mRNA_H-paniculata_contig2023.5225.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2023.5225.1
Unique NamemRNA_H-paniculata_contig2023.5225.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: D8LNM3_ECTSI (Phosphoribosylaminoimidazole carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNM3_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 6.290e-113
Identity = 198/318 (62.26%), Postives = 229/318 (72.01%), Query Frame = 2
Query:   80 RMSSTTAQGSSDDHDLPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARST-------------------------PDEKTSPIVATRVSPEKWATISATGLLPGA-TFHADAKLLFIGDAPTLQ-------PGMS-----TLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNS 919
            R  S+TA G     DLP +LA+VAAG+LSP+     L PLLVSGGA+AE+VGG+AKIDHDR RR GFPEVVFG+GK+A+QI +I+ +M+R+    +                              SP+VATRVSPEKW  IS    LPG  T+HADA+++  G+ P  +       PG S     ++G VAV SAGTSDL VAEEAA+L ELAGAEV RFHDVGVAGIHRLL AIP V+ AG+ IC+AGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSV+NIDNGFGAAAFAVKLL S
Sbjct:    5 RSLSSTATGGEAAGDLPALLARVAAGDLSPATAASQLAPLLVSGGAQAEDVGGFAKIDHDRRRRVGFPEVVFGDGKSAEQITDILAAMIREARAGSRVAAEAAAVHXXXXXXXXXXXXXXXXXXXXSPVVATRVSPEKWLVISDA--LPGQLTYHADARIVSFGEPPQRRRAAGDGAPGGSIATSISIGTVAVLSAGTSDLAVAEEAAVLAELAGAEVSRFHDVGVAGIHRLLGAIPSVQKAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKS 320          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A835ZD94_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD94_9STRA)

HSP 1 Score: 248 bits (633), Expect = 2.610e-76
Identity = 144/270 (53.33%), Postives = 179/270 (66.30%), Query Frame = 2
Query:  161 LSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQAR------------------STPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKL-LFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLL 913
            + P+A  E L PLL        ++G +AKIDH R  RTGFPEVV+GEGKT +QI  IM+ M+R +                    S+     +P VA+R+   KW+ +     + G  ++ DA+L ++ G AP   P   +LG VAV  AGTSD+ +AEE A+L EL GA V R +DVGVAGIHRL +A+P V  A   +CIAGMDGAMP VVAGLV+CPVVAVPTSVGYGAA  G+APLLTMLNACAPGV+V+NIDNGFGAAA AVK+L
Sbjct:    1 MGPAAAVEQLEPLLT-----IAHIGDFAKIDHHRTIRTGFPEVVYGEGKTPEQIRHIMEVMIRHRKSHSXXXXXXXXXXXXXXXXSSGSVDHAPAVASRICSAKWSHLQH---IDGLQYYRDARLAVYHGSAP---PAAGSLGTVAVMCAGTSDVAIAEETAVLLELCGAAVERVYDVGVAGIHRLFAALPRVRAAHCAVCIAGMDGAMPSVVAGLVRCPVVAVPTSVGYGAAFGGVAPLLTMLNACAPGVAVVNIDNGFGAAAMAVKIL 259          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A3C0N4P5_9CYAN (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A3C0N4P5_9CYAN)

HSP 1 Score: 224 bits (572), Expect = 2.980e-67
Identity = 140/275 (50.91%), Postives = 181/275 (65.82%), Query Frame = 2
Query:  125 LPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNERLAGGGK 949
            L ++L  VAAGE+ P+   E L  L        E VG +A+IDH R  RTGFPEV++G GKT  QI +IM+ M RD A   PD    PI+ATR+ P+ +A +     +PG  ++  A++  I    TL+P  S  G +++  AGTSDL VAEEAAI  EL G +V R  DVGVAGIHRLL+    + +A ++I IAGM+GA+P VVAGL  CPV+AVPTSVGYGA  SGLAPLLTMLN+CA GV V+NIDNGFGAA  A ++L + ++     G+
Sbjct:    7 LQSLLEAVAAGEVKPAVALEKLKHLAY------ETVGDFARIDHHRRLRTGFPEVIWGPGKTPDQIAQIMEVM-RDAAA--PD--IVPIMATRIEPDVFAKLQEK--VPGIQYYPTARICAI-TPKTLEPTYS--GIISLICAGTSDLPVAEEAAITAELCGFQVRRLWDVGVAGIHRLLNNRQVIAEANVLIVIAGMEGALPSVVAGLADCPVIAVPTSVGYGANFSGLAPLLTMLNSCAAGVGVVNIDNGFGAAILAGQILRTAHKLQGSTGE 265          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: UPI0016878F7A (Nickel pincer cofactor biosynthesis protein LarB n=13 Tax=Coleofasciculus TaxID=669368 RepID=UPI0016878F7A)

HSP 1 Score: 224 bits (571), Expect = 3.480e-67
Identity = 136/269 (50.56%), Postives = 177/269 (65.80%), Query Frame = 2
Query:  125 LPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIV-ATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNE 928
            L ++LA VAAG++SP A  E L           E VG +AKIDH R  RTGFPEV++G GKT +QI  IM++M             +P+V ATR+ P  +A +     + G  ++A A++  I  A TL+P  S  G +A+  AGT+DL VAEEAA+  EL G +V R  DVGVAGIHRLLS    +E A ++I +AGM+GA+P VVAGL  CPV+AVPTSVGYGA+  GLAPLLTMLN+CA GV V+NIDNGFGAA  A ++L + ++
Sbjct:    7 LQSLLAAVAAGDVSPEAALEKLKHFAF------EPVGDFAKIDHHRTLRTGFPEVIWGPGKTPEQIAGIMEAM----------RSRNPVVMATRIEPAVYAQLQEK--VAGLQYYASARICAISPA-TLEPQYS--GTIAILCAGTADLSVAEEAAVTAELCGFQVQRLWDVGVAGIHRLLSNRHVIESANVLIVVAGMEGALPSVVAGLADCPVIAVPTSVGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAILAGQILRTAHK 254          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: UPI00187FF609 (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=Gloeocapsopsis crepidinum TaxID=693223 RepID=UPI00187FF609)

HSP 1 Score: 223 bits (568), Expect = 9.170e-67
Identity = 133/268 (49.63%), Postives = 180/268 (67.16%), Query Frame = 2
Query:  125 LPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNE 928
            L ++L  VAAGE++P+   + L  L        E VG +A++DH R  RTGFPEV++G GKT  QI +IM +M RD+         S ++ATR+ PE +A +     +P   ++A A++  I  APT++P  S  G + + SAGT+DL VAEEAA+  EL+G  V R  DVGVAGIHRLL+    +E A ++I +AGM+GA+P VVAGL  CPV+AVPTS+GYGA+  GLAPLLTMLN+CA GV V+NIDNGFGAA  A ++L + N+
Sbjct:    7 LRSLLESVAAGEVNPAEALDKLKHL------NYEPVGDFARVDHHRRLRTGFPEVIWGLGKTPDQIAQIMMAM-RDRG--------SVVMATRIEPEVYAQLQEK--VPNLHYYAMARICAI--APTIEPQYS--GTIGILSAGTADLPVAEEAAMTAELSGFRVQRLWDVGVAGIHRLLNNRHVIESADVLIVVAGMEGALPSVVAGLADCPVIAVPTSIGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAVLAGQILRTVNK 253          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A350YA24_9CYAN (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A350YA24_9CYAN)

HSP 1 Score: 222 bits (565), Expect = 3.410e-66
Identity = 134/268 (50.00%), Postives = 175/268 (65.30%), Query Frame = 2
Query:  125 LPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNE 928
            L ++L  VAAG++S     E L           E VG +AKIDH R  RTGFPEV++G GKT  QI +IM++M R         +   ++ATR+ P+ +A + A   + G  ++  A++  I   P +QP     G ++V  AGTSDL VAEEAA+  EL G +V R  DVGVAGIHRLLS    + DA ++I IAGM+GA+P VVAGL  CPV+AVPTSVGYGA+ +GLAPLLTMLN+CAPGV V+NIDNGFGAA  A ++L + N+
Sbjct:    7 LQSLLEAVAAGQISSDIALEKLKNFAF------EPVGDFAKIDHHRSLRTGFPEVIWGLGKTPNQIAQIMEAMQR---------RNPLVMATRIEPDVFAQLEAH--IAGIHYYPTARICAIAPNP-IQPKYP--GIISVICAGTSDLPVAEEAAVTAELCGFQVQRLWDVGVAGIHRLLSHRQMIADANVLIVIAGMEGALPSVVAGLADCPVIAVPTSVGYGASFNGLAPLLTMLNSCAPGVGVVNIDNGFGAAILAGQILRTANK 254          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A1Z4IRY5_9CYAN (Putative phosphoribosylaminoimidazole carboxylase catalytic subunit n=4 Tax=Nostocales TaxID=1161 RepID=A0A1Z4IRY5_9CYAN)

HSP 1 Score: 221 bits (564), Expect = 3.510e-66
Identity = 129/269 (47.96%), Postives = 176/269 (65.43%), Query Frame = 2
Query:  113 DDHDLPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNS 919
            D+  L ++L  VA G ++P A  E L  L        E VG +AKIDH R  RTGFPEV++G GKT+ QI +IM++M          ++   ++ATR+ P+ +A +     + G  ++  A++  I   PT++P    LG + + SAGT+DL VAEEAA+  EL+G  V R  DVGVAGIHRLL+    +E A ++I +AGM+GA+P VVAGL  CPV+AVPTS+GYGA+  GLAPLLTMLN+CA GV V+NIDNGFGAA  A ++L +
Sbjct:    3 DEKSLRSLLETVANGNITPDAALEKLKNLAY------EPVGEFAKIDHHRALRTGFPEVIWGPGKTSDQIAQIMEAM---------RQRNPVVMATRIEPDVFAALETK--VQGLCYYDSARICAI-TPPTIEP--QYLGTIGILSAGTADLPVAEEAAVTAELSGFRVQRLWDVGVAGIHRLLNNRHVIESASVLIVVAGMEGALPSVVAGLADCPVIAVPTSIGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAVLAGQILRT 251          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: UPI001680140E (nickel pincer cofactor biosynthesis protein LarB n=1 Tax=Pseudanabaena sp. FACHB-723 TaxID=2692860 RepID=UPI001680140E)

HSP 1 Score: 220 bits (561), Expect = 8.420e-66
Identity = 133/268 (49.63%), Postives = 171/268 (63.81%), Query Frame = 2
Query:  122 DLPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGN 925
            +L  IL  VA GELSP    E L  L        E VG +AKIDH R  RTGFPEV+FG GKT +QI++IM+ M         + K   ++AT++S   +A I     L G  +   AK+  +G++      M   G + + +AGT+DL +AEEAA+  EL G +V R  DVGVAGIHRLLS    + DA ++I +AGM+GA+  VVAGL  CP+VAVPTS+GYGA+ +GLAPLLTMLN+CA GV V+NIDNGFGAA  A K+L S N
Sbjct:    4 NLKQILDHVAKGELSPEIALEKLKYL------HYETVGDFAKIDHHRTLRTGFPEVIFGLGKTPEQIIQIMRVM---------ESKNPLVMATKISESVYAEIQPA--LRGLRYFPIAKICCLGEST-----MQKQGTITILTAGTADLPIAEEAAVTGELCGFQVKRLWDVGVAGIHRLLSHRETIADAEVIIVVAGMEGALASVVAGLADCPIVAVPTSIGYGASFNGLAPLLTMLNSCATGVGVVNIDNGFGAAMLAGKILRSRN 249          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A563W425_9CYAN (Pyridinium-3,5-biscarboxylic acid mononucleotide synthase n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563W425_9CYAN)

HSP 1 Score: 220 bits (561), Expect = 1.300e-65
Identity = 124/270 (45.93%), Postives = 178/270 (65.93%), Query Frame = 2
Query:  122 DLPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLL-FIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNE 928
            DL  +L +VA G L P      +  L        E +  +AKIDH RHRR GFPEV++GEGKT +QI++IMQ+M R        ++  P++ATR+    +  +     +P   +++ AK+   + +   LQ      G +++ +AGTSD+ VAEEAA+  EL+G +V R  DVGVAGIHRLLS + +V++A ++I +AGM+GA+P +V GL +CPV+AVPTS+GYGA+ +GL+ LLTMLN+CA G+ VMNIDNGFGAA  A K+L + N+
Sbjct:    6 DLKQLLQKVADGSLKPETALHQIKNL------GFEPIEEFAKIDHHRHRRNGFPEVIWGEGKTPEQIIKIMQAMQRQNQEL---QQPLPVMATRIEESVFTQLQTA--IPQLNYYSIAKIAALVPEYLMLQKS----GLISIITAGTSDIPVAEEAAVTAELSGFQVKRLWDVGVAGIHRLLSNLQYVQEADVLIVVAGMEGALPSIVGGLAQCPVIAVPTSIGYGASFNGLSALLTMLNSCASGIGVMNIDNGFGAAILAGKILKTANK 260          
