prot_H-paniculata_contig20218.5219.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20218.5219.1
Unique Nameprot_H-paniculata_contig20218.5219.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length343
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20218.5219.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 238..270
e-value: 0.0013
score: 28.1
coord: 202..233
e-value: 43.0
score: 13.0
coord: 128..160
e-value: 9.1E-4
score: 28.5
coord: 165..197
e-value: 8.7E-4
score: 28.6
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 119..333
e-value: 2.1E-27
score: 95.9
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 62..239
e-value: 2.2E-28
score: 101.2
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 158..331
coord: 122..284
NoneNo IPR availablePANTHERPTHR13068:SF90MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 122..284
NoneNo IPR availablePANTHERPTHR13068:SF90MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 158..331

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20218contigH-paniculata_contig20218:194..3815 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20218.5219.1mRNA_H-paniculata_contig20218.5219.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20218 108..4138 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20218.5219.1 ID=prot_H-paniculata_contig20218.5219.1|Name=mRNA_H-paniculata_contig20218.5219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MFFVSSARPPVVPCYWEPSSPWGLLANTPPVCVLSVPQTPTRQRPRHSSG
IIVDCSSSNSGGYGPRMSVASPAELTIDWLESRMGLDAREARDLADRYPP
IRRDSMEKLEMRLVWLQKRLALDDAQVSKMAAAFPWLFQYTVEDNLEPKL
QWLQSRLGLDDADLGRMLMVMPTILGLSIEGNMKPKLRWLEETLGIDAAS
SAKMVVRCPSIFAHAEANLGTKVGFLKEDLCLGRRSVVRILRSHPHVLSH
SIDANLKPKVEWLRARLDLDLRGVAKVISAYPGVFTRTAAYLDGKLSWLR
DFFAIDSARAKRVMAANPVLFSLSTASMEAKVTKNNTYKKPT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf