mRNA_H-paniculata_contig20307.5257.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20307.5257.1
Unique NamemRNA_H-paniculata_contig20307.5257.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20307.5257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20307contigH-paniculata_contig20307:3776..4312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20307.5257.1prot_H-paniculata_contig20307.5257.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20307 3794..4120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.4693558-UTR-H-paniculata_contig20307:3775..37931622929527.4693558-UTR-H-paniculata_contig20307:3775..3793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20307 3776..3793 +
1691480899.4734256-UTR-H-paniculata_contig20307:3775..37931691480899.4734256-UTR-H-paniculata_contig20307:3775..3793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20307 3776..3793 +
1622929527.5545926-UTR-H-paniculata_contig20307:4120..43121622929527.5545926-UTR-H-paniculata_contig20307:4120..4312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20307 4121..4312 +
1691480899.4939063-UTR-H-paniculata_contig20307:4120..43121691480899.4939063-UTR-H-paniculata_contig20307:4120..4312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20307 4121..4312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.481128-CDS-H-paniculata_contig20307:3793..41201622929527.481128-CDS-H-paniculata_contig20307:3793..4120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20307 3794..4120 +
1691480899.4845092-CDS-H-paniculata_contig20307:3793..41201691480899.4845092-CDS-H-paniculata_contig20307:3793..4120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20307 3794..4120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20307.5257.1

>prot_H-paniculata_contig20307.5257.1 ID=prot_H-paniculata_contig20307.5257.1|Name=mRNA_H-paniculata_contig20307.5257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MLIPTPAVSSSSLERCARPKWCAINSLTLASLNAVLQLFASVFVPNRSDD
VSHLVPKRKTVRVAAKMTETESILIITCLLRVKTAIKNIKKCGSLLKSTP
RKGTIIGR*
back to top

mRNA from alignment at H-paniculata_contig20307:3776..4312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20307.5257.1 ID=mRNA_H-paniculata_contig20307.5257.1|Name=mRNA_H-paniculata_contig20307.5257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig20307:3776..4312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTACACCATTAGTTACGATGTTAATCCCAACGCCTGCTGTTAGCAGCTC
ATCGCTTGAACGCTGCGCAAGGCCAAAGTGGTGTGCAATAAACTCACTCA
CGCTCGCTAGTCTGAATGCTGTACTCCAACTGTTTGCGTCTGTTTTTGTA
CCAAACCGATCAGATGACGTGTCACATCTGGTGCCAAAACGGAAAACAGT
CAGGGTAGCAGCAAAAATGACGGAAACGGAATCCATTTTAATCATCACAT
GTCTTTTGCGTGTAAAAACAGCGATAAAAAACATTAAAAAATGCGGATCA
CTGTTGAAAAGTACTCCCAGAAAAGGAACAATAATTGGTCGTTGAATCGA
TAGGACTCCTGACAACTGTATCATAAGGTCGTGAGTTCAAATCCGTCCCT
GAAAAAAAAATGCGGGACAAGCGCCGCCGCAAAAATGCCAGGGTCGCAAA
CCTCGCCTGTGGCAGTGTGAAGATGAGTAGCCACACGACGTGAAGGTCAA
ACGTGACACTTGACATCTTCGTCAAGGGGCAAATCAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20307:3776..4312+

>mRNA_H-paniculata_contig20307.5257.1 ID=mRNA_H-paniculata_contig20307.5257.1|Name=mRNA_H-paniculata_contig20307.5257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig20307:3776..4312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAATCCCAACGCCTGCTGTTAGCAGCTCATCGCTTGAACGCTGCGC
AAGGCCAAAGTGGTGTGCAATAAACTCACTCACGCTCGCTAGTCTGAATG
CTGTACTCCAACTGTTTGCGTCTGTTTTTGTACCAAACCGATCAGATGAC
GTGTCACATCTGGTGCCAAAACGGAAAACAGTCAGGGTAGCAGCAAAAAT
GACGGAAACGGAATCCATTTTAATCATCACATGTCTTTTGCGTGTAAAAA
CAGCGATAAAAAACATTAAAAAATGCGGATCACTGTTGAAAAGTACTCCC
AGAAAAGGAACAATAATTGGTCGTTGAATGTTAATCCCAACGCCTGCTGT
TAGCAGCTCATCGCTTGAACGCTGCGCAAGGCCAAAGTGGTGTGCAATAA
ACTCACTCACGCTCGCTAGTCTGAATGCTGTACTCCAACTGTTTGCGTCT
GTTTTTGTACCAAACCGATCAGATGACGTGTCACATCTGGTGCCAAAACG
GAAAACAGTCAGGGTAGCAGCAAAAATGACGGAAACGGAATCCATTTTAA
TCATCACATGTCTTTTGCGTGTAAAAACAGCGATAAAAAACATTAAAAAA
TGCGGATCACTGTTGAAAAGTACTCCCAGAAAAGGAACAATAATTGGTCG
TTGA
back to top