mRNA_H-paniculata_contig20305.5256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20305.5256.1
Unique NamemRNA_H-paniculata_contig20305.5256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: A0A6H5JN95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN95_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 7.720e-20
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 MSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSRCKPKLLGYSDASYCT-----RSTTGTMFFFANGLVHF 378
            M  ANP  TPG   +  +T     QLL     + +QA+ GSL++ TQCTR+D+ ++V Q  R  + P Q H+ A K + RYL+G PD+PI+Y + + +L  ++ +S+ T     RSTTG +FF   GL+++
Sbjct:  377 MEQANPVSTPGYGAE-LSTEQPQVQLLGPEDKQRFQAITGSLLYLTQCTRYDLSYAVHQLTRARANPAQVHMAAPKHLLRYLRGTPDLPIVYKKVQFRLSCFTSSSFGTNPDNGRSTTGYLFFLGGGLINY 506          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: A0A2I0AD25_9ASPA (Putative mitochondrial protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AD25_9ASPA)

HSP 1 Score: 78.2 bits (191), Expect = 4.580e-16
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   97 KEYQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSR-CKPKLLGYSDASYCT-----RSTTGTMFFFANGLV 372
            K Y+ M+GSL++ T  +R DI FSV    R+ S P + HLVAVKRIFRYL G   + + Y +   P L+G+SDA +       +ST+GT  FF N LV
Sbjct:    5 KLYRGMIGSLLYLT-ASRPDIVFSVCMCVRFQSNPKKSHLVAVKRIFRYLVGTHSLGLWYPKGTTPNLIGFSDADFARCKVDRKSTSGTCQFFGNALV 101          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 9.090e-16
Identity = 47/115 (40.87%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   64 EDSQLLDAAATKEYQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSRCKPKLLGYSDASYC-------TRSTTGTMFFFANGLVHFAIT 387
            E++  L+    K YQ +VGSL+F T  TR++I ++V+   R M+ PT QH+V  KR+ RYL+G PD+P+ + R +  L  Y DAS+         RS+TG +F  A G+V  A T
Sbjct:  189 ENAICLNEEDMKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAAST 303          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: A0A2I0AJC7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AJC7_9ASPA)

HSP 1 Score: 75.9 bits (185), Expect = 6.260e-15
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  112 MVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSR-CKPKLLGYSDASY-CT---RSTTGTMFFFANGLV 372
            M+GSL++ T  +R DI FSV   AR+ S P + HLVAVKRIFRYL G   + + YS+   P L+G+SDA   C    +ST+GT  FF N LV
Sbjct:    1 MIGSLLYLT-ASRPDIVFSVCMCARFQSNPKESHLVAVKRIFRYLVGTHSLGLWYSKGTTPNLIGFSDADCRCKVDRKSTSGTCQFFGNALV 91          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: A0A2Z6M0P9_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6M0P9_TRISU)

HSP 1 Score: 78.2 bits (191), Expect = 5.380e-14
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   97 KEYQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSRCKP-KLLGYSDASYC-----TRSTTGTMFFFANGLVHFAITTKST 399
            KEY+ M+GSL++ T  +R DI F+V   AR+ ++P + HL+AVKRIFRYL G PD+ + Y +     L  Y DA Y       +ST+G   FF   LV +  T ++T
Sbjct:  319 KEYRGMIGSLLYLT-ASRPDIVFAVGLCARFQTSPKESHLIAVKRIFRYLVGTPDIGLWYKKGSHFDLQAYCDADYAGDKIERKSTSGACQFFGEALVSWCCTKQNT 424          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: UPI0007EFEF85 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFEF85)

HSP 1 Score: 77.0 bits (188), Expect = 7.770e-14
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  103 YQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSRCKP-KLLGYSDASYC-----TRSTTGTMFFFANGLV 372
            Y+ MVGSL++ T  +R DI F+    AR+ + P + HL+A+KRIFRYL+G P++ I Y R     L+G+SDA Y       +STTGT  F  N LV
Sbjct:  179 YRGMVGSLLYLT-ASRPDIMFATCLCARFQADPRESHLIAIKRIFRYLKGTPNLGIWYPRDSGFDLIGFSDADYAGCRIDRKSTTGTCQFLGNKLV 273          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: A0A6S7GCH6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GCH6_PARCT)

HSP 1 Score: 76.3 bits (186), Expect = 1.670e-13
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  103 YQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSRCKPKLLGYSDASYCT-----RSTTGTMFFFAN 363
            YQ+MVGSLI+    TR DI ++V   A++ S+PT+ HL AVKR+FRYL+G   + + Y      + GYSD  + +     RST+G +F  ++
Sbjct:  191 YQSMVGSLIYLAIATRPDIAYAVAALAKFNSSPTEAHLTAVKRVFRYLKGTAQLRLQYQETDANVEGYSDTDWASDSDDRRSTSGNVFVMSD 282          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: UPI0007EFED75 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFED75)

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-13
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  103 YQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSRCKP-KLLGYSDASYC-----TRSTTGTMFFFANGLV 372
            Y+ MVGSL++ T  +R DI FS    AR+ S P + HL+A+KRIFRYL+G P++ I Y +     L+GYSDA +       +STTGT  F  + L+
Sbjct:  179 YRGMVGSLLYLT-ASRPDIMFSTCLCARFQSDPKESHLIAIKRIFRYLKGTPNLGIWYPKDSGFDLIGYSDADFAGCKIDRKSTTGTCQFLGDRLI 273          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: A0A834FXF1_RHOSS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FXF1_RHOSS)

HSP 1 Score: 75.9 bits (185), Expect = 3.170e-13
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   97 KEYQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSR-CKPKLLGYSDASY--CT---RSTTGTMFFFANGLV 372
            K+Y+ M+GSL++ T  +R DI FSV   AR+ S+P + H +AVKRIF+YL G P++ + Y R     L+GYSDA +  C+   +ST+GT  F  + LV
Sbjct:  382 KKYRGMIGSLLYLT-ASRPDIMFSVCLCARFQSSPKESHHIAVKRIFKYLIGTPNLGLWYPRGTSIDLIGYSDADFAGCSIDRKSTSGTCQFLGHSLV 478          
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Match: UPI000AE657F6 (hypothetical protein n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI000AE657F6)

HSP 1 Score: 71.2 bits (173), Expect = 3.430e-13
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   97 KEYQAMVGSLIFFTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSR-CKPKLLGYSDASYC-----TRSTTGTMFFFANGLV 372
            K+Y+ M+GSL++ T  +R DI FSV   AR+ S P + HL+AVKRIFRYL G  D+ + Y R     L  YSDA +       +ST+GT     + LV
Sbjct:   14 KKYRGMIGSLLYLT-ASRPDIMFSVCLCARFQSCPKESHLLAVKRIFRYLSGTIDLGLWYPRGTHIDLTCYSDADFAGYKVDRKSTSGTCHILGHSLV 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20305.5256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN95_9PHAE7.720e-2038.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A2I0AD25_9ASPA4.580e-1645.92Putative mitochondrial protein n=1 Tax=Apostasia s... [more]
A0A6H5J897_9PHAE9.090e-1640.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2I0AJC7_9ASPA6.260e-1550.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z6M0P9_TRISU5.380e-1442.06Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
UPI0007EFEF857.770e-1445.83uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6S7GCH6_PARCT1.670e-1341.30Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
UPI0007EFED752.000e-1344.79uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A834FXF1_RHOSS3.170e-1344.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000AE657F63.430e-1343.88hypothetical protein n=1 Tax=Acinetobacter baumann... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20305contigH-paniculata_contig20305:735..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.6
Seed ortholog evalue1e-11
Seed eggNOG ortholog13333.ERM98543
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs383NN@33090,3GNHS@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.418148-CDS-H-paniculata_contig20305:734..11751622929527.418148-CDS-H-paniculata_contig20305:734..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20305 735..1175 -
1691480899.4603188-CDS-H-paniculata_contig20305:734..11751691480899.4603188-CDS-H-paniculata_contig20305:734..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20305 735..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20305.5256.1prot_H-paniculata_contig20305.5256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20305 735..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20305.5256.1

