prot_H-paniculata_contig2019.5206.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2019.5206.1
Unique Nameprot_H-paniculata_contig2019.5206.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length149
Homology
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.510e-39
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 0
Query:   72 VKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            VKLTPMEQQV +LKA+HPGVLLLVECGYRYRFFGDDALAAAKVL+IY+H+DHNFQVASVPTFRL VHLRRLVDAGYKV
Sbjct:  359 VKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKV 436          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A5B7BU35_DAVIN (MutS_I domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BU35_DAVIN)

HSP 1 Score: 119 bits (297), Expect = 9.870e-30
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 0
Query:   70 SGVKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            S  K TP+EQQV +LKA++P VLL+VE GYRYRFFG+DA  AA+VL IY+H+DHNF  AS+PTFRL VH+RRLV+AGYKV
Sbjct:  164 SNPKFTPLEQQVVDLKAKYPDVLLMVEVGYRYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVNAGYKV 243          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A1J3DKT2_NOCCA (DNA mismatch repair protein MSH3 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DKT2_NOCCA)

HSP 1 Score: 116 bits (290), Expect = 9.980e-30
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 0
Query:   73 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            K TP+EQQV ELK+++P V+L+VE GYRYRFFG+DA  AA+VL IY+H+DHNF  AS+PTFRL  H+RRLV+AGYK+
Sbjct:  121 KYTPLEQQVVELKSKYPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASIPTFRLQFHVRRLVNAGYKI 197          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: Q9M512_BRANA (DNA mismatch repair protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q9M512_BRANA)

HSP 1 Score: 117 bits (292), Expect = 1.810e-29
Identity = 54/80 (67.50%), Postives = 67/80 (83.75%), Query Frame = 0
Query:   70 SGVKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            + +K TP+EQQV ELK +HP V+L+VE GYRYRFFG+DA  AA+VL IY+H+DH+F  ASVPTFRL VH+R LV+AGYKV
Sbjct:   62 TSIKYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRGLVNAGYKV 141          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A0V0HD09_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HD09_SOLCH)

HSP 1 Score: 115 bits (289), Expect = 4.950e-29
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0
Query:   73 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            K TP+EQQV ELK ++P VLL++E GYRYRFFG DA  AA+VL IY+H+DHNF  ASVPTFRL +H+RRLV AGYKV
Sbjct:  121 KYTPLEQQVVELKTKYPDVLLMIEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNIHVRRLVSAGYKV 197          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A6J1CIZ5_MOMCH (DNA mismatch repair protein MSH3 isoform X3 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CIZ5_MOMCH)

HSP 1 Score: 120 bits (301), Expect = 8.970e-29
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 0
Query:   73 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            K TP+E QV ELK RHP VLL+VE GYRYRFFG+DA  AAKVL IY+HLDHNF  AS+PTFRL VH+RRLV AGYKV
Sbjct:  129 KYTPLELQVVELKKRHPDVLLMVEVGYRYRFFGEDAEIAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKV 205          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A6J1CHA4_MOMCH (DNA mismatch repair protein n=2 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CHA4_MOMCH)

HSP 1 Score: 120 bits (301), Expect = 9.170e-29
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 0
Query:   73 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            K TP+E QV ELK RHP VLL+VE GYRYRFFG+DA  AAKVL IY+HLDHNF  AS+PTFRL VH+RRLV AGYKV
Sbjct:  129 KYTPLELQVVELKKRHPDVLLMVEVGYRYRFFGEDAEIAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKV 205          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A2P5CUR2_PARAD (DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD)

HSP 1 Score: 117 bits (294), Expect = 1.070e-28
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 0
Query:   72 VKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            +K TP+EQQV +LK +HP VLL+VE GY+YRFFG+DA  AA+VL IY+H+DHNF  ASVPTFRL VH+RRLV AG+KV
Sbjct:  124 IKYTPLEQQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFKV 201          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A5N5F0M1_9ROSA (DNA mismatch repair protein MSH3 n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F0M1_9ROSA)

HSP 1 Score: 120 bits (300), Expect = 1.220e-28
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 0
Query:   73 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            K TP+EQQV ELK RHP VLL+VE GY+YRFFG+DA  AA+VL IY+H+DHNF  ASVPTFRL VH+RRLV AGYKV
Sbjct:  124 KFTPLEQQVVELKKRHPDVLLMVEVGYKYRFFGEDAEIAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVSAGYKV 200          
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A816N0S2_BRANA ((rape) hypothetical protein n=5 Tax=Brassica TaxID=3705 RepID=A0A816N0S2_BRANA)

HSP 1 Score: 120 bits (300), Expect = 1.290e-28
Identity = 54/80 (67.50%), Postives = 69/80 (86.25%), Query Frame = 0
Query:   70 SGVKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 149
            + +K TP+EQQV ELK++HP V+L+VE GYRYRFFG+DA  AA+VL IY+H+DH+F  ASVPTFRL VH+RRLV+AGYK+
Sbjct:   95 TSIKYTPLEQQVVELKSKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRRLVNAGYKI 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYL3_ECTSI7.510e-3991.03MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A5B7BU35_DAVIN9.870e-3070.00MutS_I domain-containing protein (Fragment) n=1 Ta... [more]
A0A1J3DKT2_NOCCA9.980e-3067.53DNA mismatch repair protein MSH3 (Fragment) n=1 Ta... [more]
Q9M512_BRANA1.810e-2967.50DNA mismatch repair protein (Fragment) n=1 Tax=Bra... [more]
A0A0V0HD09_SOLCH4.950e-2970.13Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A6J1CIZ5_MOMCH8.970e-2975.32DNA mismatch repair protein MSH3 isoform X3 n=1 Ta... [more]
A0A6J1CHA4_MOMCH9.170e-2975.32DNA mismatch repair protein n=2 Tax=Momordica char... [more]
A0A2P5CUR2_PARAD1.070e-2869.23DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481... [more]
A0A5N5F0M1_9ROSA1.220e-2874.03DNA mismatch repair protein MSH3 n=1 Tax=Pyrus uss... [more]
A0A816N0S2_BRANA1.290e-2867.50(rape) hypothetical protein n=5 Tax=Brassica TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007695DNA mismatch repair protein MutS-like, N-terminalPFAMPF01624MutS_Icoord: 75..149
e-value: 3.9E-18
score: 65.8
IPR016151DNA mismatch repair protein MutS, N-terminalGENE3D3.40.1170.10coord: 64..149
e-value: 5.7E-30
score: 105.7
IPR016151DNA mismatch repair protein MutS, N-terminalSUPERFAMILY55271DNA repair protein MutS, domain Icoord: 71..149
NoneNo IPR availablePANTHERPTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERcoord: 55..149
NoneNo IPR availablePANTHERPTHR11361:SF122DNA MISMATCH REPAIR PROTEIN MSH3coord: 55..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2019contigH-paniculata_contig2019:21950..22972 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2019.5206.1mRNA_H-paniculata_contig2019.5206.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2019 21950..22972 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2019.5206.1 ID=prot_H-paniculata_contig2019.5206.1|Name=mRNA_H-paniculata_contig2019.5206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
AARTIDGVSNSAGNGGGSGDSEEVQSGATAAAAGASEGLATNIEGKTTKG
KAKGKASAKAKGKGKAGCGSGVKLTPMEQQVSELKARHPGVLLLVECGYR
YRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007695DNA_mismatch_repair_MutS-lik_N
IPR016151DNA_mismatch_repair_MutS_N