mRNA_H-paniculata_contig20202.5213.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20202.5213.1
Unique NamemRNA_H-paniculata_contig20202.5213.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: D7G4E7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 7.800e-49
Identity = 78/92 (84.78%), Postives = 81/92 (88.04%), Query Frame = 1
Query:   22 MAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
            M+ LD   RR FLRF+TGTPRLPIGGF ALRPRLTVVKKEVDV  GGTPD+HLPSCSTCQVYLKLPAYTS  ALEAKL HAITEGQDHFALD
Sbjct:    1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 92          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.640e-47
Identity = 84/99 (84.85%), Postives = 88/99 (88.89%), Query Frame = 1
Query:    1 LKWLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
            +KWLARVM+ LD   RR FLRF+TGTPRLPIGGF ALRPRLTVVKKEVDV  GGTPD+HLPSCSTCQVYLKLPAYTS  ALEAKL HAITEGQDHFALD
Sbjct: 2260 VKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 2358          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A835Z7D6_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.470e-33
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 1
Query:   10 LARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
            L  V++ LD   RR FL F+TG+PRLP+GGF+AL+PRLTVV+K  D PR   PD HLPSCSTCQVYLKLPAYT    L AKLL AI EG++HFALD
Sbjct:  248 LVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRK--DTPR---PDEHLPSCSTCQVYLKLPAYTCKAVLRAKLLQAINEGREHFALD 338          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A2R5GSN0_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSN0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.610e-29
Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   10 LARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
            L  V++ LD   RR+F++F+TG+PRLP+GGF  LRPRLTVV+K V       PD  LPSCSTCQVYLKLP Y+S E L+ +LL A+ EGQ HFALD
Sbjct: 2703 LVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNV----ADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFALD 2794          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A482RGR4_9ARCH (HECT domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGR4_9ARCH)

HSP 1 Score: 99.0 bits (245), Expect = 4.390e-24
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   10 LARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
            L  V+       RR+F+RFITG PRLP GGF AL+P LT+V+           DA LP+CSTC VYLKLPAY+S   L AKLL AI EGQ+ FA D
Sbjct:   82 LLEVLHEFSAAERRLFMRFITGAPRLPSGGFGALQPPLTIVRTAAHDREEA--DALLPTCSTCHVYLKLPAYSSKTQLRAKLLLAIREGQEVFAFD 175          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A7S1CCF7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.130e-23
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 LKWLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
            ++ L  V++ LDP  RR FL F TG+PRLP+GGF+AL PRLT+V+K+  +P G +PDA LPS STC  YLKLP YTS E +  +L+ AIT+G   F L
Sbjct: 2026 VQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKK-PLP-GRSPDASLPSASTCTNYLKLPQYTSKEIMHERLVRAITDGAGAFHL 2121          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A183R5A5_9TREM (E3 ubiquitin-protein ligase n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183R5A5_9TREM)

HSP 1 Score: 97.4 bits (241), Expect = 3.450e-23
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 LKWLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
            ++ L  +M+   P  RR+F++F+TG+PRLP+GGF AL+P L +V K      G   D HLPS  TCQ YLKLP Y+S E + +KLL+AI EGQ+ F L
Sbjct:  108 IRLLFEIMSEFTPEQRRLFVQFVTGSPRLPVGGFRALKPPLKIVMKR---ETGENVDHHLPSVMTCQNYLKLPDYSSKELMLSKLLYAINEGQNAFHL 202          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A1I8J744_9PLAT (E3 ubiquitin-protein ligase n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8J744_9PLAT)

HSP 1 Score: 101 bits (252), Expect = 5.810e-23
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 LKWLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
            ++ L ++MAG D G RR FL+F+TG+PRLP+GG+ AL P LTVV K V+      PD++LPS +TC  YLKLP Y+SAE + AKL  A+ EGQ  F L
Sbjct: 1659 IRLLFQLMAGFDLGQRRSFLQFVTGSPRLPVGGWRALHPPLTVVVKRVEGE--DNPDSYLPSATTCVNYLKLPDYSSAEVMRAKLQQAMEEGQLAFHL 1754          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: Q75DK8_ASHGO (HECT-type E3 ubiquitin transferase n=2 Tax=Eremothecium TaxID=33170 RepID=Q75DK8_ASHGO)

