mRNA_H-paniculata_contig20222.5222.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20222.5222.1
Unique NamemRNA_H-paniculata_contig20222.5222.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20222.5222.1 vs. uniprot
Match: A0A061SAH2_9CHLO (Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAH2_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 1.140e-6
Identity = 35/123 (28.46%), Postives = 67/123 (54.47%), Query Frame = 3 
Query: 1308 DAFPRDNVLVHQLDL*VVLLLIIESRGDSRSDDAWFYVVFFMLHRWLGIISKNFEKTDGA-YFCGDKLTIADLKIVSLLRLIKS--MDILGPEVLESFSKLSGVMKTVTEEPKIAAFIAKHAK 1667
            +A   D ++    D+ + +   ++ + + +  +    +    L +WLG  +K+ E+   + Y  GD LTIADLK+ +L+ L+ S  +D +   + E F K++ +++ V  + K+ AF AKHAK
Sbjct:   83 EALAVDQIVDALEDMFLHVKPTVQEQDEKKKMEMRKVLAEETLPKWLGYFNKHIEENGSSGYIVGDSLTIADLKLYTLIGLLTSGMLDGIPKTIAEPFPKVTALLEKVGADEKVKAFEAKHAK 205
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BLAST of mRNA_H-paniculata_contig20222.5222.1 vs. uniprot
Match: D7FHE9_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHE9_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.010e-6
Identity = 33/98 (33.67%), Postives = 53/98 (54.08%), Query Frame = 3 
Query: 1380 SRGDSRSDDAWFYVVFFMLHRWLGIISKNFEKTDGAYFCGDKLTIADLKIVSLLRLIKS--MDILGPEVLESFSKLSGVMKTVTEEPKIAAFIAKHAK 1667
             + + R+D A  Y+      +WL  + K    TDG +F G ++T+AD+ I   L  +K+  +D +   + +S   L  +   V  EPK+AAF+AKHAK
Sbjct:   22 KKMEMRADLAANYIP-----KWLSNMEKQLSSTDGTFFDG-QMTVADMMIAYRLHHMKNGVLDGIPTTIADSCPSLCALYDAVVSEPKVAAFLAKHAK 113
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BLAST of mRNA_H-paniculata_contig20222.5222.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.270e-5
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 3 
Query: 1374 IESRGDSRSDDAWFYVVFFMLHRWLGIISKNFEKTDGAYFCGDKLTIADLKIVSLLRLIKS--MDILGPEVLESFSKLSGVMKTVTEEPKIAAFIAKHAK 1667
            +E R D  ++          + +WL  + K    TDG +F  DK+T+AD+ I   L  +++  +D +   + +S+  L  +   V  EPK+AAF+AKHAK
Sbjct:  116 MEMRADLAAN---------FIPKWLSNMEKQLSSTDGTFFF-DKMTVADIMIACRLHPMRNGVLDGIPTTIADSYPSLCAMCDAVVSEPKVAAFLAKHAK 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20222.5222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A061SAH2_9CHLO1.140e-628.46Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis s... [more]
D7FHE9_ECTSI9.010e-633.67Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A6H5KRV2_9PHAE1.270e-532.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20222contigH-paniculata_contig20222:155..4399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2800
