mRNA_H-paniculata_contig20234.5227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A6H5KU00_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU00_9PHAE) HSP 1 Score: 156 bits (394), Expect = 7.820e-46 Identity = 63/91 (69.23%), Postives = 75/91 (82.42%), Query Frame = 1
Query: 19 WPYDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTD-GHIECLYHGWQFNGKDGKCVHIPQV 288
WPYDWRKHWY +GY++D G KPF +SIFDEPL++YRD G LQCVSDFCPHRA+KLSEG +T+ G+IECLYHGWQF G G CV +PQ+
Sbjct: 86 WPYDWRKHWYAVGYDRDIVEGPKPFAVSIFDEPLMLYRDTSGALQCVSDFCPHRAAKLSEGQITEEGNIECLYHGWQFEGSKGTCVKVPQL 176
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: D7FIF8_ECTSI (Rieske domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF8_ECTSI) HSP 1 Score: 135 bits (340), Expect = 3.530e-38 Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 43 WYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVT-DGHIECLYHGWQFNGKDGKCVHIPQV 288
WY +GY++D G KPF +SIFDEPL++YRD G LQCVSDFCPHRA+KLSEG +T DG+IECLYHGWQF G G CV +PQ+
Sbjct: 30 WYAVGYDRDIVEGPKPFAVSIFDEPLMLYRDTSGALQCVSDFCPHRAAKLSEGQITEDGNIECLYHGWQFEGSKGACVKVPQL 112
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A388KFK8_CHABU (Rieske domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KFK8_CHABU) HSP 1 Score: 131 bits (329), Expect = 2.260e-33 Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1
Query: 25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQV 288
YDWR WY + KDFP KP +++FD+PLV+YRD G ++CV D CPHR +KLSEG V +G IECLYHGWQF G+ GKCVHIPQ+
Sbjct: 189 YDWRAEWYPVYCSKDFPSD-KPVAVTLFDKPLVLYRDDKGMVRCVEDMCPHRLAKLSEGQVLNGRIECLYHGWQFEGESGKCVHIPQL 275
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A388KY13_CHABU (Rieske domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KY13_CHABU) HSP 1 Score: 130 bits (326), Expect = 6.010e-33 Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 1 EDENEAWPYDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQV 288
+D + PYDW+ WY + Y ++FP G KP ++IFD+PLV+YRD G ++CV D CPHR +KLSEG + +G +ECLYHGWQF G+ GKCV IPQ+
Sbjct: 189 DDSQKQVPYDWQAEWYPVWYSREFPDG-KPVPITIFDKPLVLYRDSAGIVRCVEDKCPHRLAKLSEGQLLNGRLECLYHGWQFEGETGKCVQIPQL 283
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A251RLE2_HELAN (Rieske domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RLE2_HELAN) HSP 1 Score: 127 bits (320), Expect = 1.810e-32 Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query: 25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQV 288
YDW + WY L KD P P GL++FD+ +V+YRDG+G LQC D CPHR +KLSEG + DG +ECLYHGWQF G +GKCV IPQ+
Sbjct: 73 YDWTEEWYPLYLTKDVPDDA-PLGLTVFDKQVVLYRDGNGDLQCYEDRCPHRLAKLSEGQIVDGRLECLYHGWQFEGNEGKCVKIPQL 159
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A218QBH7_9CYAN (Rieske [2Fe-2S] domain-containing protein n=1 Tax=Tolypothrix sp. NIES-4075 TaxID=2005459 RepID=A0A218QBH7_9CYAN) HSP 1 Score: 124 bits (311), Expect = 1.540e-31 Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1
Query: 25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEKK 303
+DWR+ WY + + +D P +P+ S++DEP V++RD DG L C+ D CPHRA+K S+G +TDG IECLYHGWQF G DG+C+HIPQ+ E K
Sbjct: 24 FDWRQCWYPVCFVQDLPKN-QPYSFSLYDEPFVLFRDQDGKLVCLVDRCPHRAAKFSDGQITDGKIECLYHGWQF-GSDGQCLHIPQLPTEAK 114
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A9NLU4_PICSI (Rieske domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NLU4_PICSI) HSP 1 Score: 118 bits (295), Expect = 1.720e-31 Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1
Query: 25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQV 288
Y+W WY L + P P GL++FD+ LV+Y DG+G LQC D CPHRA+KLSEG + +G +ECLYHGWQF G DGKCV IPQV
Sbjct: 93 YNWENEWYPLYLAAEVPKDA-PLGLTVFDKQLVLYEDGNGVLQCYEDRCPHRAAKLSEGQLMEGRLECLYHGWQFEG-DGKCVKIPQV 178
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A7J8XTJ2_GOSAI (Rieske domain-containing protein (Fragment) n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8XTJ2_GOSAI) HSP 1 Score: 118 bits (296), Expect = 1.780e-31 Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEKK 303
Y+W + WY L KD P P GL++FD+ LV+Y+DG+G L C D CPHR +KLSEG + DG +ECLYHGWQF G +GKCV IPQ+ + K
Sbjct: 86 YNWTEEWYPLYLTKDVPDDA-PLGLTVFDQQLVLYKDGNGVLHCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-NGKCVKIPQIPADAK 176
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: V4JRA6_9GAMM (Uncharacterized protein n=2 Tax=Chromatiaceae TaxID=1046 RepID=V4JRA6_9GAMM) HSP 1 Score: 124 bits (311), Expect = 1.980e-31 Identity = 49/93 (52.69%), Postives = 70/93 (75.27%), Query Frame = 1
Query: 25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEKK 303
+DW +HWY + + +D P +P G SI+DEPLV+YRDGD L C++D CPHRA++LSEG + DG +EC YHGWQF+ +G+C HIPQ+ + ++
Sbjct: 25 FDWHQHWYPVSFLEDLPA-QQPMGFSIYDEPLVLYRDGDQRLVCLADRCPHRAARLSEGKLVDGRLECFYHGWQFDA-EGQCRHIPQMPSSRR 115
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A846B375_9CYAN (Rieske 2Fe-2S domain-containing protein n=1 Tax=Okeania sp. SIO2C9 TaxID=2607791 RepID=A0A846B375_9CYAN) HSP 1 Score: 116 bits (290), Expect = 2.070e-31 Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 1
Query: 28 DWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEKK 303
+WR WY + + +D P +P+ S++DEPLV++R+ +G L C++D CPHRA+KLS+G + DG IECLYHGWQF G G+C+HIPQ+ + K
Sbjct: 24 NWRNCWYPVTFIQDLPKN-RPYSFSLYDEPLVLFRNNNGQLICLTDVCPHRAAKLSDGQIIDGKIECLYHGWQF-GNGGECLHIPQLPADAK 113 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20234.5227.1 >prot_H-paniculata_contig20234.5227.1 ID=prot_H-paniculata_contig20234.5227.1|Name=mRNA_H-paniculata_contig20234.5227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp EDENEAWPYDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLback to top mRNA from alignment at H-paniculata_contig20234:2634..4044- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20234.5227.1 ID=mRNA_H-paniculata_contig20234.5227.1|Name=mRNA_H-paniculata_contig20234.5227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1411bp|location=Sequence derived from alignment at H-paniculata_contig20234:2634..4044- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20234:2634..4044- >mRNA_H-paniculata_contig20234.5227.1 ID=mRNA_H-paniculata_contig20234.5227.1|Name=mRNA_H-paniculata_contig20234.5227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig20234:2634..4044- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |