mRNA_H-paniculata_contig20194.5207.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: D8LMQ2_ECTSI (Rab8E, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ2_ECTSI) HSP 1 Score: 311 bits (798), Expect = 4.440e-99 Identity = 157/244 (64.34%), Postives = 195/244 (79.92%), Query Frame = 1
Query: 13 GFLSVGGGGNHRHGLRRGHQPPPRVHKIKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEAGEAGENGASARMAQTRKGKEIADKFGADFFECSAKTGCRVEDAFVTVTTKAFEVYMLKPPTPSGRSKRHSIRRRKHQRQTSQGSDKDRPPRSEAS 744
GFLSVGGG + +G RRGH P KIKLLMLGDSGVGKSSLM+RF ED F+ + V T GVD+KLK + +NDE V +QVWDTAGQQ+FHKITQAYYRGS+ IVLVYD+++P+TL N AYWM+SIRD A SNRVQICLVGNKVDLR+E G G+ A M +T G+++A++FGA++FECSAKTGC VE+AF+ TKA+E +++KP TPS R +R + R+KH+R SQGSD+DRPPRS+AS
Sbjct: 28 GFLSVGGG-SQPYGARRGHGGAPPARKIKLLMLGDSGVGKSSLMDRFMEDYFSITKVQTLGVDFKLKTIVLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDMSDPKTLDNTAYWMRSIRDTAGSNRVQICLVGNKVDLREEVGLEGQQQDLAGMVETSTGRKVAEEFGAEYFECSAKTGCMVEEAFIATATKAYEAHLVKPSTPSTRIRRR-LGRKKHRRTASQGSDRDRPPRSDAS 269
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: A0A6H5KJK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK4_9PHAE) HSP 1 Score: 309 bits (791), Expect = 3.940e-93 Identity = 156/248 (62.90%), Postives = 195/248 (78.63%), Query Frame = 1
Query: 1 SSVQGFLSVGGGGNHRHGLRRGHQPPPRVHKIKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEAGEAGENGASARMAQTRKGKEIADKFGADFFECSAKTGCRVEDAFVTVTTKAFEVYMLKPPTPSGRSKRHSIRRRKHQRQTSQGSDKDRPPRSEAS 744
SSVQGFLSVGGG + +G RGH P KIKLLMLGDSGVGKSSLM+RF ED F+ + V T GVD+KLK + +NDE V +QVWDTAGQQ+FHKITQAYYRGS+ IVLVYD+++P+TL N AYWM+SIRD A SNRVQICL+GNKVDLR+E G + + M +T G+++A++FGA++FECSAKTGC VE+AF+ TKA+E +++KP TPS R +R R+ KH+R SQGSD+DRPPR +AS
Sbjct: 914 SSVQGFLSVGGG-SQPYGAWRGHGGAPPARKIKLLMLGDSGVGKSSLMDRFMEDYFSITKVQTLGVDFKLKTIFLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDISDPKTLDNTAYWMRSIRDTAGSNRVQICLIGNKVDLREEVGREEQQQDLSGMVETSTGRKVAEEFGAEYFECSAKTGCMVEEAFIATATKAYEAHLVKPSTPSTRIRRRPGRK-KHRRTASQGSDRDRPPRGDAS 1159
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: A0A835YLY5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY5_9STRA) HSP 1 Score: 184 bits (466), Expect = 9.100e-54 Identity = 101/200 (50.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query: 91 KIKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEAGEAGEN----------------------GASARMAQ--TRKGKEIADKFGADFFECSAKTGCRVEDAFVTVTTKAFE 618
K+K+LMLGD+GVGKSSLM RFTED F VGT GVD+K++ + + E V+VQVWDTAGQ+RFHKIT+AYYRGS+ I+L YDV P TL NI+YW+ +I+DNA S V CLVGNK+DLR E AS + A T G+ IA ++G FFE SAKTG V AFV++ A E
Sbjct: 2 KVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALE 200
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: H6WB87_VAULI (Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB87_VAULI) HSP 1 Score: 186 bits (471), Expect = 2.480e-52 Identity = 96/203 (47.29%), Postives = 133/203 (65.52%), Query Frame = 1
Query: 43 HRHGLRRGHQPPPRVHKIKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEA---------GEAGENGASARMA--------QTRKGKEIADKFGADFFECSAKTGCRVEDAFVTV 600
HR+ R + KIK+LMLGD+GVGKSSL++RFT+D F+ VGT GVD+K++ + + E + VQVWDTAGQ+RFHKIT+AYY G I+L YDV P TL NI+YW+++IRDNA S V+ CLVGNK DL+ A A G+ + + +T G++IA+++G +FFE SAKTG V +AF+++
Sbjct: 239 HRNYNRHRPHRSENLRKIKILMLGDTGVGKSSLIQRFTDDTFHAGMVGTVGVDFKIRTMEVLGEKITVQVWDTAGQERFHKITRAYYHGCQGILLAYDVGEPGTLENISYWIKNIRDNA-SKDVRTCLVGNKADLKVRAISPYQLNWCVSASPQGSGRKRSWECPPVQVETESGQQIAEEYGVNFFEASAKTGYNVNEAFLSL 440
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: A0A7S1XMQ1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMQ1_9STRA) HSP 1 Score: 171 bits (432), Expect = 2.190e-48 Identity = 86/183 (46.99%), Postives = 125/183 (68.31%), Query Frame = 1
Query: 76 PPRVHKIKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTIND--ELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEAGEAGENGASARMAQTRKGKEIADKFGADFFECSAKTGCRVEDAFVTVTTKAFE 618
P + K K+LMLGDS VGK+SL+ RF ED F + VGT GVD+K+K + + E+ VQ+WDTAGQ+RFH+IT+ YYRG+NAI L +D ++ ++L N+ YW+Q+I+DNA S+ V + L NK+DLR+ + A+ R+G++IA ++G ++FE SAKTG VE +F + AFE
Sbjct: 94 PRHLKKFKILMLGDSAVGKTSLINRFVEDKFAHNLVGTVGVDFKMKRMWLGPTKEMCTVQIWDTAGQERFHRITKTYYRGANAIYLTFDCSSQDSLDNLEYWVQNIKDNA-SDDVLVLLAANKIDLRETESP---DKATEISGIVRRGQDIASQYGIEYFETSAKTGDGVEASFTRLADIAFE 272
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: A0A482RSH1_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSH1_9ARCH) HSP 1 Score: 169 bits (429), Expect = 4.590e-48 Identity = 86/188 (45.74%), Postives = 122/188 (64.89%), Query Frame = 1
Query: 85 VHKIKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEAGEAGENGASARMAQTRKGKEIADKFGADFFECSAKTGCRVEDAFVTVTTKAFEVYMLKPPTPS 648
V ++K+L+LGDSGVGKSSL+ R+T D F+ S T GV++K K++ E + VQVWDTAGQ++FHKIT +YY+G+ I+LVYDVA+ +L N+ YW+++I+ +A S+ V + LVGNK+DLR + + +GKEI+ KFG FFE SAK VE AF+T+ + TPS
Sbjct: 50 VRRVKILLLGDSGVGKSSLIVRWTHDTFSPSLASTVGVNFKNKKIAYKGECLQVQVWDTAGQEQFHKITTSYYKGAQGIMLVYDVADANSLANVEYWIKNIKTHA-SDSVHVVLVGNKIDLRHADPDK-------KYIDMNRGKEISHKFGVPFFETSAKDSSNVEHAFMTLVGDIADATSPTKITPS 229
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: A0A836BQA0_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BQA0_9CHLO) HSP 1 Score: 165 bits (418), Expect = 2.260e-47 Identity = 81/171 (47.37%), Postives = 115/171 (67.25%), Query Frame = 1
Query: 94 IKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQIC--LVGNKVDLRQEAGEAGENGASARMAQTRKGKEIADKFGADFFECSAKTGCRVEDAFVTV 600
IKLL++GDSGVGKS L+ RFT+D F +S + T G+D+K+K+V + +LV +Q+WDTAGQ+RF IT AYYRG+ I+LVYD+++ + N+ WM++I +A N ++C LVGNK+DL G R+ T +G+ +AD+FG FFE SAK VE+AF V
Sbjct: 11 IKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVEGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDISDEASFNNVRNWMRNIEQHASDNVNKVCGILVGNKLDL----------GDDKRVVSTARGQALADEFGFRFFETSAKDNVNVEEAFHAV 171
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: A0A5B8MUA6_9CHLO (Small rab-related GTPase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MUA6_9CHLO) HSP 1 Score: 164 bits (416), Expect = 3.160e-47 Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 1
Query: 88 HKIKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEAGEAGENGASARMAQTRKGKEIADKFGADFFECSAKTGCRVEDAFVTVT 603
H IKLL++GDSGVGK+SL+ RF+ED+F TS + T G+D+K+K+V I+++ +Q+WDTAGQ+RF IT+AYYRG+ I+LVYD + ++ N+ WM++I NA N V L+GNK D ++ R T G+ +A +FG FFE SAKTG VEDAFV ++
Sbjct: 10 HVIKLLVIGDSGVGKTSLLLRFSEDSFTTSFISTIGIDFKIKKVMIDEKCCKLQIWDTAGQERFRTITKAYYRGAMGIMLVYDTTDEKSFENVRNWMKNIEQNAAPN-VNKILIGNKSD------------SAKRAISTSMGEALAQEFGIQFFETSAKTGSYVEDAFVHIS 168
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: UPI00193A3852 (ras-related protein Rab-10-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A3852) HSP 1 Score: 163 bits (412), Expect = 1.020e-46 Identity = 75/171 (43.86%), Postives = 118/171 (69.01%), Query Frame = 1
Query: 94 IKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEAGEAGENGASARMAQTRKGKEIADKFGADFFECSAKTGCRVEDAFVTVTT 606
KLL++GDSGVGK+ ++ RF++D FNT+ + T G+D+K+K V +N + + +Q+WDTAGQ+RFH IT +YYRG+N I+LVYD+ NP++ NI+ W+++I ++A S V+ L+GNK D+ ++ RM +G++IA + G F+E SAK +E AF+T+ T
Sbjct: 10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELNGKKIKLQIWDTAGQERFHTITTSYYRGANGIMLVYDITNPKSFDNISKWLRNIEEHA-SEDVERMLLGNKCDMEEK-----------RMISKERGEQIAREHGIKFYETSAKNNINIEKAFMTLAT 168
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Match: Q2HU64_MEDTR (Putative small GTPase superfamily, P-loop containing nucleoside triphosphate hydrolase n=2 Tax=Medicago truncatula TaxID=3880 RepID=Q2HU64_MEDTR) HSP 1 Score: 163 bits (413), Expect = 1.100e-46 Identity = 87/204 (42.65%), Postives = 122/204 (59.80%), Query Frame = 1
Query: 88 HKIKLLMLGDSGVGKSSLMERFTEDNFNTSTVGTFGVDYKLKEVTINDELVMVQVWDTAGQQRFHKITQAYYRGSNAIVLVYDVANPETLGNIAYWMQSIRDNADSNRVQICLVGNKVDLRQEAGEAGENGASARMAQTRKGKEIADKFGADFFECSAKTGCRVEDAFVTVTTKAFEVYMLKPPTPSGRSKRHSIRRRKHQRQT 699
H IKLL++GDSGVGKSSL+ RF++ F TS + T G+DYK + + ++ + +M+QVWDTAGQ+RF IT AYYRG+ I+LVYDV + + NI W++SI ++ N V LVGNKVD+ + S R KG+ +A+K+G FFE SAKT V++AF ++ +K P + IR KH T
Sbjct: 14 HLIKLLLIGDSGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDE----------SKRAVPFSKGQALANKYGIKFFETSAKTNLNVDEAFFSIARD------IKQRLPDSKKTPSRIRINKHNNAT 201 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20194.5207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20194.5207.1 >prot_H-paniculata_contig20194.5207.1 ID=prot_H-paniculata_contig20194.5207.1|Name=mRNA_H-paniculata_contig20194.5207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp SSVQGFLSVGGGGNHRHGLRRGHQPPPRVHKIKLLMLGDSGVGKSSLMERback to top mRNA from alignment at H-paniculata_contig20194:925..4118- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20194.5207.1 ID=mRNA_H-paniculata_contig20194.5207.1|Name=mRNA_H-paniculata_contig20194.5207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3194bp|location=Sequence derived from alignment at H-paniculata_contig20194:925..4118- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20194:925..4118- >mRNA_H-paniculata_contig20194.5207.1 ID=mRNA_H-paniculata_contig20194.5207.1|Name=mRNA_H-paniculata_contig20194.5207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig20194:925..4118- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |