prot_H-paniculata_contig20304.5255.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20304.5255.1
Unique Nameprot_H-paniculata_contig20304.5255.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length68
Homology
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BLAST of mRNA_H-paniculata_contig20304.5255.1 vs. uniprot
Match: D7FSS0_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS0_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 6.090e-6
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 0 
Query:   15 SSSANACLIQDAQ-YSCTPGSTKIDLSGCGITDENIDDLTDCFIFAGQ 61
            S+S N+C   +   Y C PGST+IDL  CGI DE+++DL +CF   G+
Sbjct:   34 STSKNSCFDPEYDLYGCEPGSTQIDLDNCGIGDEDLEDLRECFENVGR 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20304.5255.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSS0_ECTSI6.090e-647.92Hypothetical leucine rich repeat protein (Partial)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..67
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.911

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20304contigH-paniculata_contig20304:2798..4552 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20304.5255.1mRNA_H-paniculata_contig20304.5255.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20304 2593..4552 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20304.5255.1 ID=prot_H-paniculata_contig20304.5255.1|Name=mRNA_H-paniculata_contig20304.5255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MMRAACPLFLLLGLSSSANACLIQDAQYSCTPGSTKIDLSGCGITDENID
DLTDCFIFAGQHLIQEV*
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