mRNA_H-paniculata_contig20252.5238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20252.5238.1
Unique NamemRNA_H-paniculata_contig20252.5238.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: D7G902_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G902_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 7.380e-48
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:    1 KARQANEKIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEASGGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHAA 321
            KARQAN KIAQQLQER +EN RV+GQL QLA+SVKVREAI+R+HME+SGGEINPAQQ+   AGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHAA
Sbjct:  288 KARQANAKIAQQLQEREDENRRVNGQLGQLATSVKVREAIFRSHMESSGGEINPAQQS---AGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHAA 391
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A7S2SEN3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEN3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.760e-32
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    1 KARQANEKIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEASGGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHAA 321
            K R +  KIA  ++ER EEN R+  QL +L SSV VRE+IYR+ ++++GG+ NPAQQA   A RMKR+T RRRL+DLAR QT EI+ L+ ELDRLRQRTFPSFAHAA
Sbjct:   17 KVRGSVNKIAFNIKERREENERLKEQLKELQSSVNVRESIYRSRVDSNGGDANPAQQA---AKRMKRVTMRRRLIDLARVQTEEIDYLRQELDRLRQRTFPSFAHAA 120
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A7S2CAS4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAS4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.030e-28
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:   22 KIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEASGGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHAA 321
            K++Q ++ER  EN R+  QL  L  SV+VREAIYR+ +++SGGE+NP QQA   A RMKRIT RRRL+DLAR QT EI+ L++ELDRLRQRTFPSFAHAA
Sbjct:  698 KLSQSVRERRSENERLVVQLKDLDGSVQVREAIYRSRVDSSGGEVNPMQQA---ATRMKRITMRRRLIDLARVQTEEIDFLRSELDRLRQRTFPSFAHAA 794
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A7S1UCA8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCA8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.830e-25
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:   10 QANEKIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEASGGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHA 318
            Q   K+  QL++RT EN R+  QL +L ++V VRE IYR+ +E+SGG+  P   A   A RMKRIT RRRLVD+ARAQT EI+ L+ ELDRLRQRTFPSFAHA
Sbjct: 1301 QQTRKLGAQLRDRTTENARLLRQLRELETAVSVREGIYRSRLESSGGDATPEAMA---ATRMKRITVRRRLVDIARAQTDEIDYLRNELDRLRQRTFPSFAHA 1400
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A7S4DB68_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB68_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 7.180e-22
Identity = 62/113 (54.87%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:    1 KARQANEKIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHME------ASGGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHAA 321
            K + AN +   Q++ER  EN R+  Q  +L  SV VR +I+R   +      A+GG    A QA+    RMKRIT RRRL+DLARAQT EIEAL+ ELDRLRQRTFPSFAHAA
Sbjct:  130 KLQAANARALGQVREREAENERLRAQYDELERSVAVRRSIHRTRADGATAPGATGGTA-AAAQAQXXXXRMKRITLRRRLIDLARAQTEEIEALRLELDRLRQRTFPSFAHAA 241
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A8J2WXW7_9STRA (Cilia- and flagella-associated protein 43 n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXW7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.480e-19
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   16 NEKIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEASGGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHA 318
            N K+ QQ+Q R +EN R+  QL Q+  ++ VREAI R+ + +   E N  Q+ R     MKRIT RRRL+DLA+ QT E+E L+ ELDRLRQRTFPSF HA
Sbjct: 1478 NSKLVQQIQAREDENKRLHLQLNQINDAIIVREAITRSQLNSFTEEANAEQRTRY---HMKRITLRRRLIDLAKLQTEEVEFLRQELDRLRQRTFPSFGHA 1575
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A835YXJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.100e-18
Identity = 54/88 (61.36%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   76 QLVQLASSVKVREAIYRN------HMEASGGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHAA 321
            QL  L  +V+ REAI          +EA GG I+PA +A   A +MKR+TTRRRL+DLARAQT EIE+LK ELD LRQRTFPSFAHAA
Sbjct: 1982 QLDDLHEAVEAREAIXXXXXXXXXRVEALGGLIDPATRA---ADKMKRVTTRRRLIDLARAQTDEIESLKQELDALRQRTFPSFAHAA 2066
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A3F2RUE6_9STRA (Cilia- and flagella-associated protein 43 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUE6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.900e-16
Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 KARQANEKIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEAS-------GGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFAHA 318
            K  +   ++ +QL+ER  EN     Q+ QLA+ V++RE I  +   A+       GG +      RG A R+K I+ RR+LVDLA+AQT EIE L+ ELD++R+RTFPSFAHA
Sbjct: 1454 KLERTGNQLERQLRERERENRNFQQQVAQLATQVQIREDILTSRTSAAIRQQTAEGGAV------RGNAARLKAISVRRKLVDLAKAQTDEIEYLRLELDKMRRRTFPSFAHA 1560
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A6H5KRL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.440e-15
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:   13 ANEKIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEASGGEINPAQQ 171
            AN KIAQQLQER +EN RV+GQL QLA+SVKVREAI+R+HME+SGG+INPAQQ
Sbjct:  640 ANAKIAQQLQEREDENRRVNGQLGQLATSVKVREAIFRSHMESSGGDINPAQQ 692
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BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Match: A0A0P1B4M1_PLAHL (Cilia- and flagella-associated protein 43 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4M1_PLAHL)

HSP 1 Score: 79.3 bits (194), Expect = 5.230e-15
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:   34 QLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEASGGEINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTFPSFA 312
            QL+ER  EN ++  Q+ QL + VK+RE I  +   A+  +      AR  A R+K I  RR+LVDLA+AQT EIE L++ELD++R+RTFPSFA
Sbjct: 1716 QLRERERENDKLEQQVTQLTTQVKIREDILTSRTSAAKRQQAAGGGARKDATRLKAIAVRRKLVDLAKAQTNEIEYLRSELDKMRRRTFPSFA 1808
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20252.5238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G902_ECTSI7.380e-4886.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SEN3_9STRA6.760e-3262.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CAS4_9STRA4.030e-2865.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1UCA8_9STRA2.830e-2560.19Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4DB68_HETAK7.180e-2254.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2WXW7_9STRA2.480e-1953.47Cilia- and flagella-associated protein 43 n=4 Tax=... [more]
A0A835YXJ9_9STRA4.100e-1861.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3F2RUE6_9STRA5.900e-1645.13Cilia- and flagella-associated protein 43 n=4 Tax=... [more]
A0A6H5KRL2_9PHAE1.440e-1579.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1B4M1_PLAHL5.230e-1549.46Cilia- and flagella-associated protein 43 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20252contigH-paniculata_contig20252:2927..3581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue7.3e-39
Seed eggNOG ortholog2880.D7G902
Preferred nameCFAP43
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0006469,GO:0008150,GO:0009892,GO:0009966,GO:0009968,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0023051,GO:0023057,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0042325,GO:0042326,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043549,GO:0044092,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0060548,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:1902041,GO:1902042,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG OGs2CME1@1,2QQ39@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-15_002430.2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929524.449507-CDS-H-paniculata_contig20252:2926..31061622929524.449507-CDS-H-paniculata_contig20252:2926..3106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 2927..3106 +
1691480898.067743-CDS-H-paniculata_contig20252:2926..31061691480898.067743-CDS-H-paniculata_contig20252:2926..3106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 2927..3106 +
1622929524.4705653-CDS-H-paniculata_contig20252:3440..35811622929524.4705653-CDS-H-paniculata_contig20252:3440..3581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 3441..3581 +
1691480898.07972-CDS-H-paniculata_contig20252:3440..35811691480898.07972-CDS-H-paniculata_contig20252:3440..3581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20252 3441..3581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20252.5238.1prot_H-paniculata_contig20252.5238.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20252 2927..3581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20252.5238.1

>prot_H-paniculata_contig20252.5238.1 ID=prot_H-paniculata_contig20252.5238.1|Name=mRNA_H-paniculata_contig20252.5238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
KARQANEKIAQQLQERTEENWRVSGQLVQLASSVKVREAIYRNHMEASGG
EINPAQQARGAAGRMKRITTRRRLVDLARAQTGEIEALKAELDRLRQRTF
PSFAHAA
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mRNA from alignment at H-paniculata_contig20252:2927..3581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20252.5238.1 ID=mRNA_H-paniculata_contig20252.5238.1|Name=mRNA_H-paniculata_contig20252.5238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=655bp|location=Sequence derived from alignment at H-paniculata_contig20252:2927..3581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCCAGGCAGGCGAACGAAAAGATTGCGCAGCAGCTGCAGGAACGCAC
GGAGGAGAACTGGCGAGTGTCTGGTCAGTTGGTACAGCTGGCCAGCAGTG
TCAAGGTTCGCGAGGCTATCTATCGGAATCATATGGAAGCCTCCGGTGGA
GAGATAAACCCGGCACAGCAGGCAAGAGGAGTCAGTTCAACGATGGATGA
GGGGGAAGTAGATTACAACAAGAAACATGTATTGGCATGTTCAACTATTA
TAGCGTCGCTCGTATGAAATTTTGGGCGAGCTCAGTGAACAAAGAACCAT
CCACATATAACATGTGTTTACTACCCAGCGAAATGCGACGGATGACATCG
TCGTCCGAGAATAACGTGGTGCACCTATAGATCGACTGCTTGTTGAAGTA
TTTTGCTCGTTCTGATGGGAAACTATTGGTGATTCCGTCGAACGAGGGTA
ACCTAAATGGCAGTATATGACTGTTATGCGCATCGTTCACCCTTTTGACT
GTGAAAAAGAACAGGCTGCCGGACGGATGAAGCGCATCACCACTAGGCGG
CGACTAGTCGACCTAGCCCGGGCGCAGACGGGGGAGATCGAGGCGTTGAA
GGCAGAGCTCGATCGTCTCCGGCAGAGAACATTCCCCAGTTTTGCTCATG
CAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20252:2927..3581+

>mRNA_H-paniculata_contig20252.5238.1 ID=mRNA_H-paniculata_contig20252.5238.1|Name=mRNA_H-paniculata_contig20252.5238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig20252:2927..3581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCCAGGCAGGCGAACGAAAAGATTGCGCAGCAGCTGCAGGAACGCAC
GGAGGAGAACTGGCGAGTGTCTGGTCAGTTGGTACAGCTGGCCAGCAGTG
TCAAGGTTCGCGAGGCTATCTATCGGAATCATATGGAAGCCTCCGGTGGA
GAGATAAACCCGGCACAGCAGGCAAGAGGAAAGGCCAGGCAGGCGAACGA
AAAGATTGCGCAGCAGCTGCAGGAACGCACGGAGGAGAACTGGCGAGTGT
CTGGTCAGTTGGTACAGCTGGCCAGCAGTGTCAAGGTTCGCGAGGCTATC
TATCGGAATCATATGGAAGCCTCCGGTGGAGAGATAAACCCGGCACAGCA
GGCAAGAGGAGCTGCCGGACGGATGAAGCGCATCACCACTAGGCGGCGAC
TAGTCGACCTAGCCCGGGCGCAGACGGGGGAGATCGAGGCGTTGAAGGCA
GAGCTCGATCGTCTCCGGCAGAGAACATTCCCCAGTTTTGCTCATGCAGC
GGCTGCCGGACGGATGAAGCGCATCACCACTAGGCGGCGACTAGTCGACC
TAGCCCGGGCGCAGACGGGGGAGATCGAGGCGTTGAAGGCAGAGCTCGAT
CGTCTCCGGCAGAGAACATTCCCCAGTTTTGCTCATGCAGCG
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