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A7S2RJP4_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJP4_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.360e-65
Identity = 128/232 (55.17%), Postives = 157/232 (67.67%), Query Frame = 2
Query:  224 ENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNS 919
            E V  YA+IDH R RRTG PEV+FGEGK+ +QI+ I + M R  A   P+++    +ATRVS   +A I     LP   ++ DA++  +G    +Q   S   ++AV  AGTSDL VAEEAA+  EL G  V R +DVGVAG+HRLL   P V  A + I +AGMDGA+P VV GL  CPV AVP SVGYGAA  GLAPLLTMLN+C+PGVSV+NIDNGFGAA  AVKLL +
Sbjct:   65 EVVKQYARIDHGRGRRTGLPEVIFGEGKSVEQIISIFEVMKRH-ADELPEDQRRVAMATRVSKSVFAEIQTA--LPEVEYYEDARIAVLGQPKKVQ---SEERRIAVLCAGTSDLPVAEEAAVTAELFGYTVDRVYDVGVAGLHRLLDQFPIVRKASVTIVVAGMDGALPSVVGGLATCPVYAVPASVGYGAAFHGLAPLLTMLNSCSPGVSVLNIDNGFGAAMCAVKLLQT 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNM3_ECTSI6.290e-11362.26Phosphoribosylaminoimidazole carboxylase n=2 Tax=E... [more]
A0A835ZD94_9STRA2.610e-7653.33Phosphoribosylaminoimidazole carboxylase n=1 Tax=T... [more]
A0A3C0N4P5_9CYAN2.980e-6750.91Nickel pincer cofactor biosynthesis protein LarB n... [more]
UPI0016878F7A3.480e-6750.56Nickel pincer cofactor biosynthesis protein LarB n... [more]
UPI00187FF6099.170e-6749.63Nickel pincer cofactor biosynthesis protein LarB n... [more]
A0A350YA24_9CYAN3.410e-6650.00Nickel pincer cofactor biosynthesis protein LarB n... [more]
A0A1Z4IRY5_9CYAN3.510e-6647.96Putative phosphoribosylaminoimidazole carboxylase ... [more]
UPI001680140E8.420e-6649.63nickel pincer cofactor biosynthesis protein LarB n... [more]
A0A563W425_9CYAN1.300e-6545.93Pyridinium-3,5-biscarboxylic acid mononucleotide s... [more]
A0A7S2RJP4_9STRA1.360e-6555.17Phosphoribosylaminoimidazole carboxylase n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2023contigH-paniculata_contig2023:3119..4803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score348.2
Seed ortholog evalue3.9e-93
Seed eggNOG ortholog2880.D8LNM3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AIR carboxylase
EggNOG OGs2S0IG@2759,COG1691@1
Ec32 ortholog descriptionNCAIR mutase (PurE)-related proteins
Ec32 orthologEc-08_006600.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1337
Cds size918
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2023.5225.1prot_H-paniculata_contig2023.5225.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2023 3165..4430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.876707-UTR-H-paniculata_contig2023:3118..31641622929522.876707-UTR-H-paniculata_contig2023:3118..3164Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2023 3119..3164 +
1691480897.4525898-UTR-H-paniculata_contig2023:3118..31641691480897.4525898-UTR-H-paniculata_contig2023:3118..3164Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2023 3119..3164 +
1622929522.960853-UTR-H-paniculata_contig2023:4430..48031622929522.960853-UTR-H-paniculata_contig2023:4430..4803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2023 4431..4803 +
1691480897.492807-UTR-H-paniculata_contig2023:4430..48031691480897.492807-UTR-H-paniculata_contig2023:4430..4803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2023 4431..4803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.9081018-CDS-H-paniculata_contig2023:3164..37341622929522.9081018-CDS-H-paniculata_contig2023:3164..3734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2023 3165..3734 +
1691480897.4679575-CDS-H-paniculata_contig2023:3164..37341691480897.4679575-CDS-H-paniculata_contig2023:3164..3734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2023 3165..3734 +
1622929522.9248748-CDS-H-paniculata_contig2023:4082..44301622929522.9248748-CDS-H-paniculata_contig2023:4082..4430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2023 4083..4430 +
1691480897.4763062-CDS-H-paniculata_contig2023:4082..44301691480897.4763062-CDS-H-paniculata_contig2023:4082..4430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2023 4083..4430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2023.5225.1

>prot_H-paniculata_contig2023.5225.1 ID=prot_H-paniculata_contig2023.5225.1|Name=mRNA_H-paniculata_contig2023.5225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp
MVSTPRVRSAARMSSTTAQGSSDDHDLPTILAQVAAGELSPSAGTEMLTP
LLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMV
RDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGD
APTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVA
GIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYG
AAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNERLAGGG
KRVES*
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mRNA from alignment at H-paniculata_contig2023:3119..4803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2023.5225.1 ID=mRNA_H-paniculata_contig2023.5225.1|Name=mRNA_H-paniculata_contig2023.5225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1685bp|location=Sequence derived from alignment at H-paniculata_contig2023:3119..4803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGGCTGTGCGCTCAGTAAACAATGGCAGAACACTTTCGCTGCTATGG TGAGCACTCCGCGAGTTCGTTCAGCAGCGCGGATGTCTTCAACAACAGCG CAAGGCAGCAGCGACGACCACGATTTGCCCACCATCCTAGCCCAAGTGGC GGCGGGAGAACTATCCCCATCAGCCGGCACTGAAATGTTGACCCCTCTCT TGGTATCAGGTGGAGCTCGTGCCGAAAACGTCGGAGGATACGCGAAGATC GATCACGACCGCCATCGACGCACGGGGTTCCCGGAGGTGGTTTTCGGGGA GGGAAAAACGGCCCAACAGATATTGGAGATAATGCAGTCCATGGTGCGGG ATCAGGCTCGTTCTACGCCAGATGAAAAGACCTCTCCCATTGTTGCTACC AGGGTCTCTCCTGAGAAGTGGGCCACCATCTCCGCTACGGGCTTGTTGCC AGGAGCGACGTTCCACGCGGATGCTAAATTGTTGTTCATTGGGGACGCTC CAACGCTGCAGCCAGGGATGTCGACACTGGGGAAGGTGGCCGTGTTCAGC GCTGGTACTTCGGATCTTTGCGTGGCGGAGGAGGCTGCTATACTGACGGA GCTCGCGGGAGCAGAGGTGAGCAAGTTTTGCCGCATCATATGGCCTAACC GCGAGGGAGTTGTGCCTACACGCTAGGCATTTCGCTTGCTCAGCGCTACT GTGGGCAATTCTACTGGATAGCGCCTTCATTAGGATACCAAACGCCTTTC TTCTCAAAGTCATTGTACGTGAATGGGCTACACATGAAAGGAGCAGCACC GTGTTGTATTTATGTATGGCTGAACACAAATGGATATTTAGAATAGTGCC GCGCATAGGCTGTTAATGCTGTTTCAATATCTGCGGCACTTGGTGCTTTT