HSP 1 Score: 101 bits (251), Expect = 7.880e-23
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   10 LARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGG-TPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
            L  VMA  D  HRR+FL+F+TG+P+LP+GGF  L+P LTVV K    P G  +PD +LPS  TC  YLKLP Y+S E L A+++HAI EG   F L
Sbjct: 1331 LIAVMAAFDQHHRRLFLQFLTGSPKLPVGGFKNLKPHLTVVLKH---PEGDLSPDQYLPSVMTCANYLKLPKYSSREVLRARIVHAIHEGSGAFLL 1423          
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: UPI0018851A27 (E3 ubiquitin-protein ligase TRIP12-like n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018851A27)

HSP 1 Score: 94.7 bits (234), Expect = 1.200e-22
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    7 WLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
            +L RV++ LD   RR FL F TG+PRLP+GGF AL P LTVV+K V+   G  PD +LPS  TC  YLKLP Y+SAE    +L  AI +G+  F L
Sbjct:   61 YLVRVLSRLDSQQRRHFLSFATGSPRLPVGGFRALAPPLTVVRKTVE--SGRRPDDYLPSVMTCVNYLKLPEYSSAEVTRRRLTTAINQGRLSFLL 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4E7_ECTSI7.800e-4984.78HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2P5_9PHAE1.640e-4784.85HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z7D6_9STRA1.470e-3366.67HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2R5GSN0_9STRA3.610e-2960.42HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea... [more]
A0A482RGR4_9ARCH4.390e-2455.21HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S1CCF7_9STRA3.130e-2355.10HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A183R5A5_9TREM3.450e-2350.00E3 ubiquitin-protein ligase n=1 Tax=Schistosoma ro... [more]
A0A1I8J744_9PLAT5.810e-2354.08E3 ubiquitin-protein ligase n=4 Tax=Macrostomum li... [more]
Q75DK8_ASHGO7.880e-2354.17HECT-type E3 ubiquitin transferase n=2 Tax=Eremoth... [more]
UPI0018851A271.200e-2253.13E3 ubiquitin-protein ligase TRIP12-like n=2 Tax=Po... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20202contigH-paniculata_contig20202:2106..3484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue3.5e-37
Seed eggNOG ortholog2880.D7G4E7
KEGG koko:K03874,ko:K10590
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of histone ubiquitination
EggNOG OGsCOG5021@1,KOG0170@2759
Ec32 ortholog descriptionHECT
Ec32 orthologEc-13_002660.1
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size300
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20202.5213.1prot_H-paniculata_contig20202.5213.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20202 2106..3463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929520.7706552-CDS-H-paniculata_contig20202:2105..22041622929520.7706552-CDS-H-paniculata_contig20202:2105..2204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20202 2106..2204 -
1691480896.7739763-CDS-H-paniculata_contig20202:2105..22041691480896.7739763-CDS-H-paniculata_contig20202:2105..2204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20202 2106..2204 -
1622929520.7814138-CDS-H-paniculata_contig20202:3283..34631622929520.7814138-CDS-H-paniculata_contig20202:3283..3463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20202 3284..3463 -
1691480896.7883642-CDS-H-paniculata_contig20202:3283..34631691480896.7883642-CDS-H-paniculata_contig20202:3283..3463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20202 3284..3463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929520.7938018-UTR-H-paniculata_contig20202:3463..34841622929520.7938018-UTR-H-paniculata_contig20202:3463..3484Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20202 3464..3484 -
1691480896.79864-UTR-H-paniculata_contig20202:3463..34841691480896.79864-UTR-H-paniculata_contig20202:3463..3484Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20202 3464..3484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20202.5213.1

