mRNA_H-paniculata_contig20312.5258.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20312.5258.1
Unique NamemRNA_H-paniculata_contig20312.5258.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20312.5258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20312contigH-paniculata_contig20312:88..2260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size199
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.5984805-CDS-H-paniculata_contig20312:87..2141622929527.5984805-CDS-H-paniculata_contig20312:87..214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20312 88..214 +
1691480899.5039217-CDS-H-paniculata_contig20312:87..2141691480899.5039217-CDS-H-paniculata_contig20312:87..214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20312 88..214 +
1622929527.6156065-CDS-H-paniculata_contig20312:2189..22601622929527.6156065-CDS-H-paniculata_contig20312:2189..2260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20312 2190..2260 +
1691480899.5142126-CDS-H-paniculata_contig20312:2189..22601691480899.5142126-CDS-H-paniculata_contig20312:2189..2260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20312 2190..2260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20312.5258.1prot_H-paniculata_contig20312.5258.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20312 88..2260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20312.5258.1

>prot_H-paniculata_contig20312.5258.1 ID=prot_H-paniculata_contig20312.5258.1|Name=mRNA_H-paniculata_contig20312.5258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
PGDQVEVSSPPARLPLLPSCDIFYGTTGKPLLYPGGRQLFSRGQGHGDRN
PIYEGDGSATVPEPS*
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mRNA from alignment at H-paniculata_contig20312:88..2260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20312.5258.1 ID=mRNA_H-paniculata_contig20312.5258.1|Name=mRNA_H-paniculata_contig20312.5258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2173bp|location=Sequence derived from alignment at H-paniculata_contig20312:88..2260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGGGGATCAAGTCGAGGTGTCTTCTCCTCCGGCTCGACTGCCGCTGCT
TCCTTCCTGCGACATCTTTTATGGAACTACCGGTAAACCACTATTGTATC
CTGGAGGGCGTCAGCTATTCAGTCGAGGTCAGCAAGCCATAGGATATATC
ACATGAACTCCCACATTCCCTGTATACAATAGTTTTACAGCTCCATGCCA
CAAGAGCGAACTTCAATGAGAAGGAGGCAAAGATGGGCAAGGGGCTGTCG
CTTTTATTTCCCTTTTCATCGAGGGTCAGTTCGCTTATCGGAACCAGTAA
CCTCTCGTCGAAGGTGAGAGGGTAATGCTTCGCTTTTCGCCTTATACATA
TCTGAATATCGCAAAAAATTAGGTGGTTTTGGTGTTTCGTTGAGGGGCAA
GGACAAACGATCGCGCGGCGGGAGCAGCAGTCCCACTCGCTCGTCAACTT
TAAAGTTGACGGCGGTATACTACGAGAGTATTTCTCCCTTCCGCATGCAG
TATGGTATGACCAGCATTCAGTGTGTTCCGGCTACTATTAAAAAGTTCAA
TTGTGTATTAAGTACGGTACACTCACTCCCGTACATTATCGTCGACGGTT
CATGTACAGACAGTAGAGTACAACACAGTCAGGGAGGGAGGGGGTGGTCG
TCCTATCGCTGAGGATGTATCATTCGACTTGGGTGTATTCACCTTCCCGG
TGGGGGTGATAACATGTGAGGAAGTAGCATGTCCGCTCGAGAATGATCAC
ACTAGCAAATGGTCGATCACCGTAGTGGCGGTTGTATTGTACCAAATATT
GAAAGGGATTTAGAAGATCCCTAAGGGTTCGTCGTGCCGCGGGAAAAACA
TTTGTGAAGGTTCAGCTGTGTAATCACAGGCTGAGGCTCCCTATATTATT
CGTTTTGAGCCATGACGCTGACCTCTCTCGTCTCGAGTGTAGACGCCATT
ATGACAAGCCGCGTGCTACTACTGAAAGCACCCTCTAACGAAGACGCTTC
AAATATTGTAGCACCACCGAATTAGTGGGCAGAGTCCGGGTAGTGCCTTG
TGGGACCTCACCACAACGCGAAAGATGCCCACGTCAGCAGCAGCACTATC
ATAAGTGTTGCTGGCGGGGTATCATAAGATACCACGATCTGACCCCTGGA
GCCAGGTGCCAGATCGTGGAATCTGATACCCCCGCCAGCGTGCAGCATAC
ATGTTAACCCTGTGGTCGCGATCATCTGTCGCCTTTTCGTGATGGGTCAC
ATGGTGTCATCTGGACTCTCCTTTGTAATTCTTAAAGTCCCGGCTCCTGC
AAATTGCAGCTCTCTCGTTAACGTGCTACACCCACTCATGATCGAGCCTG
CTACGTCAGTATCCCCTGGCCGAAACTGATTCGCTAGCTTCTTCGTTAGC
GGGTACAACGTTTGACCGAGTGCATCGTATTATGCAGTACCATGCCAAAA
CACTCACAACACACAAATCTGGATTGTATACTTTGCATTGAGTAATTGTT
AGGTCATTGATCACGTGTCATCGAAAGGAGGGAGCTCCAAGTCCAAAAGA
GGCGAGGTTAATTTTGCAAGCCATACGCCAATATCAGGGAGAGTGGTAGT
CTGTAATCCCCCACGATTAGTAAGAGAATGAAAACCCGACAACGTTAACA
AGGGGTCGTATGTGAGGGAGTGGAGAATTTTGCTTATCGACAGGGTGTTA
TCTAGTCTAACTAAGGTATTGAGTGTACTATACTGCTGTGCCGAACTGAT
AGACAGGGACTTGCACAGACGTATTGCACACTGCTGTAACCGCCCCCTTT
TATAGCAGGCCCGTCTGTGTTAGCGTACCTACAAGACGAACCGGGGGTTG
TGGGGCTTCACGCTCGTTTGTTCCAAGCCCCGTGCGCAATCGCACTCCCT
TATCCCCGTCGGTCAGACGCGTCATCTTCCTTCGATACTGCAATCATGGA
ATTCATCCTGGGTTATTTTTGCTTGTCACCCAGGACGACAACAGAGGGTC
CAACACACGATATTCGCGTGTTTCACTCTTTTTGGATAATCCCGCATACT
GTAGTTGTCGTGTGTGCTGAAATCATGTTCGTTCTCGTGTTTTTCCTCAT
AGGTCAAGGGCATGGAGATAGAAATCCGATCTATGAAGGGGACGGATCGG
CGACAGTGCCAGAGCCGAGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20312:88..2260+

>mRNA_H-paniculata_contig20312.5258.1 ID=mRNA_H-paniculata_contig20312.5258.1|Name=mRNA_H-paniculata_contig20312.5258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig20312:88..2260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGGGGATCAAGTCGAGGTGTCTTCTCCTCCGGCTCGACTGCCGCTGCT
TCCTTCCTGCGACATCTTTTATGGAACTACCGGTAAACCACTATTGTATC
CTGGAGGGCGTCAGCTATTCAGTCGAGCCTGGGGATCAAGTCGAGGTGTC
TTCTCCTCCGGCTCGACTGCCGCTGCTTCCTTCCTGCGACATCTTTTATG
GAACTACCGGTAAACCACTATTGTATCCTGGAGGGCGTCAGCTATTCAGT
CGAGGTCAAGGGCATGGAGATAGAAATCCGATCTATGAAGGGGACGGATC
GGCGACAGTGCCAGAGCCGAGCTAAGTCAAGGGCATGGAGATAGAAATCC
GATCTATGAAGGGGACGGATCGGCGACAGTGCCAGAGCCGAGCTAA
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