mRNA_H-paniculata_contig20304.5255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20304.5255.1
Unique NamemRNA_H-paniculata_contig20304.5255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20304.5255.1 vs. uniprot
Match: D7FSS0_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS0_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.220e-5
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 2 
Query:  248 SSSANACLIQDAQ-YSCTPGSTKIDLSGCGITDENIDDLTDCFIFAGQ 388
            S+S N+C   +   Y C PGST+IDL  CGI DE+++DL +CF   G+
Sbjct:   34 STSKNSCFDPEYDLYGCEPGSTQIDLDNCGIGDEDLEDLRECFENVGR 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20304.5255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSS0_ECTSI5.220e-547.92Hypothetical leucine rich repeat protein (Partial)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20304contigH-paniculata_contig20304:2593..4552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size409
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20304.5255.1prot_H-paniculata_contig20304.5255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20304 2798..4552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.3324006-UTR-H-paniculata_contig20304:2592..27971622929527.3324006-UTR-H-paniculata_contig20304:2592..2797Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20304 2593..2797 +
1691480899.4138942-UTR-H-paniculata_contig20304:2592..27971691480899.4138942-UTR-H-paniculata_contig20304:2592..2797Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20304 2593..2797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.3510427-CDS-H-paniculata_contig20304:2797..28491622929527.3510427-CDS-H-paniculata_contig20304:2797..2849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20304 2798..2849 +
1691480899.4303114-CDS-H-paniculata_contig20304:2797..28491691480899.4303114-CDS-H-paniculata_contig20304:2797..2849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20304 2798..2849 +
1622929527.3649883-CDS-H-paniculata_contig20304:3361..34191622929527.3649883-CDS-H-paniculata_contig20304:3361..3419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20304 3362..3419 +
1691480899.4407542-CDS-H-paniculata_contig20304:3361..34191691480899.4407542-CDS-H-paniculata_contig20304:3361..3419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20304 3362..3419 +
1622929527.376665-CDS-H-paniculata_contig20304:4458..45521622929527.376665-CDS-H-paniculata_contig20304:4458..4552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20304 4459..4552 +
1691480899.4510036-CDS-H-paniculata_contig20304:4458..45521691480899.4510036-CDS-H-paniculata_contig20304:4458..4552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20304 4459..4552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20304.5255.1

>prot_H-paniculata_contig20304.5255.1 ID=prot_H-paniculata_contig20304.5255.1|Name=mRNA_H-paniculata_contig20304.5255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MMRAACPLFLLLGLSSSANACLIQDAQYSCTPGSTKIDLSGCGITDENID
DLTDCFIFAGQHLIQEV*