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20222.5222.1prot_H-paniculata_contig20222.5222.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20222 4082..4399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.56143-UTR-H-paniculata_contig20222:154..14491622929522.56143-UTR-H-paniculata_contig20222:154..1449Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20222 155..1449 -
1691480897.3318655-UTR-H-paniculata_contig20222:154..14491691480897.3318655-UTR-H-paniculata_contig20222:154..1449Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20222 155..1449 -
1622929522.5821888-UTR-H-paniculata_contig20222:2894..40811622929522.5821888-UTR-H-paniculata_contig20222:2894..4081Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20222 2895..4081 -
1691480897.3543773-UTR-H-paniculata_contig20222:2894..40811691480897.3543773-UTR-H-paniculata_contig20222:2894..4081Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20222 2895..4081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929522.6006997-CDS-H-paniculata_contig20222:4081..43991622929522.6006997-CDS-H-paniculata_contig20222:4081..4399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20222 4082..4399 -
1691480897.3649328-CDS-H-paniculata_contig20222:4081..43991691480897.3649328-CDS-H-paniculata_contig20222:4081..4399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20222 4082..4399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20222.5222.1

>prot_H-paniculata_contig20222.5222.1 ID=prot_H-paniculata_contig20222.5222.1|Name=mRNA_H-paniculata_contig20222.5222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
GLYPTDNLEAAKCDAIVDDSTDIINKLRPFLYEEDQEKKVNTWKILQTRV
TTLPPAHEADFVHGHDYMGRTYTRSHSEGSYQWIRSGYRGYDVSPSCTVF
RALTE*
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mRNA from alignment at H-paniculata_contig20222:155..4399-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20222.5222.1 ID=mRNA_H-paniculata_contig20222.5222.1|Name=mRNA_H-paniculata_contig20222.5222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4245bp|location=Sequence derived from alignment at H-paniculata_contig20222:155..4399- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTGTACCCTACCGATAACCTCGAGGCTGCCAAATGCGATGCCATCGT
CGACGATAGCACCGACATCATCAACAAGCTCCGCCCTTTCCTCTATGAGG
AGGACCAAGAGAAGAAGGTGAACACTTGGAAAATATTGCAGACGAGAGTG
ACAACTTTGCCTCCTGCGCACGAGGCGGACTTCGTTCACGGCCATGATTA
CATGGGTCGAACCTATACTCGAAGCCATTCTGAAGGAAGTTACCAATGGA
TTCGATCTGGCTATCGCGGTTACGATGTGTCTCCGAGCTGTACTGTTTTC
