mRNA_H-paniculata_contig1081.522.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1081.522.1 vs. uniprot
Match: A0A6H5KRP0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP0_9PHAE) HSP 1 Score: 104 bits (259), Expect = 6.710e-19 Identity = 87/214 (40.65%), Postives = 114/214 (53.27%), Query Frame = 3
Query: 1341 LDWTSKSLPRTPYGVPLLLSCLSTHPDKVAAALHPNIPSSSSPPLPPPPLAGRSVIKPDSAVIGSSSVLSLSLSTGEEKTHDSDKHKEC--WESRESKQVNGESMDVERDEESGCGWGLASGLSSELMPELRRAEKLRQATFEARARCEQAESVARLYVEACKTV----VVTEHGRGAANRLKSAFREDRQQEEQAEWEREVEELQEAILKAAP 1964
LDW S +PRTPYGVPLLLSCLST+PDK+AAAL+P+ PSS P AG + +G + S G S EC WE LSS+L+P LR+ E +R+AT + RARCEQ ESV R+Y EA K+V V H AA +LK+ FR +RQ+ E+ W +E++E++EA+ KA P
Sbjct: 1035 LDWPSTVIPRTPYGVPLLLSCLSTYPDKLAAALYPS-PSSR-------PNAGGEA----TTTVGVAETEPPG-SEGXXXGCSSGSTSECSEWE-----------------------------LSSKLLPNLRQQELVREATLQDRARCEQTESVCRMYAEASKSVAEPRVSAAH---AAVKLKTVFRAERQEAERLLWRQELKEMEEAVAKAMP 1203
BLAST of mRNA_H-paniculata_contig1081.522.1 vs. uniprot
Match: D8LJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU4_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 5.080e-16 Identity = 179/688 (26.02%), Postives = 260/688 (37.79%), Query Frame = 3
Query: 75 QLMEFEERREELELQQILVEDRTRERRMTFRRERMMGDAIIRYLQVLEQEERKGMAILSRKGQMLQDLVQMLPERREEMDALNQQLEILK-----SNTNTNTSTNKTIIDSCTSKSSSCFHPHNKPEMGGGAAAADFGQVSRATDKSERLDEVT-------------DEMTDGMTPKVDFL-------GKGKEKERTVDGT--GVYLKDTVKNRGAKDHA--------------LFSSLHGETNAAGSGGAG---VVGVH-DTHSMTGETMLRAWYTMEELINVAKVAVKNLDVEKEASAVQFTVTEESLTASALAGREDDGRMT-----TRRRANLRATAAS--LRSGKKGDAIELEAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPGDGKASFTSGGGRFKIPTAEKPHKTAPKAAGGXXXXXXXXXGKKRKGDSADRLVEKKTKTKGSAKGKAIRKCHAPTGTM--LDWTSKSLPRTPYGVPLLLSCLSTHPDKVAAALHPNIPSSSSPPLPPPPLAGRSVIKPDSAVIGSSSVLSLSLSTGEEKTHDSDKHKECWESRESKQVNGESMDVERDEESGCGWGLASGLSSELMPELRRAEKLRQATFEARARCEQAESVARLYVEACKTV----VVTEHGRGAANRLKSAFREDRQQEEQAEWEREVEELQEAILKAAP 1964
++ME++ RR+ LEL++I++ +RTRERR RE+ G A+++YL LE+EER +L KG ML D+ +MLPER +EM L +++ + S TN N + T++SS G G+ A + S+A+ SE T D + G T GKGK + R D G K V + A+D T + G +G ++G + D H++T ++MLR W + E + A+ V+ ++ +DGR R +R RS K G+A++++ + SP G A G R + P A XXXXXXXXX A + LDW S +PRTPY VPLLLSCLST+PDK S WE LSS+L+P LR+ E +R+A + RARCEQ ESV+R+Y EA K+V V H AA +LK+ FR +RQ+ E+ W +E++E++EA+ KA P
Sbjct: 285 EVMEWDARRDALELKEIMIAERTRERRRGLMREQAKGQAVVQYLTKLEREERGRSNLLRAKGLMLADVARMLPERVKEMIELRNKIDKISQGLGGSGTNDNNGXXXXXXKAGTAESSV-----EGTAAGTGSLAGEAKNKSKASRASEGSTNATANTQRTSPSSSGFDMASAGATTPGSSACSDGKDKGKGKARRRNDDNGKGGESAKSGVVDSMAEDEGEQEASXXXXXXXXXXXXXXFAATPSCGDDASGEGLLLGSNPDVHALTAQSMLRCWNAVRERLAAARNVVREVNAGXXXXXXXXXXXXXXXXXXXXXXXAEDGRPRGVGGGKGPRGGIRPAGGGGRARSRKGGEAVDMDVDSDVSSCDESNNDN--------------------SPPRGAAH---GQQRNATRKRKASRVLGPSNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVVPVERLDWPSTVIPRTPYAVPLLLSCLSTYPDKGGXXXXXXXXXSE------------------------------------------------WE-----------------------------LSSKLLPSLRQQELVREANLQDRARCEQTESVSRMYAEASKSVAEPRVSAAH---AAVKLKTVFRAERQEAERLLWRQELKEMEEAVAKAMP 864 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1081.522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1081.522.1 >prot_H-paniculata_contig1081.522.1 ID=prot_H-paniculata_contig1081.522.1|Name=mRNA_H-paniculata_contig1081.522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=817bp MEFEERREELELQQILVEDRTRERRMTFRRERMMGDAIIRYLQVLEQEERback to top mRNA from alignment at H-paniculata_contig1081:2..11731- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1081.522.1 ID=mRNA_H-paniculata_contig1081.522.1|Name=mRNA_H-paniculata_contig1081.522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11730bp|location=Sequence derived from alignment at H-paniculata_contig1081:2..11731- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1081:2..11731- >mRNA_H-paniculata_contig1081.522.1 ID=mRNA_H-paniculata_contig1081.522.1|Name=mRNA_H-paniculata_contig1081.522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4902bp|location=Sequence derived from alignment at H-paniculata_contig1081:2..11731- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |