mRNA_H-paniculata_contig1081.523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1081.523.1
Unique NamemRNA_H-paniculata_contig1081.523.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1081.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1081contigH-paniculata_contig1081:11920..15214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1827
Cds size1824
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1081.523.1prot_H-paniculata_contig1081.523.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1081 11922..15214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928786.027403-CDS-H-paniculata_contig1081:11921..125661622928786.027403-CDS-H-paniculata_contig1081:11921..12566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1081 11922..12566 -
1691480619.2620783-CDS-H-paniculata_contig1081:11921..125661691480619.2620783-CDS-H-paniculata_contig1081:11921..12566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1081 11922..12566 -
1622928786.0425622-CDS-H-paniculata_contig1081:12886..131241622928786.0425622-CDS-H-paniculata_contig1081:12886..13124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1081 12887..13124 -
1691480619.27421-CDS-H-paniculata_contig1081:12886..131241691480619.27421-CDS-H-paniculata_contig1081:12886..13124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1081 12887..13124 -
1622928786.0532691-CDS-H-paniculata_contig1081:14273..152141622928786.0532691-CDS-H-paniculata_contig1081:14273..15214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1081 14274..15214 -
1691480619.2842538-CDS-H-paniculata_contig1081:14273..152141691480619.2842538-CDS-H-paniculata_contig1081:14273..15214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1081 14274..15214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1081.523.1

>prot_H-paniculata_contig1081.523.1 ID=prot_H-paniculata_contig1081.523.1|Name=mRNA_H-paniculata_contig1081.523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=608bp
PVSTAVDTRTSTAATTASPSSRLGAAAANGGAIITNPSTVSRSPAGIYRA
QVSSSSSPKPPAPATTMTATPPMLFKPIRSGPVFPITVLLPPSTPQNSAS
QPQAIASPARHHPSPSNNPTTAPTRTTTTVDVEPTIAQPPMLAAAAPRGT