AGGGCTTTGACGGAATAGTTGTGTTTTTCGTGCCCTTTTGATTTGTTTTA
CTCGACCACGCTGGCGTCCTGACTTCATAATTCATGTTCATTTTTCAGTT
TCATTAGACCCATGCGTTCTTGGTCTCACTTGGGTTACTCGATTGTCTTC
GTGCTCTCTACTGCGCCAGCTTCCTTACCGTAAGCTGGCCAATTTATGAC
GTACTCTTTTTAAATCGCTACATAGCTGTATCTGCAAGGACGGCACATGG
ATCATACGGAACCAACCCCATGACGCTTTGACTTGGGGAAGACCTTTGAT
GCACACACGGAAAGCTATTTGCGTTCTGTTTGGTGAAGAGCGCTTTTGTT
GTGTCTTTTGCAGATGGCGATGCGCAAAGAGCTAGTCGAAGACGACCTGC
CGGGGTGAGATTAGATAGAGAAGAGAATAGAGAGAGGAAGGGTTTTAAGA
AAGTTTTGAAATGATGGTAAATGTCCTCAATAGACGTTGGGTGATCATTA
CCTGCTTTAAGATGTTACTAAGATGGCCAGCACGAAAGGGTTTCATGAAA
GCTCTTCAAGTGCACAAGAACGAAATCCGCTATGTATGTCGCATGCACGT
GCAGATGCTCAATTGCCGATTAGTGTATCGTTAGCCGCGTAGAGTGTTCT
ATTGCATGCACCCCTGCAAGCCTGCCAGCTAGTTGTGACGGCTACGGTGA
TTCGAAGTGGATTCCCTTATCATACTGTCATGTTTTCCTGCTGACATTCC
TTACTCTTTCTCGTGCCCCACGAGGTTAGGTATTCGGTAATCGAGTTTAC
TGTATAGTCTTACACGGTTGGCCCGACGCTGTCAAGATCGATCCACTCCG
TGGTATCTGCAGTACCGATCAGAGCATTACGCGTGCCACATTGGTGGACG
AGGGACCATGCTGACCCGAAGCTACCCTCCACCCCCAAGTGTGGTGAAAA
GGGTATCGCGCCTGTTTTTCGTGTATATAGTGTGCCTCAAAAGCTACCCG
ATACCAAGATGCTTTCCCTCGTGACAACGTTCTTGTACATCAGCTGGATT
TGTGAGTTGTCTTGTTACTCATCATCGAATCCAGGGGGGATAGCCGAAGT
GATGACGCCTGGTTTTATGTTGTGTTTTTTATGCTCCACAGATGGCTGGG
AATCATCTCCAAGAACTTCGAGAAGACTGACGGGGCGTACTTCTGTGGCG
ATAAGGTACTGTATACTTTCCTTGTATACTTTCCTGTCAACAAGGCATCT
CACAAATTGGGGGAGTTGAGCCAAACCCCCGCCCCTCTCCCCCCTCTTCC
CTCTAGGCGCTCCTCGCTATCCTTGTGTTGATTTGCGTTCTACGGCGTGC
TGAGTGTGCATCCTCTTTGTTTGCTGTGGAGGTCTTACTGCATTTATGTA
ACACAAATTCAATGCTAAGACTTGTGCAGCCTTGGTGCAGTTCAAGACAG
ACAGATATGTGTGCAGCTCATGCATTAACCTTCAGACCAGAGGGCGTGGT
GAGGAGAGAGAGCGGGGAGGGTGGGCATCTCTCCCGGAAATCTCGGAAAC
ACGGAACCAAAAATCCAGAACTCATCACAATCCGAATCAGTTGAATGCCA
ATTCAGAGTCAGATCCACATGAAGGGCAGATTCAGTATAGTCAAACGCTC
CTGCGAACATACCAAGAATATTGTGGTCCAATAGAAACCTACGCCCGTGA
GGCTATTTCCCTATCCAATTCTAAGGATCCAGATTGGAAAGTTGTCCTAA
AAAATCGTACAACACATGTAGAAGCGCAGCGCATGGAAGAAATGGCGCAG
CACAACCTTGTTCGACTCCGTGGTGCGTTGGTCTCTCAAACGTTCAGATC
TCAGCCGACATATGCACTTGCTTCACGTGATGAATATTTGAATAGCCAAA
CCCGTACGTTGAGAAGAGCATACAAAACAAGATTCTGGGCAACTTTTCAT
GGATGATGATTTGCCAGCTATCTCAAAAGAATATAGTATAATATAACCCG
TGAGTTAGGAGAGAATCTCCAGCACGGCGCATGTCTAACTGTAAATCACA
ATATATTGTTGTTCGTAATGACCCCGTGCCGTCGCCGGGATCCCCGAATT
CCATTCCTTATCCATGAATCGACGCATCGTCTACCAGTGCGGCGACATCA
CCCAAACGTTTTACAGGGTAGAGGCGCTTTGGCTCTAGCTTGCCACATTC
TCTCCCGCTGGTGGCACACCCCGACACCCCAATCTGACATGATCCTTCGA
CAATCTAGGATGTGCCCTGCTCCCAAACTGCCGGTTGGCTCAGTACAATA
TTTGAACAATGAACGTCCCTCGAAGCGTAGGAAAATGACAGCATACTCCA
GTCACCCCCCCAGCCAAAAACAAGCTCTTAACGCAAGCTTGAGGTGTGGG
TCAAGCCGTGTGTTCTGTTTAACCCCTTGCCCATTATAACTATTCAATTT