>prot_H-paniculata_contig20202.5213.1 ID=prot_H-paniculata_contig20202.5213.1|Name=mRNA_H-paniculata_contig20202.5213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPD
AHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD*
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mRNA from alignment at H-paniculata_contig20202:2106..3484-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20202.5213.1 ID=mRNA_H-paniculata_contig20202.5213.1|Name=mRNA_H-paniculata_contig20202.5213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-paniculata_contig20202:2106..3484- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAAATGGCTGGCACGAGTGATGGCCGGGCTAGACCCTGGTCATCGCCG GATGTTTCTACGCTTCATCACGGGAACTCCCAGGCTTCCTATCGGGGGGT TCTCTGCTTTACGTCCCCGTCTGACGGTTGTGAAGAAAGAGGTTGATGTG CCGAGGGGAGGGACTCCAGATGCGCATCTTCCTAGTTGCTCGACTTGCCA GGTGTGTGCAGTGCTGATTGCCTGCTGTTTTTTGTCACTGCTTGCTTGTT GCTTTTTTTTCTTTATTGGCTTGGCCGGAGTTTTAGAAGCCAGGGTTGGG CTTGGGGTTACAATGGTATAGAATGAGTCATGACCACCGCTGGCGAATCA TTTTGGATATTGACTGCAGGAGCGACGGTAGATTGAACACGTCTCCGACA TAACATAACATACCATTACATTACATATCATATATCCTATCATATGATGT GGATGTTCGTCAGAACACAATACAAGAAAACAAAAATGTGCCACCGAAAC AGAATGTTCTATTCTATTCTATTATGTTCTATTCTATTCTGTTCTATTCT ATTATGTTCTATTCTGTTCTGTTCATGTATTCAGAACGAGGGCACGTTCT CTACCCCCGTTGGGTCAGTGACGAGCGTAGTTTCGTGCATTCGGATGGAA CTATACATAACGACGAGGACGTCGTTTTGTGCGACGTGCGAAACACACTG GATGCAGAGAATTTGATATATCCGAAGTGTGGTATTTTGAGGAAACTAGT AAAAACGCTTCAACCATGTATATGCACCCGAAAGCCTGAACGTCTCCGTC ACTTGGCGCGAACGGAAGAGCTGATCAGCCACCGCGCTGAACTGGCACGC ACGGGACCTGTTTCCTCATGGTAAAGCACCAGGCGCGCGTGCGGATGCGC GCGAGGAGGGGGTGGAGGGGGTGTCATATGGTAACATGTAGATCTACTCC TCACATTATAGCCAAATTGCGCGGCTTGTTTAGCTTGGTCATTCGTATTT GTTATCATTTGCTGCATCGTTGGGGAGGGGACACAGGGGAGGGGGATTCA TGTGTGATTGTTTTGTATCGGGTGTTGTTCGGTTTTTATGTCCTGGTTGT TGACCCTGGGAATTCTCGGATGCCGGGTTATGGTGCTTAACTACATCACC ACCAGTTTGACTGGGTTCACGCTTTTCTTTCGATGGTGAGTGAGATGTGA CTGTTTGTCATAATATGTGTACATGCTCTAAATGTTCCGTTCGTCATTTT TTGGAAAATGACCCTTTCGCGTAAAAACAGGTGTACCTTAAGCTGCCCGC ATACACATCTGCGGAGGCACTGGAGGCAAAGCTGCTGCACGCCATCACAG AGGGACAGGATCACTTCGCTCTTGATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20202:2106..3484-

>mRNA_H-paniculata_contig20202.5213.1 ID=mRNA_H-paniculata_contig20202.5213.1|Name=mRNA_H-paniculata_contig20202.5213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig20202:2106..3484- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGGGCTAGACCCTGGTCATCGCCGGATGTTTCTACGCTTCATCAC
GGGAACTCCCAGGCTTCCTATCGGGGGGTTCTCTGCTTTACGTCCCCGTC
TGACGGTTGTGAAGAAAGAGGTTGATGTGCCGAGGGGAGGGACTCCAGAT
GCGCATCTTCCTAGTTGCTCGACTTGCCAGATGGCCGGGCTAGACCCTGG
TCATCGCCGGATGTTTCTACGCTTCATCACGGGAACTCCCAGGCTTCCTA
TCGGGGGGTTCTCTGCTTTACGTCCCCGTCTGACGGTTGTGAAGAAAGAG
GTTGATGTGCCGAGGGGAGGGACTCCAGATGCGCATCTTCCTAGTTGCTC
GACTTGCCAGGTGTACCTTAAGCTGCCCGCATACACATCTGCGGAGGCAC
TGGAGGCAAAGCTGCTGCACGCCATCACAGAGGGACAGGATCACTTCGCT
CTTGATTAGGTGTACCTTAAGCTGCCCGCATACACATCTGCGGAGGCACT
GGAGGCAAAGCTGCTGCACGCCATCACAGAGGGACAGGATCACTTCGCTC
TTGATTAG
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