>prot_H-paniculata_contig20305.5256.1 ID=prot_H-paniculata_contig20305.5256.1|Name=mRNA_H-paniculata_contig20305.5256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKEYQAMVGSLIFFTQCTR
FDICFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPIMYSRCKPKLL
GYSDASYCTRSTTGTMFFFANGLVHFAITTKSTGVTWRTSWQTFTYP
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mRNA from alignment at H-paniculata_contig20305:735..1175-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20305.5256.1 ID=mRNA_H-paniculata_contig20305.5256.1|Name=mRNA_H-paniculata_contig20305.5256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig20305:735..1175- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCAGCGAATCCCACGAAAACACCTGGAGTTAAAACGGACTCCAC TACTACTACTAGCGAAGACAGTCAACTACTGGATGCAGCAGCTACAAAGG AGTATCAAGCCATGGTAGGGAGCCTCATCTTCTTCACCCAGTGTACAAGA TTCGACATTTGCTTCAGCGTCATCCAAGCGGCACGCTACATGAGCGCACC AACTCAACAGCATCTAGTCGCAGTAAAGCGGATTTTTCGGTATTTACAGG GTCACCCAGATGTGCCCATCATGTACAGCAGATGTAAGCCGAAACTACTA GGCTATTCTGATGCATCATACTGCACACGGTCTACAACAGGCACTATGTT CTTCTTTGCCAACGGATTGGTACACTTCGCAATCACGACGAAATCTACTG GGGTAACATGGCGGACATCGTGGCAGACATTCACGTACCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20305:735..1175-

>mRNA_H-paniculata_contig20305.5256.1 ID=mRNA_H-paniculata_contig20305.5256.1|Name=mRNA_H-paniculata_contig20305.5256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig20305:735..1175- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCAGCGAATCCCACGAAAACACCTGGAGTTAAAACGGACTCCAC
TACTACTACTAGCGAAGACAGTCAACTACTGGATGCAGCAGCTACAAAGG
AGTATCAAGCCATGGTAGGGAGCCTCATCTTCTTCACCCAGTGTACAAGA
TTCGACATTTGCTTCAGCGTCATCCAAGCGGCACGCTACATGAGCGCACC
AACTCAACAGCATCTAGTCGCAGTAAAGCGGATTTTTCGGTATTTACAGG
GTCACCCAGATGTGCCCATCATGTACAGCAGATGTAAGCCGAAACTACTA
GGCTATTCTGATGCATCATACTGCACACGGTCTACAACAGGCACTATGTT
CTTCTTTGCCAACGGATTGGTACACTTCGCAATCACGACGAAATCTACTG
GGGTAACATGGCGGACATCGTGGCAGACATTCACGTACCCGATGTCATCA
GCGAATCCCACGAAAACACCTGGAGTTAAAACGGACTCCACTACTACTAC
TAGCGAAGACAGTCAACTACTGGATGCAGCAGCTACAAAGGAGTATCAAG
CCATGGTAGGGAGCCTCATCTTCTTCACCCAGTGTACAAGATTCGACATT
TGCTTCAGCGTCATCCAAGCGGCACGCTACATGAGCGCACCAACTCAACA
GCATCTAGTCGCAGTAAAGCGGATTTTTCGGTATTTACAGGGTCACCCAG
ATGTGCCCATCATGTACAGCAGATGTAAGCCGAAACTACTAGGCTATTCT
GATGCATCATACTGCACACGGTCTACAACAGGCACTATGTTCTTCTTTGC
CAACGGATTGGTACACTTCGCAATCACGACGAAATCTACTGGGGTAACAT
GGCGGACATCGTGGCAGACATTCACGTACCCG
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