mRNA_H-paniculata_contig20214.5217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20214.5217.1
Unique NamemRNA_H-paniculata_contig20214.5217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: UPI000C9D9189 (mitogen-activated protein kinase kinase kinase 17-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D9189)

HSP 1 Score: 55.8 bits (133), Expect = 1.370e-7
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   13 RFMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTA-GATLCAKVADFGLSMREYDQRH 198
            R+ + + KGL+  H +G+VH DLK ANILL     P +TA GA L AK+ D GL+ R  + RH
Sbjct:   79 RYTKTIIKGLIHIHRRGYVHCDLKPANILLL----PTNTAKGARLVAKICDLGLARRGSETRH 137          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: A0A4Q4QH92_9PLEO (Protein kinase domain-containing protein n=1 Tax=Alternaria gaisen TaxID=167740 RepID=A0A4Q4QH92_9PLEO)

HSP 1 Score: 55.1 bits (131), Expect = 3.800e-7
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   13 RFMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKVADFGLSMREYDQ 192
            RF  +VA GL   HE GFVHGDLK ANIL+ ++ +          AK+ADFG S  E +Q
Sbjct:  230 RFCSDVANGLEAIHEAGFVHGDLKPANILVFRKATG-------FVAKLADFGFSANEKEQ 282          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: A0A6J1GPL4_CUCMO (mitogen-activated protein kinase kinase kinase 17-like n=2 Tax=Cucurbita TaxID=3660 RepID=A0A6J1GPL4_CUCMO)

HSP 1 Score: 54.7 bits (130), Expect = 4.890e-7
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   13 RFMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTA-GATLCAKVADFGLSMREYDQRH 198
            R+ + + KGL+  H +G+VH DLK ANILL     P +TA G  L AK+ D GL+ R  + RH
Sbjct:  136 RYTKTIIKGLIHIHRRGYVHCDLKPANILLL----PTNTAKGGRLVAKICDLGLARRTSETRH 194          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: A0A150H1K4_GONPE (Protein kinase domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H1K4_GONPE)

HSP 1 Score: 54.7 bits (130), Expect = 5.120e-7
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   19 MEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKVADFGLS 174
            ++EV K L+F HE   +HGDLKAAN+LLS      DT      AKV+DFGLS
Sbjct:  148 LKEVTKALIFLHENRILHGDLKAANVLLSSS----DTDRRGFVAKVSDFGLS 195          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: W9SED7_9ROSA (Serine/threonine-protein kinase ppk4 n=2 Tax=Morus notabilis TaxID=981085 RepID=W9SED7_9ROSA)

HSP 1 Score: 54.3 bits (129), Expect = 6.910e-7
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    4 IMFRFMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKVADFGLSMR 180
            ++ + M ++  GLVF HE G VH DLK  N+L+ K+ S       T CAKV+D G+S +
Sbjct:  153 LLLKLMRDIVSGLVFLHELGMVHRDLKPQNVLILKEKS-------TFCAKVSDMGISRK 204          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: Y0146_DICDI (Probable serine/threonine-protein kinase DDB_G0270146 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Y0146_DICDI)

HSP 1 Score: 54.3 bits (129), Expect = 7.000e-7
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   16 FMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKVADFGLS---MREYDQRHS 201
            ++E V KGLV+ H++G +H D+KAANIL++K G           AK++DFG +   ++E D+R+S
Sbjct:  179 YVENVLKGLVYLHQEGVIHRDIKAANILINKAGE----------AKLSDFGTAGEIIKESDKRYS 233          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: L7FKZ6_ENTIV (Cell division control protein 15, CDC15, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=L7FKZ6_ENTIV)

