mRNA_H-paniculata_contig20218.5219.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20218.5219.1
Unique NamemRNA_H-paniculata_contig20218.5219.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20218.5219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20218contigH-paniculata_contig20218:108..4138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_001000.1
Exons2
Model size1438
Cds size1029
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20218.5219.1prot_H-paniculata_contig20218.5219.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20218 194..3815 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929521.976552-UTR-H-paniculata_contig20218:107..1931622929521.976552-UTR-H-paniculata_contig20218:107..193Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20218 108..193 +
1691480897.012384-UTR-H-paniculata_contig20218:107..1931691480897.012384-UTR-H-paniculata_contig20218:107..193Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20218 108..193 +
1622929522.0249891-UTR-H-paniculata_contig20218:3815..41381622929522.0249891-UTR-H-paniculata_contig20218:3815..4138Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20218 3816..4138 +
1691480897.044801-UTR-H-paniculata_contig20218:3815..41381691480897.044801-UTR-H-paniculata_contig20218:3815..4138Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20218 3816..4138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929521.9913542-CDS-H-paniculata_contig20218:193..9701622929521.9913542-CDS-H-paniculata_contig20218:193..970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20218 194..970 +
1691480897.0250008-CDS-H-paniculata_contig20218:193..9701691480897.0250008-CDS-H-paniculata_contig20218:193..970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20218 194..970 +
1622929522.0046976-CDS-H-paniculata_contig20218:3563..38151622929522.0046976-CDS-H-paniculata_contig20218:3563..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20218 3564..3815 +
1691480897.0361662-CDS-H-paniculata_contig20218:3563..38151691480897.0361662-CDS-H-paniculata_contig20218:3563..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20218 3564..3815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20218.5219.1

>prot_H-paniculata_contig20218.5219.1 ID=prot_H-paniculata_contig20218.5219.1|Name=mRNA_H-paniculata_contig20218.5219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MFFVSSARPPVVPCYWEPSSPWGLLANTPPVCVLSVPQTPTRQRPRHSSG
IIVDCSSSNSGGYGPRMSVASPAELTIDWLESRMGLDAREARDLADRYPP
IRRDSMEKLEMRLVWLQKRLALDDAQVSKMAAAFPWLFQYTVEDNLEPKL
QWLQSRLGLDDADLGRMLMVMPTILGLSIEGNMKPKLRWLEETLGIDAAS
SAKMVVRCPSIFAHAEANLGTKVGFLKEDLCLGRRSVVRILRSHPHVLSH
SIDANLKPKVEWLRARLDLDLRGVAKVISAYPGVFTRTAAYLDGKLSWLR
DFFAIDSARAKRVMAANPVLFSLSTASMEAKVTKNNTYKKPT*
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mRNA from alignment at H-paniculata_contig20218:108..4138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20218.5219.1 ID=mRNA_H-paniculata_contig20218.5219.1|Name=mRNA_H-paniculata_contig20218.5219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4031bp|location=Sequence derived from alignment at H-paniculata_contig20218:108..4138+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAGTTGTGTACATTTGTCAAAAAATATAGTAGCGACCTCAGCTGGAG
GAGCAGGAGCAACAGCCAGCCATCATTATCATTATCATGTTTTTTGTCTC
GTCGGCGAGGCCTCCCGTGGTCCCTTGCTACTGGGAACCGTCGTCTCCCT
GGGGTCTGCTCGCCAACACCCCCCCGGTATGCGTCTTGTCAGTCCCTCAA
ACCCCAACCCGTCAACGTCCTCGACATAGCAGTGGCATAATTGTCGATTG
CAGTAGCAGTAACAGCGGCGGCTATGGCCCTCGCATGAGCGTGGCTTCAC
CAGCCGAGCTAACGATTGACTGGTTGGAAAGTCGTATGGGGCTGGACGCT
CGGGAGGCGAGAGATCTTGCGGACAGATACCCGCCGATTCGGCGGGACAG
TATGGAAAAGCTGGAAATGCGGCTCGTTTGGTTGCAGAAGCGACTGGCGT
TGGACGATGCGCAGGTCTCCAAAATGGCCGCCGCGTTTCCCTGGTTATTC
CAGTATACTGTGGAGGATAACCTAGAGCCTAAGTTGCAGTGGTTGCAGTC
GAGGTTGGGATTGGACGATGCCGACTTGGGGAGGATGCTCATGGTGATGC
CCACTATTTTGGGGCTTAGTATTGAAGGTAACATGAAGCCCAAGTTACGA
TGGCTGGAGGAAACGCTGGGGATCGACGCGGCGAGCTCGGCGAAGATGGT
GGTCCGGTGTCCGAGCATTTTCGCGCACGCAGAGGCTAACCTGGGGACCA
AAGTGGGTTTTCTGAAGGAGGATTTGTGTCTGGGTCGACGGTCCGTGGTG
AGGATACTTCGGAGTCACCCGCATGTTTTGTCGCACAGTATCGACGCCAA
CCTTAAGCCCAAGGTGAGATTTTTTTTTTCCAAGTTTGGAGAAAGAGAGA
GGGGGGTTGGTTTAACTCGGTTGGGCTTCGGTTTGTCTGTACACAAACCC
CACCTACTGGGCGGGGGGGATACGAAGACTTTAGCGTGATTCTGACGGGG
ATAGGTAAACGCCACTGTTAAGATAGCCAGTCCAGTACAGACAGTCAGTC
AATAATGACAGCATATACAGGGAGTTGGCATAGTTATGCGCACAACTACA
GTACTAGCCCTAATCCTATGCACGACATTTAAATATCAAATATATATTTT
CCGAAATAAGTAACTTTCTAGCGCCCAGAGGGTTGGATAGGTTATACTGG
AGGGGATGATTGCACCCTCCAGGATTACACCGAGCAAGAAAACCGCACAG
TGATGGCTGTATTACATGTCTCGAAAACGAGCACAACAGCAATTTATCAT
AAGGCATTATTAGACGATAAAGGATAAGAAGAACATGGGCAGATTTAAGG
AGGAATTAGCCGGTGCAATCAAGAGAACAACAAAGACTAGGAAGAGAAGC
TGCAAGTAAGGAAGGTTTGGAAGTATATGGAAGGCTGGATGAAGGGATAG
GGTTGAAGGAGTACCTACGTGGTACCATTAGACGCAGGCACACGGTTGAA
AGTCAAAATTTAGGACAGAGGATCTTGATCTCAATAGCGTAGGAAGTGAT
TCAGAAAAGCAGACGAGGACGACGACGATATGTTCAAGTGTAACTGCGGT
AGACCGTGCGAGAATCGAATTCATATTGTGGGAGAACACCCTCTATTTAT
GAGTGAAATGAGGGAACATCGGAAAACACGATAGAGGTGTTTGAATCCTG