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mRNA from alignment at H-paniculata_contig20304:2593..4552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20304.5255.1 ID=mRNA_H-paniculata_contig20304.5255.1|Name=mRNA_H-paniculata_contig20304.5255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1960bp|location=Sequence derived from alignment at H-paniculata_contig20304:2593..4552+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAAGCGCCACTTCACGGAGATCTGGTCGTAGGCAGCATCATCGTTAT
CGGGTTGTTGTAATGCGTGCAACAAGGATGAAACCTCTTGCAGGCAGGGT
CTAGGGAATGGGCGCACACCCCCACACATAATTCCAGCACTGCACGCGCA
GATCAGAAGCCTCTTTTCACTTTAGCTTTCTTCAACACCACCTATTCTTC
GTGTCATGATGCGCGCCGCGTGCCCTCTTTTCCTGCTCTTGGGCCTTTCT
TCGAGCGGTGAGTCGTGGAGCTCTAATGTAGGTTCGGATTTGCATTGCAT
CGCGTGAAGTGCGCCGATCGCCAAGTGGAGTTGTCTCTTGTTCCCGTATG
GATCAATCATATACGGTCAGCGATAGAGTGCCGCTAATATCTTCGCTTTG
TGGACTTGAGCAACCATCCAAGCTTTCGTCTTGCTTTGGCGAAGAGCTCT
ACCGTAGGAGTAAACGAATCCATTGAGTTACTGTAGATACAAAAGTTTGA
GCGATCCATGCGATGTAGCGGAGCCATGCGTGTATTCATTATTTTTCTCA
CGCATTCGGCGGGATATCTCGAAAATAGAAATAGATCACGTGGGAGGGTG
ATGTCCATGGGCATTATCCTCGGTCTCGACCAACAAAAAGGATTCCGCGC
AAGTACTTGGGTTGGATCATCTACTCCCATATGCCTTCAATGTTTCGTCC
GCCTTTTCGGTGAGAGTGACGTTTCGTCTGATCCTCCTCGACACCGCGTG
ATTCTTGCCATTTCTTCAGCTAATGCCTGCCTTATCCAAGACGCCCAGTA
CAGCTGCACGCCTGGTTCGACCAAAATGTGAGACATACTGTAATGTATTC
GATGAATCAGCACGTACACACGCTTCTTCGGGCAACCTCACCGGCGCATG
TTTTGCGTCGTAGGGTACACAACTGTCCAAAGGTCGCAGGCGCCGTAATC
AAAGCCCGTGATGCTGCTTGATAATCTCCTGGTTCTCTCTTGGGTTCGGG
GCCTTAAAGCGCTATACATAGCCAGCAGACCGTGGACTTCCGACTTTCTT
GAGCATGTGTTTTTCTTCGTTATGGTGTCCCCTCCCCACTACTCTTTTGT
ATGGTAGGGAGCGATTAAATGCTCGCGGCCGGTAGTTCTGTACACCACGG
CATGACGATGACTGCTGGGCCTCACAACCGTTACAGTCGTGTCTACAACA
TACTGTGCACAGAATTTTGGCAAGTGGAAAAATTGATGTTAGTTCTGTAC
TCACACTCATAAGAGATAATCCCCAATCCTACATATATATGCTATATATG
TATAGCACCGCCGTAGCCGCCTGTCTGGCTATGGAGAAATTCGATTGATG
TCATGCAGCATTGTCATGTTTGGCTTAAGAATATGATAACAGTAGTGTTT
CCCCCGCCAAACGGGGCCGTTTCTTCAATTGACCTAGTATATTCTGACAG
TTTAAACAGACAACATTTGCAGACAGTTTGAACAGTCGGTACGATCAGTT
TGCGGCCATGCCCACGGTGCCTCTCACTTGTGACACATTCCAAGGTACTG
TGCTGACCTCGTTAAGAGAAAAAACTATGTGCTGTGACTTGTCCTCTTTA
GGCATGATCACTGAGGCTGCGTCAGTACCACAGGCAGGTACACTGAAAGC
TGCACGTTGCAACGTGGATTTGGTGGGTTCACACAAGAAAAATGACACTG
CTACGAAAAATGGCACTGCTACGATTAATTGTACTATCCGCCCTGTTATC
AGACGTTAACCGAATGGTCTTAATTTTATTTCTTTGAACATGCAAAGCTT
CGTCTTGATGGAATCTCCCCCACTACCCCGGTCCCTTCTGCCGTGTCGTG
TGCATTCTCCCCACAGCGATCTCAGCGGATGCGGTATTACCGACGAGAAC
ATCGACGATCTGACCGATTGCTTCATCTTCGCCGGACAGCACTTGATCCA
GGAAGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20304:2593..4552+

>mRNA_H-paniculata_contig20304.5255.1 ID=mRNA_H-paniculata_contig20304.5255.1|Name=mRNA_H-paniculata_contig20304.5255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig20304:2593..4552+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCGCGCCGCGTGCCCTCTTTTCCTGCTCTTGGGCCTTTCTTCGAG
CGATGATGCGCGCCGCGTGCCCTCTTTTCCTGCTCTTGGGCCTTTCTTCG
AGCGCTAATGCCTGCCTTATCCAAGACGCCCAGTACAGCTGCACGCCTGG
TTCGACCAAAATCTAATGCCTGCCTTATCCAAGACGCCCAGTACAGCTGC
ACGCCTGGTTCGACCAAAATCGATCTCAGCGGATGCGGTATTACCGACGA
GAACATCGACGATCTGACCGATTGCTTCATCTTCGCCGGACAGCACTTGA
TCCAGGAAGTGTGACGATCTCAGCGGATGCGGTATTACCGACGAGAACAT
CGACGATCTGACCGATTGCTTCATCTTCGCCGGACAGCACTTGATCCAGG
AAGTGTGA
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