HSP 1 Score: 53.9 bits (128), Expect = 9.710e-7
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   13 RFMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKVADFGLSMREYDQRH 198
            +++ ++  GL F HEQG VH D+KAANIL++K GS           K+ADFG+S++  + R+
Sbjct:  298 KYVYQILDGLSFIHEQGIVHRDIKAANILVAKDGS----------VKIADFGVSVQTDNTRN 349          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: A0A699YWP7_HAELA (Protein kinase domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YWP7_HAELA)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-6
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   19 MEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKVADFGLSMREYDQRH 198
            ++EV   L+F HE   +HGDLKAAN+LL+   S  D  G    AKVADFGL+    D+ H
Sbjct:   38 LKEVVSALIFLHEHKILHGDLKAANVLLASDES--DRRG--WIAKVADFGLARVLKDKNH 93          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: UPI000D0944A9 (probable serine/threonine-protein kinase DDB_G0277165 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D0944A9)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   13 RFMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKVADFGLSMR 180
            R+ + + KGL + H +GFVH D+K AN+LL + G P DT   +  AK+ D GL+ R
Sbjct:  135 RYTQSLLKGLKYIHGKGFVHCDIKPANVLLVRDG-PDDTGFGSYVAKIGDLGLAKR 189          
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Match: K2HII9_ENTNP (Serine/threonine protein kinase, putative n=1 Tax=Entamoeba nuttalli (strain P19) TaxID=1076696 RepID=K2HII9_ENTNP)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   13 RFMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKVADFGLSMR 180
            +++ +V  GL F H+QG VH D+KAANIL++K GS           K+ADFG+S++
Sbjct:  520 KYIHQVLDGLAFIHDQGIVHRDIKAANILVAKDGS----------VKIADFGVSVQ 565          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20214.5217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C9D91891.370e-747.62mitogen-activated protein kinase kinase kinase 17-... [more]
A0A4Q4QH92_9PLEO3.800e-748.33Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A6J1GPL4_CUCMO4.890e-746.03mitogen-activated protein kinase kinase kinase 17-... [more]
A0A150H1K4_GONPE5.120e-753.85Protein kinase domain-containing protein n=1 Tax=G... [more]
W9SED7_9ROSA6.910e-742.37Serine/threonine-protein kinase ppk4 n=2 Tax=Morus... [more]
Y0146_DICDI7.000e-741.54Probable serine/threonine-protein kinase DDB_G0270... [more]
L7FKZ6_ENTIV9.710e-741.94Cell division control protein 15, CDC15, putative ... [more]
A0A699YWP7_HAELA1.230e-648.33Protein kinase domain-containing protein n=1 Tax=H... [more]
UPI000D0944A91.310e-644.64probable serine/threonine-protein kinase DDB_G0277... [more]
K2HII9_ENTNP1.310e-644.64Serine/threonine protein kinase, putative n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20214contigH-paniculata_contig20214:3733..3936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size198
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929521.781482-UTR-H-paniculata_contig20214:3732..37381622929521.781482-UTR-H-paniculata_contig20214:3732..3738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20214 3733..3738 +
1691480896.95898-UTR-H-paniculata_contig20214:3732..37381691480896.95898-UTR-H-paniculata_contig20214:3732..3738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20214 3733..3738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929521.7943797-CDS-H-paniculata_contig20214:3738..39361622929521.7943797-CDS-H-paniculata_contig20214:3738..3936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20214 3739..3936 +
1691480896.9739463-CDS-H-paniculata_contig20214:3738..39361691480896.9739463-CDS-H-paniculata_contig20214:3738..3936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20214 3739..3936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20214.5217.1prot_H-paniculata_contig20214.5217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20214 3739..3936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20214.5217.1

>prot_H-paniculata_contig20214.5217.1 ID=prot_H-paniculata_contig20214.5217.1|Name=mRNA_H-paniculata_contig20214.5217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MFRFMEEVAKGLVFCHEQGFVHGDLKAANILLSKQGSPGDTAGATLCAKV
ADFGLSMREYDQRHS*
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mRNA from alignment at H-paniculata_contig20214:3733..3936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20214.5217.1 ID=mRNA_H-paniculata_contig20214.5217.1|Name=mRNA_H-paniculata_contig20214.5217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig20214:3733..3936+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTATCATGTTTAGGTTTATGGAGGAAGTGGCGAAAGGGTTGGTCTTCTG TCACGAGCAAGGTTTTGTTCATGGGGATCTGAAGGCAGCCAATATCCTCT TGTCGAAGCAGGGGAGCCCGGGAGATACTGCAGGAGCTACTCTCTGTGCT AAGGTCGCCGATTTCGGGTTGTCCATGCGTGAGTATGACCAAAGACACAG TTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20214:3733..3936+

>mRNA_H-paniculata_contig20214.5217.1 ID=mRNA_H-paniculata_contig20214.5217.1|Name=mRNA_H-paniculata_contig20214.5217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig20214:3733..3936+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAGGTTTATGGAGGAAGTGGCGAAAGGGTTGGTCTTCTGTCACGA
GCAAGGTTTTGTTCATGGGGATCTGAAGGCAGCCAATATCCTCTTGTCGA
AGCAGGGGAGCCCGGGAGATACTGCAGGAGCTACTCTCTGTGCTAAGGTC
GCCGATTTCGGGTTGTCCATGCGTGAGTATGACCAAAGACACAGTTGAAT
GTTTAGGTTTATGGAGGAAGTGGCGAAAGGGTTGGTCTTCTGTCACGAGC
AAGGTTTTGTTCATGGGGATCTGAAGGCAGCCAATATCCTCTTGTCGAAG
CAGGGGAGCCCGGGAGATACTGCAGGAGCTACTCTCTGTGCTAAGGTCGC
CGATTTCGGGTTGTCCATGCGTGAGTATGACCAAAGACACAGTTGA
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