GGTTTGCGAAAAGAAGGCCAAAGCTATTCTAGGAGATGGAAAATTGGCCT
GAACACGCGAGGGTTGACGAAAATAGGGTATAGATACAACGTTTTTGAGT
CATATTTGACAAAGTAGGAGATTACGATTGGTCATTATCCATCGGAAATC
GCTCTGATCAGAAAAAAGTTCCGTCCTCCCGAGGGCCCATGGTCAACGGT
CTAATAACTACGATATGCCAAAAGATGAGTACGCCTCCTTCCCTTCCCCC
TGCCTAGTGGTCATGATCTAATTTCACTTATTAGTGCGTCTAACCCAGAT
TTACATTGGCTAAACAGCCTCAGCATTTATGTATAAATCGAGACAGAGCC
AAAGTCGATCTCGATATAAGGTTATGCTCCAAAGGTGAATTGAGCCCCCG
ATGTTGCAGGATAAATGTGAGGCAAGTTTGGCCCGAGGCAATGTGTGATC
CGCGTGCTACATAGTTCAGGCAGCGAAAATCACCGATGATCGTCCCCTTA
CTTAGCCATCCATCCTGTGCTCGCTGTGCCCAAACGAACGTCGCGCCCTT
AGAAAGCGAGAAATCAAGCGCACAAAAACACAACATTACAAGCAGTGATC
GCCACCCCATCTGCCCACGTCAACTCCCGTACAGCGGTACGCAGTTACCC
ACACCACACTTAAGCGGCATTCGGACGAACACGTTGTATACGTCGGATGA
GGGCCGGTACCGTAAAGCGTCAAACGCCACAACTTCCAAAAGCAGCACCA
GTATGGAACAAACGCCAACGGGACCAGCCTACAAGATGAAATATCTTATT
ATGCCGATTTAGTACAGATGGAGAGAGCGGAAAAACGAAGAAAAACGCCC
GTAATTTTTGGCATTTCTCACGCCGTTTTTTAGAGTCAGGTCATGAAAGT
TTTTGCAAACATATTCCTTACTTGATGGCTGGGGTCGTGTGCCCCGTTTT
GGCCTTTTTTGACTGATTTTTTGGAGTCGCAAAGTGATGCCAACGTTGGT
GAGGGCACTAGGATCTCCTTAAAACTGGTGAAACGACAGCGAAACTTGAA
ACATGAAACAGCTGGCGACGTTCGGGAATAAAGTGAGGAACACGTGTCTA
AAGTTTCACTTCCAAATTCGGAAAAAAAAAAAAAAAAATGGTGTTTATAC
AATCCAAAAACAACGCCTTCTTTAACATGATTTTTCTAAAACATCGGTAA
ATCAGTATAAAAAAGGCATTCATTCATTTCTTCACCTTGAACGCGGACCC
CGCTGACGTTTGAGTCATTTCTCATGGATTTTTTTTGAGAATTATGAAAT
GTCATGAAATTTTGCGCACATTTTCGTTACTCGATTCTCAGGGCTGCCAG
TCCTTGTTTTTTTGGGTTTTTTTCGCTTTCCTTCAACGGTTATGTGGGGT
CCCACGGTGTTCTTTTACCCCCCCCCCAAATTTTCGTTGGACCCCAAACA
ACCGGCTAAACATAAAACAACGTCAAAAATAGGCCAAAGACTGGCGACCT
CGAGAATCAAGGAACACGTATGCAAAATTTTCATGAAGTAACTTGAAAAC
GCCGTGAAAAATGGAGGATGATAAAATATATGTTTGCTTCCGAGAATCAG
CCTGTAACCGCGAGTCTTGGTGGTGGGCGATTGAACGCTTAACAAAAATA
TGTCGTAAAAGAACAAGCAAGTAAACGAAGAAGGGATTCAATCACCTTTT
GACGTATCGCGAACTCCTTGCGCTCGCTCGTGTGTTTGTTGTATTGAATG
ATTCAGGTGGAGTGGCTGCGTGCGAGGCTGGACTTGGACCTGAGGGGCGT
TGCAAAAGTTATCTCTGCGTATCCTGGTGTGTTCACGCGAACCGCGGCCT
ATTTGGACGGGAAGTTGTCGTGGTTGCGAGATTTCTTTGCGATTGACTCT
GCGAGAGCGAAGCGAGTGATGGCCGCGAATCCCGTTTTGTTTTCTCTCAG
CACCGCGAGTATGGAGGCCAAGGTAACAAAAAATAACACATATAAAAAGC
CTACTTAATTGTCCAATGATTTATTCAAGATTAGTTTGTCTGTTATGGGT
GGCTTCTGCTTATTAAAAAAAACGACAGCAGGGAACGCCGTTTTTTTTTT
TATTTTATCACCTTTGGCAGATTTTTTGGAAGGCGTTTTCCGAAGAAGCA
GCTTCCGTCCCTCCCTCCCTGTATTTTTATAATGTTGCTGACAAGTGTAA
AACTACTTGAATTTGAAGCCAGCTGGATAAACCTCAAGATGGGGTACAAT
GAGGTTACTATACGAGCTTCAGAGCTATATTTCAACTATCTGCGGCAGGT
TTCAAAATTGCCCCTCTCGATCACCCCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig20218:108..4138+

>mRNA_H-paniculata_contig20218.5219.1 ID=mRNA_H-paniculata_contig20218.5219.1|Name=mRNA_H-paniculata_contig20218.5219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at H-paniculata_contig20218:108..4138+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTTGTCTCGTCGGCGAGGCCTCCCGTGGTCCCTTGCTACTGGGA
ACCGTCGTCTCCCTGGGGTCTGCTCGCCAACACCCCCCCGGTATGCGTCT
TGTCAGTCCCTCAAACCCCAACCCGTCAACGTCCTCGACATAGCAGTGGC
ATAATTGTCGATTGCAGTAGCAGTAACAGCGGCGGCTATGGCCCTCGCAT
GAGCGTGGCTTCACCAGCCGAGCTAACGATTGACTGGTTGGAAAGTCGTA
TGGGGCTGGACGCTCGGGAGGCGAGAGATCTTGCGGACAGATACCCGCCG
ATTCGGCGGGACAGTATGGAAAAGCTGGAAATGCGGCTCGTTTGGTTGCA
GAAGCGACTGGCGTTGGACGATGCGCAGGTCTCCAAAATGGCCGCCGCGT
TTCCCTGGTTATTCCAGTATACTGTGGAGGATAACCTAGAGCCTAAGTTG
CAGTGGTTGCAGTCGAGGTTGGGATTGGACGATGCCGACTTGGGGAGGAT
GCTCATGGTGATGCCCACTATTTTGGGGCTTAGTATTGAAGGTAACATGA
AGCCCAAGTTACGATGGCTGGAGGAAACGCTGGGGATCGACGCGGCGAGC
TCGGCGAAGATGGTGGTCCGGTGTCCGAGCATTTTCGCGCACGCAGAGGC
TAACCTGGGGACCAAAGTGGGTTTTCTGAAGGAGGATTTGTGTCTGGGTC
GACGGTCCGTGGTGAGGATACTTCGGAGTCACCCGCATGTTTTGTCGCAC
AGTATCGACGCCAACCTTAAGCCCAAGATGTTTTTTGTCTCGTCGGCGAG
GCCTCCCGTGGTCCCTTGCTACTGGGAACCGTCGTCTCCCTGGGGTCTGC
TCGCCAACACCCCCCCGGTATGCGTCTTGTCAGTCCCTCAAACCCCAACC
CGTCAACGTCCTCGACATAGCAGTGGCATAATTGTCGATTGCAGTAGCAG
TAACAGCGGCGGCTATGGCCCTCGCATGAGCGTGGCTTCACCAGCCGAGC
TAACGATTGACTGGTTGGAAAGTCGTATGGGGCTGGACGCTCGGGAGGCG
AGAGATCTTGCGGACAGATACCCGCCGATTCGGCGGGACAGTATGGAAAA
GCTGGAAATGCGGCTCGTTTGGTTGCAGAAGCGACTGGCGTTGGACGATG
CGCAGGTCTCCAAAATGGCCGCCGCGTTTCCCTGGTTATTCCAGTATACT
GTGGAGGATAACCTAGAGCCTAAGTTGCAGTGGTTGCAGTCGAGGTTGGG
ATTGGACGATGCCGACTTGGGGAGGATGCTCATGGTGATGCCCACTATTT
TGGGGCTTAGTATTGAAGGTAACATGAAGCCCAAGTTACGATGGCTGGAG
GAAACGCTGGGGATCGACGCGGCGAGCTCGGCGAAGATGGTGGTCCGGTG
TCCGAGCATTTTCGCGCACGCAGAGGCTAACCTGGGGACCAAAGTGGGTT
TTCTGAAGGAGGATTTGTGTCTGGGTCGACGGTCCGTGGTGAGGATACTT
CGGAGTCACCCGCATGTTTTGTCGCACAGTATCGACGCCAACCTTAAGCC
CAAGGTGGAGTGGCTGCGTGCGAGGCTGGACTTGGACCTGAGGGGCGTTG
CAAAAGTTATCTCTGCGTATCCTGGTGTGTTCACGCGAACCGCGGCCTAT
TTGGACGGGAAGTTGTCGTGGTTGCGAGATTTCTTTGCGATTGACTCTGC
GAGAGCGAAGCGAGTGATGGCCGCGAATCCCGTTTTGTTTTCTCTCAGCA
CCGCGAGTATGGAGGCCAAGGTAACAAAAAATAACACATATAAAAAGCCT
ACTTAAGTGGAGTGGCTGCGTGCGAGGCTGGACTTGGACCTGAGGGGCGT
TGCAAAAGTTATCTCTGCGTATCCTGGTGTGTTCACGCGAACCGCGGCCT
ATTTGGACGGGAAGTTGTCGTGGTTGCGAGATTTCTTTGCGATTGACTCT
GCGAGAGCGAAGCGAGTGATGGCCGCGAATCCCGTTTTGTTTTCTCTCAG
CACCGCGAGTATGGAGGCCAAGGTAACAAAAAATAACACATATAAAAAGC
CTACTTAA
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