mRNA_H-paniculata_contig2024.5229.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2024.5229.1
Unique NamemRNA_H-paniculata_contig2024.5229.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2024.5229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2024contigH-paniculata_contig2024:381..4787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size276
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.509949-CDS-H-paniculata_contig2024:380..5551622929523.509949-CDS-H-paniculata_contig2024:380..555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 381..555 +
1691480897.7373116-CDS-H-paniculata_contig2024:380..5551691480897.7373116-CDS-H-paniculata_contig2024:380..555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 381..555 +
1622929523.524976-CDS-H-paniculata_contig2024:4687..47851622929523.524976-CDS-H-paniculata_contig2024:4687..4785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 4688..4785 +
1691480897.7483954-CDS-H-paniculata_contig2024:4687..47851691480897.7483954-CDS-H-paniculata_contig2024:4687..4785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 4688..4785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2024.5229.1prot_H-paniculata_contig2024.5229.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2024 381..4785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2024.5229.1

>prot_H-paniculata_contig2024.5229.1 ID=prot_H-paniculata_contig2024.5229.1|Name=mRNA_H-paniculata_contig2024.5229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
RALDRLLFQGFHVSPPRSMLRLYVILALTLAGSKCSSTRAFVSAPQHLLR
GVCARGMTGYDRGSISRLGRERRERSDSGCARRVMFPVMRA
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mRNA from alignment at H-paniculata_contig2024:381..4787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2024.5229.1 ID=mRNA_H-paniculata_contig2024.5229.1|Name=mRNA_H-paniculata_contig2024.5229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4407bp|location=Sequence derived from alignment at H-paniculata_contig2024:381..4787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCCTTAGATAGGCTGCTCTTTCAGGGGTTTCACGTTTCGCCACCAAG
GAGCATGCTACGGCTGTACGTGATACTGGCGTTGACGTTGGCAGGGTCAA
AATGTAGCAGCACCCGCGCCTTTGTCTCAGCCCCCCAACACCTTCTCCGT
GGAGTTTGTGCGCGAGGAATGACAGGCAAGATTAAAACCACACCCTAGAG
TCGGTGTCATCGGCTGAGAGACGGGCTAACTGCTAGTCATGTAGTTGCGA
CAACAACACAAACTACCTCCATTGTACAGCTGACAGCTGAAAGATTGATT
GCACCTGCAGTCGAGGCACGATGCGGTTTGCCTGTATTTTCGTGTTGCTG
TTTTGTTTATGGTATACACAACGTTTCTGCGTACACTTGTGTTGGTCGCG
ACTGTACCGTAGGTTTCGGTGCATGAAAACTGTACTGTTGTACTGTGGTA