ACCCATTGAGGAAATCAACACCATGCATTTCGCCCGCCTCTCTACTTATT CTGCTTTCTTGCAGGTATTACGTTTCCACGACGTCGGTGTCGCTGGCATT CACCGACTTCTTAGTGCCATACCTCACGTAGAAGATGCAGGGTTGGTCAT TTGCATTGCCGGAATGGACGGAGCTATGCCGGGAGTGGTAGCCGGGCTAG TCAAGTGCCCAGTGGTGGCCGTGCCAACAAGCGTCGGCTACGGAGCAGCC ATGTCTGGGCTTGCGCCCCTGTTGACTATGCTCAATGCTTGCGCACCAGG CGTGTCAGTGATGAACATCGATAACGGTTTTGGAGCTGCTGCATTTGCGG TCAAGCTTCTCAACAGCGGCAACGAGAGGCTTGCTGGTGGAGGAAAGAGG GTGGAATCTTGAGCTTGTGTGTGGCACTGGCTGTTACACCGTATCTTGGA AAATTAGACATTCTTCCGTATTTTGTGACTGTGTCTCATGATATTTGGTG ATCAAGAATCAAAAGGGCACCGAAAAAGTGCAATCGACACCTAACCCCTA GACTTCAAGTTTCAAAATTTGTTGCGGGTTTGGAATCTGCATCGAAAATT AGCGAAACGCATTTTTGACCATTTTTTTTTCTTCTATGAAAAAGGGAGTG CGAGGGATTCAGGAATATAGATACTGATACCACCATGTGTGACTTTTGGT ATTTTGTGACAGTGACTTATAGATTTAGCATGCCCTGAATGTCGTGGAAT GTGAATGTCGTTGAATGGATCGTCACGTGTGCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2023:3119..4803+

>mRNA_H-paniculata_contig2023.5225.1 ID=mRNA_H-paniculata_contig2023.5225.1|Name=mRNA_H-paniculata_contig2023.5225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at H-paniculata_contig2023:3119..4803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAGCACTCCGCGAGTTCGTTCAGCAGCGCGGATGTCTTCAACAAC
AGCGCAAGGCAGCAGCGACGACCACGATTTGCCCACCATCCTAGCCCAAG
TGGCGGCGGGAGAACTATCCCCATCAGCCGGCACTGAAATGTTGACCCCT
CTCTTGGTATCAGGTGGAGCTCGTGCCGAAAACGTCGGAGGATACGCGAA
GATCGATCACGACCGCCATCGACGCACGGGGTTCCCGGAGGTGGTTTTCG
GGGAGGGAAAAACGGCCCAACAGATATTGGAGATAATGCAGTCCATGGTG
CGGGATCAGGCTCGTTCTACGCCAGATGAAAAGACCTCTCCCATTGTTGC
TACCAGGGTCTCTCCTGAGAAGTGGGCCACCATCTCCGCTACGGGCTTGT
TGCCAGGAGCGACGTTCCACGCGGATGCTAAATTGTTGTTCATTGGGGAC
GCTCCAACGCTGCAGCCAGGGATGTCGACACTGGGGAAGGTGGCCGTGTT
CAGCGCTGGTACTTCGGATCTTTGCGTGGCGGAGGAGGCTGCTATACTGA
CGGAGCTCGCGGGAGCAGAGATGGTGAGCACTCCGCGAGTTCGTTCAGCA
GCGCGGATGTCTTCAACAACAGCGCAAGGCAGCAGCGACGACCACGATTT
GCCCACCATCCTAGCCCAAGTGGCGGCGGGAGAACTATCCCCATCAGCCG
GCACTGAAATGTTGACCCCTCTCTTGGTATCAGGTGGAGCTCGTGCCGAA
AACGTCGGAGGATACGCGAAGATCGATCACGACCGCCATCGACGCACGGG
GTTCCCGGAGGTGGTTTTCGGGGAGGGAAAAACGGCCCAACAGATATTGG
AGATAATGCAGTCCATGGTGCGGGATCAGGCTCGTTCTACGCCAGATGAA
AAGACCTCTCCCATTGTTGCTACCAGGGTCTCTCCTGAGAAGTGGGCCAC
CATCTCCGCTACGGGCTTGTTGCCAGGAGCGACGTTCCACGCGGATGCTA
AATTGTTGTTCATTGGGGACGCTCCAACGCTGCAGCCAGGGATGTCGACA
CTGGGGAAGGTGGCCGTGTTCAGCGCTGGTACTTCGGATCTTTGCGTGGC
GGAGGAGGCTGCTATACTGACGGAGCTCGCGGGAGCAGAGGTATTACGTT
TCCACGACGTCGGTGTCGCTGGCATTCACCGACTTCTTAGTGCCATACCT
CACGTAGAAGATGCAGGGTTGGTCATTTGCATTGCCGGAATGGACGGAGC
TATGCCGGGAGTGGTAGCCGGGCTAGTCAAGTGCCCAGTGGTGGCCGTGC
CAACAAGCGTCGGCTACGGAGCAGCCATGTCTGGGCTTGCGCCCCTGTTG
ACTATGCTCAATGCTTGCGCACCAGGCGTGTCAGTGATGAACATCGATAA
CGGTTTTGGAGCTGCTGCATTTGCGGTCAAGCTTCTCAACAGCGGCAACG
AGAGGCTTGCTGGTGGAGGAAAGAGGGTGGAATCTTGAGTATTACGTTTC
CACGACGTCGGTGTCGCTGGCATTCACCGACTTCTTAGTGCCATACCTCA
CGTAGAAGATGCAGGGTTGGTCATTTGCATTGCCGGAATGGACGGAGCTA
TGCCGGGAGTGGTAGCCGGGCTAGTCAAGTGCCCAGTGGTGGCCGTGCCA
ACAAGCGTCGGCTACGGAGCAGCCATGTCTGGGCTTGCGCCCCTGTTGAC
TATGCTCAATGCTTGCGCACCAGGCGTGTCAGTGATGAACATCGATAACG
GTTTTGGAGCTGCTGCATTTGCGGTCAAGCTTCTCAACAGCGGCAACGAG
AGGCTTGCTGGTGGAGGAAAGAGGGTGGAATCTTGA
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