SQGASLGAVLMNSSFQAAGVMEPDAAVVPPRYHFWSKSFATSFAASSGAA
SGAARAGLVVAPDDGKPSEAKPAGAAQELAGGLSTQESSDAVAVAKANGG
VDEMEVDDDGGGSAGAASSPTQSLAQVIPMNTVGLRADEIGDRDSKKDGP
DDKPEMPPLKPQKRSKMLPAGYLSYFDGCGKANARTGVDGLSLEYRRVNA
GSSEVCAVEAAVLAARAAAATPWISDRWRLSEDQVDEDLAMLKLLVGIAS
EETPAASVAVSSTITNHETPSSSKAGGRSTPPTTTPTPPLSGSQYGPHAS
EEGTSSTPSTPASSPSGTAGPAPSSAANVGNLVASPKSPSTVDPSAVSGG
GSSGWKGKGPLVPKGSSSSSKLVASSLPKAQEYVAGSGVGDGAADGGGAV
ASTRADEEGGYASVVIDVDGKENASMASKASGSDANDEARGRGSRGSAGG
LAAGAMAG
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mRNA from alignment at H-paniculata_contig1081:11920..15214-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1081.523.1 ID=mRNA_H-paniculata_contig1081.523.1|Name=mRNA_H-paniculata_contig1081.523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3295bp|location=Sequence derived from alignment at H-paniculata_contig1081:11920..15214- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGTTAGCACTGCGGTAGACACGAGGACCTCTACTGCGGCCACCACGGC
GAGCCCTTCGTCGCGGCTCGGCGCCGCCGCTGCTAATGGGGGCGCAATAA
TCACGAATCCCTCAACCGTCTCCAGGAGCCCTGCAGGGATCTACAGGGCC
CAGGTATCATCATCCTCTTCGCCGAAGCCGCCGGCACCGGCGACAACCAT
GACCGCCACCCCGCCCATGCTCTTCAAACCGATACGCAGCGGCCCAGTAT
TTCCCATAACGGTATTACTCCCGCCTTCTACCCCCCAAAACTCCGCCTCT
CAGCCGCAAGCGATCGCAAGCCCGGCGCGTCACCACCCCTCCCCATCTAA
TAATCCAACCACAGCACCAACGAGGACGACGACGACTGTTGATGTTGAGC
CGACGATCGCCCAACCTCCGATGTTGGCGGCGGCGGCACCGCGCGGTACG
TCGCAGGGTGCATCTCTAGGTGCAGTGCTTATGAATTCCTCGTTCCAGGC
CGCGGGAGTGATGGAGCCTGATGCCGCCGTAGTGCCTCCACGCTATCACT
TCTGGAGTAAAAGTTTTGCGACTTCTTTTGCTGCTTCTTCCGGAGCTGCT
TCAGGAGCTGCACGTGCGGGCTTGGTGGTTGCACCCGACGACGGCAAGCC
AAGCGAGGCGAAGCCTGCAGGAGCTGCGCAAGAGCTAGCTGGAGGGCTGT
CTACTCAAGAATCCTCTGACGCTGTGGCAGTGGCAAAGGCAAACGGCGGC
GTCGATGAAATGGAGGTTGATGACGATGGTGGAGGTTCTGCTGGTGCTGC
ATCATCGCCTACCCAGAGTTTGGCCCAGGTGATCCCGATGAACACAGTTG
GTTTGAGAGCAGACGAGATTGGCGACAGGGATTCGAAAAAGGATGGGCCC
GACGACAAGCCGGAAATGCCACCGCTCAAGCCCCAGAAGAGGCAAGTGTT
GGCACTCGAAGAGAGAAAGAACCATTGACCTACATTAGGAGAAATCTTCG
GGGGTGAAGACGGGGTGTCGCATGTTGTTTTGTGGCGAAACAGGCATGTA
TTTACTGTACAGATTTACTGTAGATAAATTGGCAGGTATTCGTTTAGTAA
AATCCTGAGTTTTTGAGGTTTGTTACAGTAGTTTTTCAGCGGGAATTTTT
TGGAGGTTCCGCTTGTTGCGGCAGAATACGTTCCTGAAAAAGTGTTGCCG
AAACGAAACCTCGTGGAGTGCGGGATTGTACTGTATACTCTCTATATATT
GTATGCCGAGTCTTTGTTTATGATCACTTCTATCTCTCGAAGATATTTCT
CGTGTTCTAGAGGTTCGTCGTTCATCCCCCCGCATATTGAATTTCTCCTT
CGGTTTTGTCGGGACCAGGAGCCCTCAATGTCTCATATACGAACTCCACT
GTCTTCAGTATCTGTGTACTCCACCTTATAGAAATAATACACGTAAAGTG
CATTGTAGCACAGTTTTAATTACTCCGCATCACGCCTCCATGTTTTAGCC
GAACCATTCCCCAAGATCCAAAACTGGCACGCATGCCCGCCTCCTCTTGT
GCTGAGCTATCATAGCTCAACATGATGCTAAATACTCTATTTACTGTTGC
ATAATGTCGCACATGCACCCACCCAGAAGACTTGTAACACGACTTGTCGT
GAAGAATTGATAAGTGTCGGGAAAGTATAAGTTTGCTATTTTTGCTGGAC
ATTGTACATGCCGTAGAGCGCTCTCAAAATGCCTTTCCCTCCAGGTGATT
TTTTTTTCAGGCCCAATTTCGAAAATGAAATCCACCTGCGTTAGAAAAGA
GCAGGCCTATCTAATGACAGTTGAAGTATTTTCATGGACACAATTTTCGA
TATCAAAAACACCATAGTTTCGATAAAATCGGGGCTTGAAAAAAATCGTG
AAGTCATCCCCAGGGCGTTCTGACAGTGCTCTACGCTAGATATGAATTTG
GTTGCTTTAATGTAGTACTTAGCCTCGACGTGCCACATCTCACGCTTCAT
GTTTTTTTTTTCATGTCCACCTGCGAGCAAACGACCTGATTTGTGCTCTG
TACCCGGTATATTTGTATCTTTCGTGCGAACCGACAACAGATCGAAGATG
TTACCTGCTGGTTATCTAAGCTATTTTGATGGCTGTGGCAAGGCGAACGC
ACGAACTGGCGTCGACGGATTATCTCTGGAATATAGGCGCGTAAACGCGG
GCTCGTCAGAAGTTTGTGCGGTGGAAGCAGCTGTTCTTGCAGCGAGGGCT
GCTGCAGCCACACCTTGGATTAGTGACCGGTGGCGTCTGAGCGAAGATCA
AGTTGACGAAGACTTGGCGATGCTCAAGGCAAGTCTTGAGTTGACTATTT
TTCGACAACAAGTATATGTATATATATATATATATACTTGTATGGTTTCC
ATACTTGTACGGCTTCCATACTTTCCCAAATATGTATATATATATATATA
TATATATATATCCTTTTTCATGTTTCCTGCCAGCAGTATATTGTCGTTGC
CAGAATTTCCACTTGTGATATGAGTAGATGTAATGAATTCACTTGATGAC
AAAAATACAAACAGCACTGCTTTCTATCTTCATCCCAACCCTGCCGCAAA
TGCCTCCCTCTCCTCGCGGTTTGTATTACCACTATCCTTTATTAACAGTT
ACTGGTTGGCATCGCAAGCGAGGAAACCCCTGCCGCCTCCGTAGCAGTGT
CAAGTACTATTACAAATCACGAGACCCCGTCATCATCCAAAGCGGGGGGC
CGTTCGACTCCGCCGACAACGACCCCAACGCCGCCGCTGTCTGGCTCTCA
GTACGGACCCCATGCAAGCGAGGAAGGCACAAGCTCCACCCCTAGCACAC
CAGCATCATCACCATCAGGTACGGCAGGACCTGCTCCATCGTCTGCCGCT
AATGTGGGCAATTTAGTTGCTAGTCCAAAGTCCCCCTCCACCGTGGACCC
CTCCGCCGTTTCAGGTGGTGGTTCGAGCGGCTGGAAGGGGAAGGGACCCT
TGGTACCCAAGGGCAGTAGTAGTAGTAGTAAGCTTGTCGCTTCATCGCTG
CCGAAAGCACAGGAATATGTTGCCGGGTCTGGGGTTGGGGACGGAGCTGC
TGATGGTGGTGGTGCTGTCGCATCTACTAGAGCGGATGAAGAGGGAGGAT
ACGCGAGTGTGGTGATAGACGTTGACGGGAAGGAAAACGCGTCCATGGCG
TCGAAGGCGAGCGGTAGCGACGCGAACGATGAAGCGCGAGGCAGAGGCAG
CAGAGGTAGTGCTGGGGGATTAGCGGCAGGGGCAATGGCCGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1081:11920..15214-

>mRNA_H-paniculata_contig1081.523.1 ID=mRNA_H-paniculata_contig1081.523.1|Name=mRNA_H-paniculata_contig1081.523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3648bp|location=Sequence derived from alignment at H-paniculata_contig1081:11920..15214- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGTTAGCACTGCGGTAGACACGAGGACCTCTACTGCGGCCACCACGGC
GAGCCCTTCGTCGCGGCTCGGCGCCGCCGCTGCTAATGGGGGCGCAATAA
TCACGAATCCCTCAACCGTCTCCAGGAGCCCTGCAGGGATCTACAGGGCC
CAGGTATCATCATCCTCTTCGCCGAAGCCGCCGGCACCGGCGACAACCAT
GACCGCCACCCCGCCCATGCTCTTCAAACCGATACGCAGCGGCCCAGTAT
TTCCCATAACGGTATTACTCCCGCCTTCTACCCCCCAAAACTCCGCCTCT
CAGCCGCAAGCGATCGCAAGCCCGGCGCGTCACCACCCCTCCCCATCTAA
TAATCCAACCACAGCACCAACGAGGACGACGACGACTGTTGATGTTGAGC
CGACGATCGCCCAACCTCCGATGTTGGCGGCGGCGGCACCGCGCGGTACG
TCGCAGGGTGCATCTCTAGGTGCAGTGCTTATGAATTCCTCGTTCCAGGC
CGCGGGAGTGATGGAGCCTGATGCCGCCGTAGTGCCTCCACGCTATCACT
TCTGGAGTAAAAGTTTTGCGACTTCTTTTGCTGCTTCTTCCGGAGCTGCT
TCAGGAGCTGCACGTGCGGGCTTGGTGGTTGCACCCGACGACGGCAAGCC
AAGCGAGGCGAAGCCTGCAGGAGCTGCGCAAGAGCTAGCTGGAGGGCTGT
CTACTCAAGAATCCTCTGACGCTGTGGCAGTGGCAAAGGCAAACGGCGGC
GTCGATGAAATGGAGGTTGATGACGATGGTGGAGGTTCTGCTGGTGCTGC
ATCATCGCCTACCCAGAGTTTGGCCCAGGTGATCCCGATGAACACAGTTG
GTTTGAGAGCAGACGAGATTGGCGACAGGGATTCGAAAAAGGATGGGCCC
GACGACAAGCCGGAAATGCCACCGCTCAAGCCCCAGAAGAGCCGGTTAGC
ACTGCGGTAGACACGAGGACCTCTACTGCGGCCACCACGGCGAGCCCTTC
GTCGCGGCTCGGCGCCGCCGCTGCTAATGGGGGCGCAATAATCACGAATC
CCTCAACCGTCTCCAGGAGCCCTGCAGGGATCTACAGGGCCCAGGTATCA
TCATCCTCTTCGCCGAAGCCGCCGGCACCGGCGACAACCATGACCGCCAC
CCCGCCCATGCTCTTCAAACCGATACGCAGCGGCCCAGTATTTCCCATAA
CGGTATTACTCCCGCCTTCTACCCCCCAAAACTCCGCCTCTCAGCCGCAA
GCGATCGCAAGCCCGGCGCGTCACCACCCCTCCCCATCTAATAATCCAAC
CACAGCACCAACGAGGACGACGACGACTGTTGATGTTGAGCCGACGATCG
CCCAACCTCCGATGTTGGCGGCGGCGGCACCGCGCGGTACGTCGCAGGGT
GCATCTCTAGGTGCAGTGCTTATGAATTCCTCGTTCCAGGCCGCGGGAGT
GATGGAGCCTGATGCCGCCGTAGTGCCTCCACGCTATCACTTCTGGAGTA
AAAGTTTTGCGACTTCTTTTGCTGCTTCTTCCGGAGCTGCTTCAGGAGCT
GCACGTGCGGGCTTGGTGGTTGCACCCGACGACGGCAAGCCAAGCGAGGC
GAAGCCTGCAGGAGCTGCGCAAGAGCTAGCTGGAGGGCTGTCTACTCAAG
AATCCTCTGACGCTGTGGCAGTGGCAAAGGCAAACGGCGGCGTCGATGAA
ATGGAGGTTGATGACGATGGTGGAGGTTCTGCTGGTGCTGCATCATCGCC
TACCCAGAGTTTGGCCCAGGTGATCCCGATGAACACAGTTGGTTTGAGAG
CAGACGAGATTGGCGACAGGGATTCGAAAAAGGATGGGCCCGACGACAAG
CCGGAAATGCCACCGCTCAAGCCCCAGAAGAGATCGAAGATGTTACCTGC
TGGTTATCTAAGCTATTTTGATGGCTGTGGCAAGGCGAACGCACGAACTG
GCGTCGACGGATTATCTCTGGAATATAGGCGCGTAAACGCGGGCTCGTCA
GAAGTTTGTGCGGTGGAAGCAGCTGTTCTTGCAGCGAGGGCTGCTGCAGC
CACACCTTGGATTAGTGACCGGTGGCGTCTGAGCGAAGATCAAGTTGACG
AAGACTTGGCGATGCTCAAGATCGAAGATGTTACCTGCTGGTTATCTAAG
CTATTTTGATGGCTGTGGCAAGGCGAACGCACGAACTGGCGTCGACGGAT
TATCTCTGGAATATAGGCGCGTAAACGCGGGCTCGTCAGAAGTTTGTGCG
GTGGAAGCAGCTGTTCTTGCAGCGAGGGCTGCTGCAGCCACACCTTGGAT
TAGTGACCGGTGGCGTCTGAGCGAAGATCAAGTTGACGAAGACTTGGCGA
TGCTCAAGTTACTGGTTGGCATCGCAAGCGAGGAAACCCCTGCCGCCTCC
GTAGCAGTGTCAAGTACTATTACAAATCACGAGACCCCGTCATCATCCAA
AGCGGGGGGCCGTTCGACTCCGCCGACAACGACCCCAACGCCGCCGCTGT
CTGGCTCTCAGTACGGACCCCATGCAAGCGAGGAAGGCACAAGCTCCACC
CCTAGCACACCAGCATCATCACCATCAGGTACGGCAGGACCTGCTCCATC
GTCTGCCGCTAATGTGGGCAATTTAGTTGCTAGTCCAAAGTCCCCCTCCA
CCGTGGACCCCTCCGCCGTTTCAGGTGGTGGTTCGAGCGGCTGGAAGGGG
AAGGGACCCTTGGTACCCAAGGGCAGTAGTAGTAGTAGTAAGCTTGTCGC
TTCATCGCTGCCGAAAGCACAGGAATATGTTGCCGGGTCTGGGGTTGGGG
ACGGAGCTGCTGATGGTGGTGGTGCTGTCGCATCTACTAGAGCGGATGAA
GAGGGAGGATACGCGAGTGTGGTGATAGACGTTGACGGGAAGGAAAACGC
GTCCATGGCGTCGAAGGCGAGCGGTAGCGACGCGAACGATGAAGCGCGAG
GCAGAGGCAGCAGAGGTAGTGCTGGGGGATTAGCGGCAGGGGCAATGGCC
GGGTTACTGGTTGGCATCGCAAGCGAGGAAACCCCTGCCGCCTCCGTAGC
AGTGTCAAGTACTATTACAAATCACGAGACCCCGTCATCATCCAAAGCGG
GGGGCCGTTCGACTCCGCCGACAACGACCCCAACGCCGCCGCTGTCTGGC
TCTCAGTACGGACCCCATGCAAGCGAGGAAGGCACAAGCTCCACCCCTAG
CACACCAGCATCATCACCATCAGGTACGGCAGGACCTGCTCCATCGTCTG
CCGCTAATGTGGGCAATTTAGTTGCTAGTCCAAAGTCCCCCTCCACCGTG
GACCCCTCCGCCGTTTCAGGTGGTGGTTCGAGCGGCTGGAAGGGGAAGGG
ACCCTTGGTACCCAAGGGCAGTAGTAGTAGTAGTAAGCTTGTCGCTTCAT
CGCTGCCGAAAGCACAGGAATATGTTGCCGGGTCTGGGGTTGGGGACGGA
GCTGCTGATGGTGGTGGTGCTGTCGCATCTACTAGAGCGGATGAAGAGGG
AGGATACGCGAGTGTGGTGATAGACGTTGACGGGAAGGAAAACGCGTCCA
TGGCGTCGAAGGCGAGCGGTAGCGACGCGAACGATGAAGCGCGAGGCAGA
GGCAGCAGAGGTAGTGCTGGGGGATTAGCGGCAGGGGCAATGGCCGGG
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