prot_H-paniculata_contig2022.5220.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2022.5220.1
Unique Nameprot_H-paniculata_contig2022.5220.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length249
Homology
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BLAST of mRNA_H-paniculata_contig2022.5220.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.050e-12
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 0 
Query:   29 KINSREEASALTGGITTDHVSRLVISGLDLDALP-DVLLSEKHDSLAVLHLQRNALVLLPSELFLNLKGLQELDGSENRLSYIPETIGTLSNLRKLRLR 126
            K+ S   A AL         SRL ++ + +DALP D+  S +   + VL L+ NAL +LPSELFL +  L+E+D S+NR+SY+PETIG  + LRKL L+
Sbjct:   10 KVASNRVADALAA-----ESSRLSLARIGIDALPGDLTASNRVTHITVLDLKHNALQMLPSELFLCVTQLEEVDASKNRISYLPETIGLATGLRKLNLQ 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2022.5220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C9_ECTSI1.050e-1245.45Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 72..93
e-value: 53.0
score: 7.3
coord: 140..162
e-value: 0.79
score: 18.8
coord: 94..115
e-value: 140.0
score: 3.9
coord: 163..187
e-value: 35.0
score: 8.8
coord: 117..138
e-value: 0.12
score: 21.5
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 140..159
e-value: 110.0
score: 5.7
coord: 117..136
e-value: 18.0
score: 11.8
coord: 94..113
e-value: 120.0
score: 5.4
coord: 163..183
e-value: 300.0
score: 2.5
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 71..151
NoneNo IPR availablePANTHERPTHR16083:SF22coord: 93..174
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 93..174
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 140..226
NoneNo IPR availablePANTHERPTHR16083:SF22coord: 71..151
NoneNo IPR availablePANTHERPTHR16083:SF22coord: 140..226
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 48..203
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 7..228
e-value: 4.4E-35
score: 122.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 72..130
e-value: 9.4E-10
score: 38.1
coord: 142..198
e-value: 2.6E-7
score: 30.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 119..140
score: 7.442
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 142..163
score: 6.842
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 96..117
score: 5.864
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 72..93
score: 6.018
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 165..187
score: 5.764

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2022contigH-paniculata_contig2022:1746..6814 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2022.5220.1mRNA_H-paniculata_contig2022.5220.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2022 1733..6915 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2022.5220.1 ID=prot_H-paniculata_contig2022.5220.1|Name=mRNA_H-paniculata_contig2022.5220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MLLVDRALTHDDAVNHRQGKGGTKLRNIKINSREEASALTGGITTDHVSR
LVISGLDLDALPDVLLSEKHDSLAVLHLQRNALVLLPSELFLNLKGLQEL
DGSENRLSYIPETIGTLSNLRKLRLRGNQLRDLPDGICRLRALQELDLSQ
NPLEVLPAGIGMLQRLTRMDLSDNSCLQEIPDEAGQLLALDHINLKGTPV
IRMPLAIQRLKTKGELLRCKALRRKLVGRALHIRSSVRRAFLEEALML*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt