mRNA_H-paniculata_contig2019.5206.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2019.5206.1
Unique NamemRNA_H-paniculata_contig2019.5206.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.510e-39
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:  214 VKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            VKLTPMEQQV +LKA+HPGVLLLVECGYRYRFFGDDALAAAKVL+IY+H+DHNFQVASVPTFRL VHLRRLVDAGYKV
Sbjct:  359 VKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKV 436
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A5B7BU35_DAVIN (MutS_I domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BU35_DAVIN)

HSP 1 Score: 119 bits (297), Expect = 9.870e-30
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:  208 SGVKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            S  K TP+EQQV +LKA++P VLL+VE GYRYRFFG+DA  AA+VL IY+H+DHNF  AS+PTFRL VH+RRLV+AGYKV
Sbjct:  164 SNPKFTPLEQQVVDLKAKYPDVLLMVEVGYRYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVNAGYKV 243
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A1J3DKT2_NOCCA (DNA mismatch repair protein MSH3 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DKT2_NOCCA)

HSP 1 Score: 116 bits (290), Expect = 9.980e-30
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:  217 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            K TP+EQQV ELK+++P V+L+VE GYRYRFFG+DA  AA+VL IY+H+DHNF  AS+PTFRL  H+RRLV+AGYK+
Sbjct:  121 KYTPLEQQVVELKSKYPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASIPTFRLQFHVRRLVNAGYKI 197
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: Q9M512_BRANA (DNA mismatch repair protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q9M512_BRANA)

HSP 1 Score: 117 bits (292), Expect = 1.810e-29
Identity = 54/80 (67.50%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:  208 SGVKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            + +K TP+EQQV ELK +HP V+L+VE GYRYRFFG+DA  AA+VL IY+H+DH+F  ASVPTFRL VH+R LV+AGYKV
Sbjct:   62 TSIKYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRGLVNAGYKV 141
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A0V0HD09_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HD09_SOLCH)

HSP 1 Score: 115 bits (289), Expect = 4.950e-29
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  217 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            K TP+EQQV ELK ++P VLL++E GYRYRFFG DA  AA+VL IY+H+DHNF  ASVPTFRL +H+RRLV AGYKV
Sbjct:  121 KYTPLEQQVVELKTKYPDVLLMIEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNIHVRRLVSAGYKV 197
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A6J1CIZ5_MOMCH (DNA mismatch repair protein MSH3 isoform X3 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CIZ5_MOMCH)

HSP 1 Score: 120 bits (301), Expect = 8.970e-29
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  217 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            K TP+E QV ELK RHP VLL+VE GYRYRFFG+DA  AAKVL IY+HLDHNF  AS+PTFRL VH+RRLV AGYKV
Sbjct:  129 KYTPLELQVVELKKRHPDVLLMVEVGYRYRFFGEDAEIAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKV 205
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A6J1CHA4_MOMCH (DNA mismatch repair protein n=2 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CHA4_MOMCH)

HSP 1 Score: 120 bits (301), Expect = 9.170e-29
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:  217 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            K TP+E QV ELK RHP VLL+VE GYRYRFFG+DA  AAKVL IY+HLDHNF  AS+PTFRL VH+RRLV AGYKV
Sbjct:  129 KYTPLELQVVELKKRHPDVLLMVEVGYRYRFFGEDAEIAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKV 205
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A2P5CUR2_PARAD (DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD)

HSP 1 Score: 117 bits (294), Expect = 1.070e-28
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:  214 VKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            +K TP+EQQV +LK +HP VLL+VE GY+YRFFG+DA  AA+VL IY+H+DHNF  ASVPTFRL VH+RRLV AG+KV
Sbjct:  124 IKYTPLEQQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFKV 201
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BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A5N5F0M1_9ROSA (DNA mismatch repair protein MSH3 n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F0M1_9ROSA)

HSP 1 Score: 120 bits (300), Expect = 1.220e-28
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:  217 KLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            K TP+EQQV ELK RHP VLL+VE GY+YRFFG+DA  AA+VL IY+H+DHNF  ASVPTFRL VH+RRLV AGYKV
Sbjct:  124 KFTPLEQQVVELKKRHPDVLLMVEVGYKYRFFGEDAEIAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVSAGYKV 200
[Close]
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Match: A0A816N0S2_BRANA ((rape) hypothetical protein n=5 Tax=Brassica TaxID=3705 RepID=A0A816N0S2_BRANA)

HSP 1 Score: 120 bits (300), Expect = 1.290e-28
Identity = 54/80 (67.50%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:  208 SGVKLTPMEQQVSELKARHPGVLLLVECGYRYRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV 447
            + +K TP+EQQV ELK++HP V+L+VE GYRYRFFG+DA  AA+VL IY+H+DH+F  ASVPTFRL VH+RRLV+AGYK+
Sbjct:   95 TSIKYTPLEQQVVELKSKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRRLVNAGYKI 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2019.5206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYL3_ECTSI7.510e-3991.03MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A5B7BU35_DAVIN9.870e-3070.00MutS_I domain-containing protein (Fragment) n=1 Ta... [more]
A0A1J3DKT2_NOCCA9.980e-3067.53DNA mismatch repair protein MSH3 (Fragment) n=1 Ta... [more]
Q9M512_BRANA1.810e-2967.50DNA mismatch repair protein (Fragment) n=1 Tax=Bra... [more]
A0A0V0HD09_SOLCH4.950e-2970.13Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A6J1CIZ5_MOMCH8.970e-2975.32DNA mismatch repair protein MSH3 isoform X3 n=1 Ta... [more]
A0A6J1CHA4_MOMCH9.170e-2975.32DNA mismatch repair protein n=2 Tax=Momordica char... [more]
A0A2P5CUR2_PARAD1.070e-2869.23DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481... [more]
A0A5N5F0M1_9ROSA1.220e-2874.03DNA mismatch repair protein MSH3 n=1 Tax=Pyrus uss... [more]
A0A816N0S2_BRANA1.290e-2867.50(rape) hypothetical protein n=5 Tax=Brassica TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2019contigH-paniculata_contig2019:21950..22972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue4.4e-34
Seed eggNOG ortholog2880.D7FYL3
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Component of the post-replicative DNA mismatch repair system (MMR)
EggNOG OGsCOG0249@1,KOG0218@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size449
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929519.558254-CDS-H-paniculata_contig2019:21949..222881622929519.558254-CDS-H-paniculata_contig2019:21949..22288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 21950..22288 +
1691480896.2487786-CDS-H-paniculata_contig2019:21949..222881691480896.2487786-CDS-H-paniculata_contig2019:21949..22288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 21950..22288 +
1622929519.5979111-CDS-H-paniculata_contig2019:22864..229721622929519.5979111-CDS-H-paniculata_contig2019:22864..22972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 22865..22972 +
1691480896.266195-CDS-H-paniculata_contig2019:22864..229721691480896.266195-CDS-H-paniculata_contig2019:22864..22972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 22865..22972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2019.5206.1prot_H-paniculata_contig2019.5206.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2019 21950..22972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2019.5206.1

>prot_H-paniculata_contig2019.5206.1 ID=prot_H-paniculata_contig2019.5206.1|Name=mRNA_H-paniculata_contig2019.5206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
AARTIDGVSNSAGNGGGSGDSEEVQSGATAAAAGASEGLATNIEGKTTKG
KAKGKASAKAKGKGKAGCGSGVKLTPMEQQVSELKARHPGVLLLVECGYR
YRFFGDDALAAAKVLKIYSHLDHNFQVASVPTFRLPVHLRRLVDAGYKV
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mRNA from alignment at H-paniculata_contig2019:21950..22972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2019.5206.1 ID=mRNA_H-paniculata_contig2019.5206.1|Name=mRNA_H-paniculata_contig2019.5206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-paniculata_contig2019:21950..22972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCCCGCACAATAGACGGTGTTAGTAACAGCGCCGGCAACGGGGGAGG
GAGTGGTGATTCCGAAGAGGTGCAGTCAGGTGCGACCGCCGCCGCCGCTG
GTGCGTCTGAGGGATTGGCGACCAACATTGAGGGGAAGACCACCAAGGGA
AAGGCTAAGGGCAAAGCGTCGGCGAAGGCTAAGGGCAAAGGGAAGGCAGG
CTGCGGGAGCGGGGTGAAGCTCACGCCGATGGAGCAACAGGTTTCCGAGC
TTAAGGCGCGGCATCCCGGGGTGCTGCTGCTGGTGGAATGCGGATACCGA
TATCGATTCTTTGGTGACGATGCGTTGGCTGCCGCCAAGGTGTGTGCTAT
TTTGTTTTTCCAAGAGCGATTTGTTCAGATCGCTATTACTTACTTCCTTA
CTGCGTAATTTTGTGATGTGTATATATTTTTCAGTGGATGGAACCCATGT
TCATGATGCCGTGAGTGCCGGGGATGAAAGAGAATAAGCTTTTGGCGACG
TGCGTGGATGACAGCGAAAGTTAAACGTGTGCAGTTTGGAGAATTTAGTT
CGAGTTTGTATATTTCTTTACCGCTCCCACGGTGTAGCTAGTATTTATAC
TATTGTTAATGTGGAGAGTATCCTATAGAAGGGAATAAGTCCTACTAGAG
TCCGCAGAGGACAGAACACCCGTTTGTGAGTATTGTTATTTTTTTCCATT
TTGCAAGGGACTATCGTAACGTTTTATTCCGACCATGTCCTGCAGTAAAC
GTTAGCACATTGGGAGGAAGCATGTGAGCAATAGTCAAGCGGTGCGTGAA
GAGATCAAGACGCCAAAATTACGCTTCAATGCGCACGCTCCTTACATACT
CGCTCTTGATCCATTCTCCCCTCTCGATGGATGTCGCCGACTTGGCCTTC
TGTCTTTGTTTGCAGGTGTTGAAAATCTACTCGCACTTGGATCACAATTT
TCAAGTGGCGTCCGTGCCGACATTTCGCCTGCCCGTCCACCTTCGGAGAC
TTGTGGATGCAGGGTACAAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig2019:21950..22972+

>mRNA_H-paniculata_contig2019.5206.1 ID=mRNA_H-paniculata_contig2019.5206.1|Name=mRNA_H-paniculata_contig2019.5206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig2019:21950..22972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCCCGCACAATAGACGGTGTTAGTAACAGCGCCGGCAACGGGGGAGG
GAGTGGTGATTCCGAAGAGGTGCAGTCAGGTGCGACCGCCGCCGCCGCTG
GTGCGTCTGAGGGATTGGCGACCAACATTGAGGGGAAGACCACCAAGGGA
AAGGCTAAGGGCAAAGCGTCGGCGAAGGCTAAGGGCAAAGGGAAGGCAGG
CTGCGGGAGCGGGGTGAAGCTCACGCCGATGGAGCAACAGGTTTCCGAGC
TTAAGGCGCGGCATCCCGGGGTGCTGCTGCTGGTGGAATGCGGATACCGA
TATCGATTCTTTGGTGACGATGCGTTGGCTGCCGCCAAGGCCGCCCGCAC
AATAGACGGTGTTAGTAACAGCGCCGGCAACGGGGGAGGGAGTGGTGATT
CCGAAGAGGTGCAGTCAGGTGCGACCGCCGCCGCCGCTGGTGCGTCTGAG
GGATTGGCGACCAACATTGAGGGGAAGACCACCAAGGGAAAGGCTAAGGG
CAAAGCGTCGGCGAAGGCTAAGGGCAAAGGGAAGGCAGGCTGCGGGAGCG
GGGTGAAGCTCACGCCGATGGAGCAACAGGTTTCCGAGCTTAAGGCGCGG
CATCCCGGGGTGCTGCTGCTGGTGGAATGCGGATACCGATATCGATTCTT
TGGTGACGATGCGTTGGCTGCCGCCAAGGTGTTGAAAATCTACTCGCACT
TGGATCACAATTTTCAAGTGGCGTCCGTGCCGACATTTCGCCTGCCCGTC
CACCTTCGGAGACTTGTGGATGCAGGGTACAAGGTAGTGTTGAAAATCTA
CTCGCACTTGGATCACAATTTTCAAGTGGCGTCCGTGCCGACATTTCGCC
TGCCCGTCCACCTTCGGAGACTTGTGGATGCAGGGTACAAGGTA
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