mRNA_H-paniculata_contig20215.5218.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20215.5218.1
Unique NamemRNA_H-paniculata_contig20215.5218.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20215.5218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20215contigH-paniculata_contig20215:3332..3827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size496
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929521.8389492-CDS-H-paniculata_contig20215:3331..37241622929521.8389492-CDS-H-paniculata_contig20215:3331..3724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20215 3332..3724 +
1691480896.9836411-CDS-H-paniculata_contig20215:3331..37241691480896.9836411-CDS-H-paniculata_contig20215:3331..3724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20215 3332..3724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929521.8538342-UTR-H-paniculata_contig20215:3724..38271622929521.8538342-UTR-H-paniculata_contig20215:3724..3827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20215 3725..3827 +
1691480897.0009797-UTR-H-paniculata_contig20215:3724..38271691480897.0009797-UTR-H-paniculata_contig20215:3724..3827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20215 3725..3827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20215.5218.1prot_H-paniculata_contig20215.5218.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20215 3332..3724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20215.5218.1

>prot_H-paniculata_contig20215.5218.1 ID=prot_H-paniculata_contig20215.5218.1|Name=mRNA_H-paniculata_contig20215.5218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
RATSKGVTLYVNRIRVPPQGGTALCRIKALYIALPHGTRHAVHDKYIQIT
LAVLFFVILIVSRKKTFFCFFFVFFPWYRLISHAYFSTGTNRCAQGSCKD
VTRWTVLDSTGQDRTGHERIVCTEVSVPPS*
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mRNA from alignment at H-paniculata_contig20215:3332..3827+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20215.5218.1 ID=mRNA_H-paniculata_contig20215.5218.1|Name=mRNA_H-paniculata_contig20215.5218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=496bp|location=Sequence derived from alignment at H-paniculata_contig20215:3332..3827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCGACGTCAAAGGGTGTTACTTTGTATGTAAATAGAATCAGGGTCCC
GCCACAGGGCGGTACCGCATTATGCCGGATCAAAGCCCTGTATATTGCTC
TACCACACGGTACAAGACATGCCGTGCACGATAAATATATACAAATCACC
CTTGCGGTGTTGTTTTTTGTTATCTTGATTGTATCGAGAAAGAAAACGTT
TTTTTGTTTTTTTTTTGTTTTTTTCCCTTGGTACAGATTGATCAGTCATG
CCTATTTCTCCACAGGTACTAATAGGTGCGCTCAGGGGTCCTGCAAAGAT
GTCACACGTTGGACAGTACTGGACAGTACGGGACAGGATAGGACAGGACA
CGAAAGAATCGTATGTACCGAAGTTAGTGTACCGCCATCCTAGATATAAG
TTCTAGAACAATCCATGCTGTTGTGTCGATTTACTCGGCACGAGGAAGGT
TTCTGGCTGTGCTTCGTTTGGTCTACTAGGAAACGCTGCTGTACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20215:3332..3827+

>mRNA_H-paniculata_contig20215.5218.1 ID=mRNA_H-paniculata_contig20215.5218.1|Name=mRNA_H-paniculata_contig20215.5218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig20215:3332..3827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCGACGTCAAAGGGTGTTACTTTGTATGTAAATAGAATCAGGGTCCC
GCCACAGGGCGGTACCGCATTATGCCGGATCAAAGCCCTGTATATTGCTC
TACCACACGGTACAAGACATGCCGTGCACGATAAATATATACAAATCACC
CTTGCGGTGTTGTTTTTTGTTATCTTGATTGTATCGAGAAAGAAAACGTT
TTTTTGTTTTTTTTTTGTTTTTTTCCCTTGGTACAGATTGATCAGTCATG
CCTATTTCTCCACAGGTACTAATAGGTGCGCTCAGGGGTCCTGCAAAGAT
GTCACACGTTGGACAGTACTGGACAGTACGGGACAGGATAGGACAGGACA
CGAAAGAATCGTATGTACCGAAGTTAGTGTACCGCCATCCTAGCGGGCGA
CGTCAAAGGGTGTTACTTTGTATGTAAATAGAATCAGGGTCCCGCCACAG
GGCGGTACCGCATTATGCCGGATCAAAGCCCTGTATATTGCTCTACCACA
CGGTACAAGACATGCCGTGCACGATAAATATATACAAATCACCCTTGCGG
TGTTGTTTTTTGTTATCTTGATTGTATCGAGAAAGAAAACGTTTTTTTGT
TTTTTTTTTGTTTTTTTCCCTTGGTACAGATTGATCAGTCATGCCTATTT
CTCCACAGGTACTAATAGGTGCGCTCAGGGGTCCTGCAAAGATGTCACAC
GTTGGACAGTACTGGACAGTACGGGACAGGATAGGACAGGACACGAAAGA
ATCGTATGTACCGAAGTTAGTGTACCGCCATCCTAG
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