CTCCGCACGTTGCGGCAGTTGGCAAACATGGCCATTTTCGCGACTCAAGT
GTAGGGTGCTGACCCTCCCCCTAGTGAAGGTTATTAACTTTGGGTGAATA
AATTCCGCTTTGGTAACCTTGGAACCTCAGGCTAAAAGCTGCCCTTTGGT
CCGTCATGGTCTCGCACTGCAACACTGAAATCAGTGTCCAATTGCGTCAG
CGGGCATCTATTATATGTAACTTGTATTTGTAACTGCGCTACCCAACACA
CGTGGCAGGCAGATAGAGATGCGGTTCTAAGTCCCCTCACAAGCAGCACG
ACAATTGCATCTTCTGGTCAGTCGAACCATGGGAATTGGTTACAAGGCTA
TGCGCTTTTTTTCATGCATCTGCACCCACAATTGTAGTTGTCGTGTTAAA
TGAAATTAAAAAACATATAGCTTACATTGTATCCACGGTCCACAACATGC
AAATAAACTAGTGAGGCAGCACATTACGATACAGGATACGATGATGGTAT
TTACCACCTACCATTACCACACCCCACACGTACAGCCCGGTTTTTGTGTA
GAGGCCTTGTGGAGATCAGCTCACGAGGGGTTGTGGCACACATCTTCATC
GCCTATGCACACGTCTGCTGTCAGCTGCTGTGCATCTGTTGTCAGTCAAC
GTAAGCTGGCTGTAACTTTCATGAATATCACCAATACTATTACAAGTACA
AGTATCTGTAAAGTTAGAGAGCGGTGCGGGCAGATGTTAGCATCCCTGCA
TTCTCGCGTAATTGTCTGTACTTTGTCTGCAGATAGACCTTTGTTGTAGT
AAATTACAACTCTGCCCCACTACCAAAAGTATCATGTAGTAAGAAATTGA
GCACTTTGTGGGGCAATAGTAAGTAGTATCTACATAATAAATACGCCCAG
AATATGATAAGGTTCAATCTTTTTAAGGTTCACCGCCAGCGGTCCTTACC
ATCGACCGAAAGTGTATTTAAACATACGTTCATGATCTGTAACTGCCTGG
AAATGTACACAGCATAAATTCACTTGGTTTTGGAACCAATCGTAGTTGTG
TCTGCTCTGTAAAGGGTACTTTAACCCCCCACACCTGAAGAAATAAATAC
GGGAAAAAATAGCTTTGTTCGAGGAAGCTCAACACCTAATTACCGACTAC
GATAAGTAGCAGTCATGTCTCCATATCCCGACTGCCATGGATATGGTAGA
CCGGCTGCTGCTGTATCTGTGGAGACCTTTACTCATAATAGGACGCCACA
CACGCGGCGGCTATCATTCGCGACGGAAATCTCGGGGTAATTTACGGGTT
CCTGCCAGCTGTTGTGTGCCGCAAATATGCTGTCAATATATTTCGTCGCC
GGATGCAAGTCTACGGCATCATGCTGTTGGCGCTGTGCAGCTGACTGCCA
CCCCTTGAGGGACCCACTGTATGTACTGCAGTCTATCAGCTGCACCAGTT
CCTCCATCAAGTACACGGCGTCCCGGTTGCTGTGCCAGCCCTTGACGTAC
GTGAATTTTGTCAAAATTGCCAATACCAGCATTCACCTAGCGTCGACATC
TTGTGTTTTTAATTCATATGAATAACCAATATACGGCGCAATCCCGCTGT
AGTATTTGCCATGTGTTTGTCGGCACGCGGGTCTGATCTTTACCCGATCA
ATGCAATTTTGTCCGTCGAATTTCGGTATCCCCCCCTGCCAGAAACTTCG
CCACGTCGAAATTTGTCAAAATGTGGGTTTACTGGTCTGTAGGGGTTATA
ACCCTTGAGGAAAGCATCGGATAGAGGTTTTTGCCTTAGCCTTTCGGAGG
TTAAAAAAAATAAATAAATAACTTCAGGAACCGGACTTCGTGACGGCCAA
AAGGTAGCGTTGCCAACGACCAGTTGTAATTAATTACGAATACTTCGACA
GAATACCTTGAACTTCTCTGGAGAGCTGATTAGCTCATCTCAGTTGCAAC
AGGGGGTCCGTATTTTGTCGCTTTGGGGAGTTTTATAATGGATCTAGTGT
AAAGGAAGTATAGGCAAACACCGGCTTTTTCGTACCGGCTAGATGGTAGT
GATGAACAAGCACTCCCGCCATTACTGTTAGTAGCTCATCAGGGGGTTAG
AAGTTACTAAAGGGTTACACCGTAAAGGTTGGATAGACTGTCATCACACC
ACGCCATACAACTTCCGTGTTGTTCGCTGAAGCCATGTCTCATCCGTGCA
AGACAAAGCTCAGAGAGACACGCACACTTTGCGCACTGCTCCTTCCAGAC
GGGGTGCTCAATGTGCCTACTTTGTAATGATAAAGGACCAGCTAGTCTCT
GACTTAGTCCTAGAGCTAGCTCCCGCCAACGTTGTATGCTGAAGACATAA
GTCTTGATGTAATCTCAAGCAGGCTGTGTATGATGCAAATTTTTAAGATC
AGCATGCCGTTGTCCTTTGCTCGCAATGGCTGTCCAACTCTAAACTCTCC
ATACACCCGACAGAAAGTCTGAGCACGAATCTTCTCTTTGCAGATATGGT
GTCTACTGGTACGTGTAACCGCAGCGAGATATCTTGTGTGGACTTATATA
AATAGGGGGAAAATACCACCTGCCTTGTTCTTTTACAGTATGACGATGAT
AGTCTTTGGAGGCATGAACATGAGAACACTTTCTAGGCCTTCGGCTCTGG
AGATGTGAAAATATGTACTGTGGTATAATGATACGCTTGTTGAAGCGTTT
TCGAGAATGACATTTACATATACATGGGTCTACCAAAGCGGAGTATGACT
GCCTTTGGGCTTGCGGGACGCGCTTGACTTTCCGCTTGGGGACTAAGCAT
CGCATATGAACTCCTAATGGGCATTTTACCGCCTGGCGGAGTTTGTGGTT
ACCACTGCAGCCGGTGTGCGCGAGTAATAAGAACATTTCAAACAGACGCC
GTGTTGACAAATCGACGCGCTGGGGGGTTTACCTCACGACACTAGCTGTT
AATGGATAAAAACAAATACAATTTAAGTTCAGAAAAATGGTCAAAACTCT
CTCATTTCGCTGCCTACTGCTGGTTACTTCCGACGAATGGATTTATAACC
TACATGGCACTCTGGAACATGAATCCAACTCGCGTGAGAAATGTACACTG
TGAGATGTAGGTGATGGTCGGATGCCCACGGCTTAGGCCTCGAGCATCTT
TGGAACCCTTCGCCCGGGGACGTGCAAAAAAATGAACTACTGGGGTCTTT
TTTGACGTTGCGAGTCGCGCCGATTTCACAAAATCTCAGTACAGAGTAAT
TTGGATGTTTTTCGCAAGACGTTAAGAATTATGAACGTATATGTCGTCGT
TCAAGTAGACATGCGCGTGCGTACATGGCCCCAATCAACCCACGAAGCAC
CATGGATACGTGCTACGATAGTAGCTGACGGTCGGATGCCCTCTTGATGC
CCTAGTTCTAGTTTTAGGCGTACAGAAGAAGCTTCGTAAGAGTGGCGGGT
GGCGTGCACATCGAGCACACGCTGCCCACTTTTGAATTTTGCGGAGGTTT
CAAGTCGAACCGAAAATCAATACCATTTGTTTAATATTCTTGTACTGTAT
GTACGTTGCTGCTCTGCTGCACTTGTCACACCTCTCACAGCTGTAGCATA
GTCCAACGATCAGTTAGTAGGTTTGACCAACCGACTAGAGCACGTTATGA
TGTACGTAGCTGATGTAGGTCACGGAGGCTTGTTGGTGTTATGGTGTTAA
GCAAGTGCAGCATAGGGTGCATGCATGTACGGATATGCTGCGCGGGGCCT
AGCCTGTGGCTCTACGAATGTACTACACACCCTACAGCTGTAGATGGCAT
CAAGTCATCATACCACCCCCTTGCCTATATACCACCCTTCAACATTGAAC
GTTCCAGGGTACGATAGGGGGTCGATAAGTCGCTTGGGGCGGGAACGGCG
AGAGAGGAGTGACAGTGGTTGCGCTCGTCGCGTCATGTTTCCAGTCATGC
GGGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2024:381..4787+

>mRNA_H-paniculata_contig2024.5229.1 ID=mRNA_H-paniculata_contig2024.5229.1|Name=mRNA_H-paniculata_contig2024.5229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig2024:381..4787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCCTTAGATAGGCTGCTCTTTCAGGGGTTTCACGTTTCGCCACCAAG
GAGCATGCTACGGCTGTACGTGATACTGGCGTTGACGTTGGCAGGGTCAA
AATGTAGCAGCACCCGCGCCTTTGTCTCAGCCCCCCAACACCTTCTCCGT
GGAGTTTGTGCGCGAGGAATGACAGCGGGCCTTAGATAGGCTGCTCTTTC
AGGGGTTTCACGTTTCGCCACCAAGGAGCATGCTACGGCTGTACGTGATA
CTGGCGTTGACGTTGGCAGGGTCAAAATGTAGCAGCACCCGCGCCTTTGT
CTCAGCCCCCCAACACCTTCTCCGTGGAGTTTGTGCGCGAGGAATGACAG
GGTACGATAGGGGGTCGATAAGTCGCTTGGGGCGGGAACGGCGAGAGAGG
AGTGACAGTGGTTGCGCTCGTCGCGTCATGTTTCCAGTCATGCGGGCGGG
TACGATAGGGGGTCGATAAGTCGCTTGGGGCGGGAACGGCGAGAGAGGAG
TGACAGTGGTTGCGCTCGTCGCGTCATGTTTCCAGTCATGCGGGCG
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