GTTAAATATCGACTTGCGCTCGATACTACTATGGTAGAGTATGGAATGAC
ACCAAACTCAGATACTTTCCATTTCTATTTCGACGCTATTCCTCATATTA
TTGCTGGTCTTGTCCCGAAGCTGTCCTCCACCACTCTTTCTCTGGTCACT
TCATATTTCTGTCTCTCGTTAATGTCTTCTGGCGCCTGTTGTGGGGGCAG
CTCACCATCGCCGACTTGAAGATTGTATCCTTGCTCCGTCTAATCAAATC
TATGGATATCTTGGGCCCGGAGGTCCTCGAGTCTTTCTCCAAGCTTTCGG
GCGTCATGAAGACCGTCACCGAGGAGCCCAAGATCGCCGCCTTCATCGCT
AAACACGCAAAGTAGAACAATTTCTTACCGGTGAACACCACCCCGCAATG
GTCAAATATGTGGCTACGATACTTGTCAAATACGTTCGAGCGAGGGCTCT
GGATAACCGGGAAAATGAGCTATTATTTGAGCCGTCCGAAAAATCATTTG
GGGTGCTAATTGTAAGGAGTTGAGCTCACCGACCTTGCCCATATTTTGTG
GCATAGTTTGTCGTGGTGTACGGGGAAATGTGTCTCCCGGTTCGTATCCC
TGTCCTGGGGCACCGAAGTACGCCACCACAGAGTGCGACGAAGAACGAAT
GTGTCTGCTGTCGCTTGGGCCGTAGTGGTCCCGGACTTTGTAGCGGTTGG
ACATGGCGGTATTTGTGTCTCGGTGTTTTATTACTTTTTTTTGTGCTTTT
TGCAGGGTGATTAGTCGTGTATTATGGGAATACATACCGTCCTTCGGCGC
TTGGCGTCTGTCTCGTCCAGTTCGATAATGGTGTCGTTGTCATTGCTTGA
TCTTGTGTGTGCATATGTTTGTGTGTTTTTGTGTGAGATTTAGATGAAAG
CGCGTGTGCATGTACCTCGTCACTGCACGTGCGTCGATTTGTTTTGAATA
TGCGCTGGATCAACCATATGTGAGAAGCGTGCAACCGGATCGGGTTAGCC
ACCAGCAAATGCATGGTCAATCCCCCACACCCTACGAGTTTGGTGTGTGG
CGATTGTACTTCGCGAAGTGACCGTAGCCTTGCTCGCTTCGGTTGTTCTC
GTTGCCCGTGATACGATTGATAGGAATCTGTCGGAGTGTGTTGCCGTTCG
TGTAGTTTTCGAGGGAATGGTGACAAAAGACAGGTTGGCGACAAATACCT
GTTTATGTTTATTTCACAGGGTGCGGCTTCAGAAATATTTCGATAGTAAA
CAGCCGATCCTTCTAATTGAGGGTTGATTTATGGTTGAGGTTGAAAACGG
CATTTTCACACCATGAAAATTGTCAAAACTATTGTTGAGTTTGAATTTGT
AAGAGACTTCTTACATCATGTACCGCAACCACAAAATAATCTTGACAAAT
TATCCTCACTTCTTCTTGCTGATACTCCTTTCACTACGAGTTTGTCTTCT
TGGTTCATATGTCACCCTTTTTTCCTCAGTCAGGGATCAAGAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig20222:155..4399-

>mRNA_H-paniculata_contig20222.5222.1 ID=mRNA_H-paniculata_contig20222.5222.1|Name=mRNA_H-paniculata_contig20222.5222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig20222:155..4399- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTGTACCCTACCGATAACCTCGAGGCTGCCAAATGCGATGCCATCGT
CGACGATAGCACCGACATCATCAACAAGCTCCGCCCTTTCCTCTATGAGG
AGGACCAAGAGAAGAAGGTGAACACTTGGAAAATATTGCAGACGAGAGTG
ACAACTTTGCCTCCTGCGCACGAGGCGGACTTCGTTCACGGCCATGATTA
CATGGGTCGAACCTATACTCGAAGCCATTCTGAAGGAAGTTACCAATGGA
TTCGATCTGGCTATCGCGGTTACGATGTGTCTCCGAGCTGTACTGTTTTC
AGGGCTTTGACGGAATAGGGGCTGTACCCTACCGATAACCTCGAGGCTGC
CAAATGCGATGCCATCGTCGACGATAGCACCGACATCATCAACAAGCTCC
GCCCTTTCCTCTATGAGGAGGACCAAGAGAAGAAGGTGAACACTTGGAAA
ATATTGCAGACGAGAGTGACAACTTTGCCTCCTGCGCACGAGGCGGACTT
CGTTCACGGCCATGATTACATGGGTCGAACCTATACTCGAAGCCATTCTG
AAGGAAGTTACCAATGGATTCGATCTGGCTATCGCGGTTACGATGTGTCT
CCGAGCTGTACTGTTTTCAGGGCTTTGACGGAATAG
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