mRNA_H-paniculata_contig20304.5254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20304.5254.1
Unique NamemRNA_H-paniculata_contig20304.5254.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20304.5254.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.700e-16
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  278 NDEVSKNLHRNMVASMCTEKILTGQRVRRFSRRTRYYCQAYFELQKGG-DIESKDMIEKTKKKCNAHRNIVNMKPGFINKQ 517
            NDEV K+LH N+  SMC EK LT  RVRRF+RRTR YC+AY E+Q G  D +   ++EK +    AHRNI++M+PGF+ KQ
Sbjct:  304 NDEVPKHLHANIEKSMCREKHLTIGRVRRFARRTRDYCRAYREIQLGAADGQGLQLVEKMRNTQKAHRNILDMEPGFLGKQ 384
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BLAST of mRNA_H-paniculata_contig20304.5254.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.570e-14
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 2 
Query:  278 NDEVSKNLHRNMVASMCTEKILTGQRVRRFSRRTRYYCQAYFELQKGG-DIESKDMIEKTKKKCNAHRNIVNMKPGFINKQ 517
            NDEV K+LH N+  SMC EK LT  RVRRF+RR R YC+AY E Q G  D +   ++EK +    AHRNI++M+PGF+ KQ
Sbjct:  664 NDEVPKHLHANIEKSMCREKHLTIGRVRRFARRKRDYCRAYREKQLGAVDGQGLQLVEKMRDTQKAHRNILDMEPGFLGKQ 744
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BLAST of mRNA_H-paniculata_contig20304.5254.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.690e-13
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  278 NDEVSKNLHRNMVASMCTEKILTGQRVRRFSRRTRYYCQAYFELQKGG-DIESKDMIEKTKKKCNAHRNIVNMKPGFINKQ 517
            NDEV K+LH N+  SM  EK LT  RVRRF+RRTR YC+AY E+Q G  D +   ++EK +    AHRNI++M+PGF+ KQ
Sbjct:  900 NDEVPKHLHANIEKSM--EKHLTIGRVRRFARRTRDYCRAYREIQLGAADGQGLQLVEKMRNTQKAHRNILDMEPGFLGKQ 978
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20304.5254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K769_9PHAE4.700e-1655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE2.570e-1454.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE5.690e-1354.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20304contigH-paniculata_contig20304:823..2452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size699
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20304.5254.1prot_H-paniculata_contig20304.5254.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20304 996..1253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.2508254-UTR-H-paniculata_contig20304:822..9951622929527.2508254-UTR-H-paniculata_contig20304:822..995Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20304 823..995 -
1691480899.3614569-UTR-H-paniculata_contig20304:822..9951691480899.3614569-UTR-H-paniculata_contig20304:822..995Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20304 823..995 -
1622929527.2749856-UTR-H-paniculata_contig20304:1253..13561622929527.2749856-UTR-H-paniculata_contig20304:1253..1356Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20304 1254..1356 -
1691480899.3887572-UTR-H-paniculata_contig20304:1253..13561691480899.3887572-UTR-H-paniculata_contig20304:1253..1356Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20304 1254..1356 -
1622929527.2851157-UTR-H-paniculata_contig20304:2287..24521622929527.2851157-UTR-H-paniculata_contig20304:2287..2452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20304 2288..2452 -
1691480899.3996296-UTR-H-paniculata_contig20304:2287..24521691480899.3996296-UTR-H-paniculata_contig20304:2287..2452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20304 2288..2452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929527.262834-CDS-H-paniculata_contig20304:995..12531622929527.262834-CDS-H-paniculata_contig20304:995..1253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20304 996..1253 -
