATAAGATTATACAATAGATCTTTG
AAGTCAGCTGTTTAACCTTGACATGGTTAATACATAATGGAGTTATTATA
TGAGCTTCATAGCTGTAGTTTAACTGACTGTGCTAGGGTGGACTTGCGAA
CGACAATTCCGTTGAGTGAGGTGAAATGAACGGGTTTTTTTTTCAGAACC
CCTCCACCACCACCCCACCTCCCCGTTTCGAATATAACTTCCCGAACAAA
AACAAACAATAGCGAGACGGAGAGAGCGAAAATCGAAGCGCGTCTTCGTG
TTGACCAGGAGGCTAGGGCGCTCGAAATTGCCAACATGCAGGCTAAGCGA
CGTGACTCGGAGGGCCTTTTCATGCGCCCTCACCCGGGCAACAGCCTTGA
GCCGGCGGCGGCGGCGGGGCTTGCTCGGGCGGGCGGCAAACTAGACTTCT
ACAGAGAAGAAAAGGACTTCTGGGGAAATCAGGCATGTCCTACGCGTGCG
GCCCCACGCGGGGAGAAGGATGCCCACCACGATTGCGCGGAGAAAGAAAG
GGGAAACGATGGCGGTGGACCCGGCGGCGGCAGGGAATCGACCGCTTCGG
GCGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2032:3257..10311+ >mRNA_H-paniculata_contig2032.5260.1 ID=mRNA_H-paniculata_contig2032.5260.1|Name=mRNA_H-paniculata_contig2032.5260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig2032:3257..10311+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCAACATATGCGAGGGATCCTGAGCTTCAAGCCGAGATGGCAACATA TGCGAGGGATCCTGAGCTTCAAGCCGAGCAGAGCGCACAGCAGAATCTAC GTCATCCCGTGGTTTCCAGCACTGCTGGTGCACTACCATACTCGCCATCG GCGGTGGTGATCGCAGCAGAAGAAGAAGCGTCCGCCGTGGTCACAGGGAT ACCGACGGCCTACGCTTACGTAGGGATACCGGTGGAGGCGGAGTACGTGC CTCTGCTCGACGGGACATCCTCTTCCGCCGCAGAGCGCACAGCAGAATCT ACGTCATCCCGTGGTTTCCAGCACTGCTGGTGCACTACCATACTCGCCAT CGGCGGTGGTGATCGCAGCAGAAGAAGAAGCGTCCGCCGTGGTCACAGGG ATACCGACGGCCTACGCTTACGTAGGGATACCGGTGGAGGCGGAGTACGT GCCTCTGCTCGACGGGACATCCTCTTCCGCCGGACACGAAAGCAGCGCGC AGACGAACGAAGGCGTGTCGCATCAATGCCGAAAAAGGACACGAAAGCAG CGCGCAGACGAACGAAGGCGTGTCGCATCAATGCCGAAAAAGCGAGACGG AGAGAGCGAAAATCGAAGCGCGTCTTCGTGTTGACCAGGAGGCTAGGGCG CTCGAAATTGCCAACATGCAGGCTAAGCGACGTGACTCGGAGGGCCTTTT CATGCGCCCTCACCCGGGCAACAGCCTTGAGCCGGCGGCGGCGGCGGGGC TTGCTCGGGCGGGCGGCAAACTAGACTTCTACAGAGAAGAAAAGGACTTC TGGGGAAATCAGGCATGTCCTACGCGTGCGGCCCCACGCGGGGAGAAGGA TGCCCACCACGATTGCGCGGAGAAAGAAAGGGGAAACGATGGCGGTGGAC CCGGCGGCGGCAGGGAATCGACCGCTTCGGGCGAGCGAGACGGAGAGAGC GAAAATCGAAGCGCGTCTTCGTGTTGACCAGGAGGCTAGGGCGCTCGAAA TTGCCAACATGCAGGCTAAGCGACGTGACTCGGAGGGCCTTTTCATGCGC CCTCACCCGGGCAACAGCCTTGAGCCGGCGGCGGCGGCGGGGCTTGCTCG GGCGGGCGGCAAACTAGACTTCTACAGAGAAGAAAAGGACTTCTGGGGAA ATCAGGCATGTCCTACGCGTGCGGCCCCACGCGGGGAGAAGGATGCCCAC CACGATTGCGCGGAGAAAGAAAGGGGAAACGATGGCGGTGGACCCGGCGG CGGCAGGGAATCGACCGCTTCGGGCGAG back to top
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