mRNA_H-paniculata_contig203.5247.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig203.5247.1
Unique NamemRNA_H-paniculata_contig203.5247.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig203.5247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig203contigH-paniculata_contig203:2230..3304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size460
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929525.967665-CDS-H-paniculata_contig203:2229..23881622929525.967665-CDS-H-paniculata_contig203:2229..2388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig203 2230..2388 +
1691480898.8370848-CDS-H-paniculata_contig203:2229..23881691480898.8370848-CDS-H-paniculata_contig203:2229..2388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig203 2230..2388 +
1622929525.976978-CDS-H-paniculata_contig203:3005..33021622929525.976978-CDS-H-paniculata_contig203:3005..3302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig203 3006..3302 +
1691480898.8474212-CDS-H-paniculata_contig203:3005..33021691480898.8474212-CDS-H-paniculata_contig203:3005..3302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig203 3006..3302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig203.5247.1prot_H-paniculata_contig203.5247.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig203 2230..3302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig203.5247.1

>prot_H-paniculata_contig203.5247.1 ID=prot_H-paniculata_contig203.5247.1|Name=mRNA_H-paniculata_contig203.5247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
EHRQDLDKLEQETTQRVSQLEAATSTLRGELASARGEATVAQKKLEQNAA
EYSEKITAAETEAEELRRKLLQLDADVRALRAARAKLQFENESKLSRIEK
DFSHTEQELSRLLAEKDAALQIYLHEAKEHAERARKDVEGLERNIALQDE
EL
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mRNA from alignment at H-paniculata_contig203:2230..3304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig203.5247.1 ID=mRNA_H-paniculata_contig203.5247.1|Name=mRNA_H-paniculata_contig203.5247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1075bp|location=Sequence derived from alignment at H-paniculata_contig203:2230..3304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATCGGCAAGACCTGGACAAGCTCGAGCAAGAGACAACGCAGCGTGT
TTCACAGCTTGAGGCCGCTACGAGCACGCTGAGAGGGGAGCTGGCTTCGG
CGCGCGGAGAAGCGACGGTGGCGCAGAAAAAGTTGGAGCAGAACGCAGCG
GAATATTCGGTGAGATTAAGTTGAGTCTTCATCTATCTGTCTGTCGGTCG
GTGTATTGGTCGGTAGGTCTTGTCGATTTGTCTGTCCGTTCGTCTGGTGG
TCAGTCAGTAGTTGTGTGTGTGTGAGTATGTATGCGCATGTCTTCGTTTT
GAAATCGGCTTGCTTTGCTTACTGGCTGCTGCTGTGACTTTACCGTTGTT
GGCAGTAGCTTTGTTCACTCTTCGAAAATCATATAAAAAAGTAGAAATTG
CAATAGCATTGCAGTAGTGTCTGTACCCGGGTTATTAATTGCCGACATTT
GCAATATATGTTATACGTGTAAATTCGATGCGAATATATTTTCATTTTCG
TACAAGCTACTACCTAAATAGTCGTCAGCCTATAGTGTGTGTATATATAT
ATATATATATATATATTATAAGCGACTCGAAAGTATTGGGACCAGCAAGC
TCGCCTTCAAAAGAAGAAAACGAAAAACACAAAGATTATTCATGAGTCAA
AACTATTCAATCCCCTGATGTCGTTGGTTTCTGTATTATACTATACCGGT
AGATATATACTATTCTACTTCAGCTACAGCCGTCTCTGTGAAATCGCCCA
TTTGTTCTTTTCTCGCTTTGCTGCAGGAGAAAATCACGGCTGCCGAGACG
GAGGCAGAGGAACTTCGACGAAAACTATTGCAGCTGGACGCCGACGTTCG
CGCTCTCCGCGCAGCGCGAGCGAAACTCCAATTCGAAAACGAGTCGAAGT
TGTCCCGCATAGAGAAAGATTTCTCCCACACAGAGCAGGAGCTCTCTCGC
CTACTCGCCGAAAAAGATGCCGCTCTCCAAATATACCTGCATGAAGCGAA
GGAGCATGCAGAGCGCGCGCGGAAAGATGTCGAGGGACTAGAAAGAAATA
TCGCGTTGCAAGACGAAGAACTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig203:2230..3304+

>mRNA_H-paniculata_contig203.5247.1 ID=mRNA_H-paniculata_contig203.5247.1|Name=mRNA_H-paniculata_contig203.5247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig203:2230..3304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATCGGCAAGACCTGGACAAGCTCGAGCAAGAGACAACGCAGCGTGT
TTCACAGCTTGAGGCCGCTACGAGCACGCTGAGAGGGGAGCTGGCTTCGG
CGCGCGGAGAAGCGACGGTGGCGCAGAAAAAGTTGGAGCAGAACGCAGCG
GAATATTCGGAACATCGGCAAGACCTGGACAAGCTCGAGCAAGAGACAAC
GCAGCGTGTTTCACAGCTTGAGGCCGCTACGAGCACGCTGAGAGGGGAGC
TGGCTTCGGCGCGCGGAGAAGCGACGGTGGCGCAGAAAAAGTTGGAGCAG
AACGCAGCGGAATATTCGGAGAAAATCACGGCTGCCGAGACGGAGGCAGA
GGAACTTCGACGAAAACTATTGCAGCTGGACGCCGACGTTCGCGCTCTCC
GCGCAGCGCGAGCGAAACTCCAATTCGAAAACGAGTCGAAGTTGTCCCGC
ATAGAGAAAGATTTCTCCCACACAGAGCAGGAGCTCTCTCGCCTACTCGC
CGAAAAAGATGCCGCTCTCCAAATATACCTGCATGAAGCGAAGGAGCATG
CAGAGCGCGCGCGGAAAGATGTCGAGGGACTAGAAAGAAATATCGCGTTG
CAAGACGAAGAACTGGAGAAAATCACGGCTGCCGAGACGGAGGCAGAGGA
ACTTCGACGAAAACTATTGCAGCTGGACGCCGACGTTCGCGCTCTCCGCG
CAGCGCGAGCGAAACTCCAATTCGAAAACGAGTCGAAGTTGTCCCGCATA
GAGAAAGATTTCTCCCACACAGAGCAGGAGCTCTCTCGCCTACTCGCCGA
AAAAGATGCCGCTCTCCAAATATACCTGCATGAAGCGAAGGAGCATGCAG
AGCGCGCGCGGAAAGATGTCGAGGGACTAGAAAGAAATATCGCGTTGCAA
GACGAAGAACTG
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