1691480899.3740807-CDS-H-paniculata_contig20304:995..12531691480899.3740807-CDS-H-paniculata_contig20304:995..1253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20304 996..1253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20304.5254.1

>prot_H-paniculata_contig20304.5254.1 ID=prot_H-paniculata_contig20304.5254.1|Name=mRNA_H-paniculata_contig20304.5254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MLLNDEVSKNLHRNMVASMCTEKILTGQRVRRFSRRTRYYCQAYFELQKG
GDIESKDMIEKTKKKCNAHRNIVNMKPGFINKQYE*
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mRNA from alignment at H-paniculata_contig20304:823..2452-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20304.5254.1 ID=mRNA_H-paniculata_contig20304.5254.1|Name=mRNA_H-paniculata_contig20304.5254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1630bp|location=Sequence derived from alignment at H-paniculata_contig20304:823..2452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTTCGAGGGGCAACTAGTTCCGGTTGGAGACCGGTTGAAACAACGG
ATACACGTTTCCGCAAATGGCGCGTGTAACTTATTGGTAATATATAAAGC
CGACTTTGGGCAATATGTATTACTCATCCCATTATCGCCTACTTTGGGGG
AGAGAAGATTTACAGGTAAATAAACGTGTACAAGCTGGGTCAGCCAAGAT
ACTCACTTGGTTTCAATCGGTCGTAACTTTCTAATCGCAGTGAATTTAAA
CACGTGGAAAGTACTCCTGTAATCGGCAAATCATCGTCTATGAGCAGGCC
AGGTGGCAGTGTGATATTGATGGGCATCTACAAACAAACTGTACTGTCCT
TCGACCACCCATGATGTATAGGTTTATGTCTAAATTGCAGCTAAAACCGT
CAGTTTGTCAATTTTTTGGGGCGGGATAAAAGATTTCCAAATTTTGAGCT
GCAGCACTCCAGCTGTTGGGAGCCCTACACAACGCACAAGCTGCGACATG
GCTCCAAGCTCGCATGGTACCATGCGTTGGCAGAAGACTTCTGCCCCGAG
GATTTATTTCGATCGGCAGAGGGGGAAGTGGAATTTGAAACTGAACTACA
CGTAGAGTACAAAGAAGACGACAAAGGTAAAGCAATCGAAGCTTTTCGAC
ACGCAGGGGGAGGCAGAGGAAACCAGGGGTGGCGGATGAGTTGGGAGCAG
GGGTACCAGGGTACGCAGGTTGACTCGTCCCCTCCTTCAGATCAACAGCG
CAGCTCGATCTCCGCGTCAACGACAAGTTCGGAAGCTGCCAGGTTACCCG
AAGGATAGTTCCATCAGGTTCTACTGCGTTGTCTTGCTATTTTTACTGCT
GTCTGTTTTTGTTTGTACTTCTGTTTGTACTGTTTGTACTTTTGTCTGTA
CTCTGGTCTTTTTGTACTGTTCCTTTGTGCTGTTCCTTTGTGCTGTTGCT
TTGTACTGTCGCTTTGTACTGCTGTCTATACTGCTGTATGCATGGGCTTA
CAGTGCCGTTATGCTGCTACTACGACACGAATGCTATTTGTTCATGTCTT
GACTGCTGTACGCCCCGTCCTCCCTGTTGCTTCCTTTATCCAACAGGAAA
GTCTCACCACAGCTTGCATCGACTGAGCGCCCCACACTAGAGGGCAAGAA
ACATCGTAGGGAAGGGGCGTATGTGACACGTGCGGATTGGATAGCGTCGA
TGCTCCTGAACGACGAGGTGTCGAAAAACCTGCACCGGAACATGGTTGCC
TCGATGTGCACGGAAAAAATCCTAACAGGTCAGCGGGTGCGCCGCTTTTC
GCGCCGCACGCGATACTACTGCCAGGCGTACTTCGAGCTTCAGAAGGGTG
GCGACATCGAGTCCAAAGATATGATCGAGAAGACGAAGAAAAAGTGCAAC
GCTCACCGCAACATCGTTAACATGAAGCCTGGTTTCATCAACAAGCAATA
CGAGTAAGAGAATAACCAGTACCTGTAGTCGTACGACTCGTGTCGGGAGC
AAGCCTACCAGGTGTGGTGTTCGATATTATGTCACAGGATGAGTATGACG
TACGAGTAGAGTGGTGGTTCGTTTCGGACGGTCAACTAGGAACGGTAGCA
CTGTAGATCTAATTTTATTTATCATTCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig20304:823..2452-

>mRNA_H-paniculata_contig20304.5254.1 ID=mRNA_H-paniculata_contig20304.5254.1|Name=mRNA_H-paniculata_contig20304.5254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig20304:823..2452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCTGAACGACGAGGTGTCGAAAAACCTGCACCGGAACATGGTTGC
CTCGATGTGCACGGAAAAAATCCTAACAGGTCAGCGGGTGCGCCGCTTTT
CGCGCCGCACGCGATACTACTGCCAGGCGTACTTCGAGCTTCAGAAGGGT
GGCGACATCGAGTCCAAAGATATGATCGAGAAGACGAAGAAAAAGTGCAA
CGCTCACCGCAACATCGTTAACATGAAGCCTGGTTTCATCAACAAGCAAT
ACGAGTAAATGCTCCTGAACGACGAGGTGTCGAAAAACCTGCACCGGAAC
ATGGTTGCCTCGATGTGCACGGAAAAAATCCTAACAGGTCAGCGGGTGCG
CCGCTTTTCGCGCCGCACGCGATACTACTGCCAGGCGTACTTCGAGCTTC
AGAAGGGTGGCGACATCGAGTCCAAAGATATGATCGAGAAGACGAAGAAA
AAGTGCAACGCTCACCGCAACATCGTTAACATGAAGCCTGGTTTCATCAA
CAAGCAATACGAGTAA
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