mRNA_H-paniculata_contig2019.5202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2019.5202.1
Unique NamemRNA_H-paniculata_contig2019.5202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2019.5202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2019contigH-paniculata_contig2019:6983..8930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFkbM family methyltransferase
Ec32 orthologEc-26_002750.1
Exons3
Model size423
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2019.5202.1prot_H-paniculata_contig2019.5202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2019 7101..8930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929519.3693273-UTR-H-paniculata_contig2019:6982..71001622929519.3693273-UTR-H-paniculata_contig2019:6982..7100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2019 6983..7100 -
1691480896.184503-UTR-H-paniculata_contig2019:6982..71001691480896.184503-UTR-H-paniculata_contig2019:6982..7100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2019 6983..7100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929519.395371-CDS-H-paniculata_contig2019:7100..72171622929519.395371-CDS-H-paniculata_contig2019:7100..7217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 7101..7217 -
1691480896.192788-CDS-H-paniculata_contig2019:7100..72171691480896.192788-CDS-H-paniculata_contig2019:7100..7217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 7101..7217 -
1622929519.4081259-CDS-H-paniculata_contig2019:8417..85011622929519.4081259-CDS-H-paniculata_contig2019:8417..8501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 8418..8501 -
1691480896.2005088-CDS-H-paniculata_contig2019:8417..85011691480896.2005088-CDS-H-paniculata_contig2019:8417..8501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 8418..8501 -
1622929519.4253569-CDS-H-paniculata_contig2019:8828..89301622929519.4253569-CDS-H-paniculata_contig2019:8828..8930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 8829..8930 -
1691480896.213682-CDS-H-paniculata_contig2019:8828..89301691480896.213682-CDS-H-paniculata_contig2019:8828..8930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2019 8829..8930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2019.5202.1

>prot_H-paniculata_contig2019.5202.1 ID=prot_H-paniculata_contig2019.5202.1|Name=mRNA_H-paniculata_contig2019.5202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
WRREAGALSETLERVNLEKRNLARSLGEEFERAKVEELRQQRVFYESQIR
DLHACTMSIVREFGGDVPLLMLSTPEGKRDVGARKGHKNKKKKNCWPDFL
*
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mRNA from alignment at H-paniculata_contig2019:6983..8930-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2019.5202.1 ID=mRNA_H-paniculata_contig2019.5202.1|Name=mRNA_H-paniculata_contig2019.5202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1948bp|location=Sequence derived from alignment at H-paniculata_contig2019:6983..8930- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAGGCGGGAGGCCGGGGCGCTGAGCGAAACGCTGGAGCGGGTGAACTT
GGAGAAACGGAACTTGGCCCGATCTCTTGGTGAAGAGTTCGAGCGCGCGA
AGGTGCGTCTTCGATATTTTTTTTGTGGTATTTTTAGCTCTTATTTTTAT
TGGATCCGACAGTTTTATCCTCCAATCTAGTCGAATGTTTGTTCAGATAT
ACCCAAATAAATCATAACACCATTTCAGATACCACTAAAAATGATGAAAA
TTCGAATTTCAAGCTGAAGTTAGCCCGCAAACATCGTCTGACGAGCTTTG
CAGTTTTTTGGGCTTACCTAAATAAGTGCTTACGTGCCCAGGACAAGCGC
CCGTCGCCCTATTTATTGGTGTCCTGTTTGATGATTATGCCAGTGATTTC
CTGCTTATCATGCCTTCCTTCCATTGCAGGTCGAGGAACTCCGCCAACAA
CGGGTGTTTTACGAGTCGCAGATTCGAGACCTGCACGCGTGCACCATGTC
CATCGTGCGGGAGGTGAGCCGTGCTGTATGTCTGTCTGATTTGATCCTTG
ATGATTGATGATTGATGATTGTCTCTTGGTTTATTTTGTGATGATATTTT
CTCTTCTCTTTTGTCATGTTCATTCTTGTTGTCGTTTGCCCGTCTCGTCT
TGCCTTGCCTTGCCTTGCCTTGCCTTATGTCCATCAAACCAACGGTATCA
ATCAATCAATCGTGGGTGGTGTGAGACACCAACCCTCCTTCACATTCCAT
CGGAAACAATATTGAACATTTATTTGAACGTTTAAACTTGAATACAGTGA
GTGGCCCTACCTAGGGTAGAGTCAGCGCAGAGTAAAAAAACATACCTTTT
ATAGGGCCTATACCTTTTTCATATGGTCATATATATACACATATAACATA
TACAGGGCCAAGTCAATATTATTGGTCTTATGTGAGCATGTAATCTGACG
TGACAACCTGCGCGCCTTGGGGATGAGGTACAAGTATACGCCGATACCAT
TATTTTGTTGGAATATAATGCATTCTTATTTGGTCTGGTCTGCGCAACGC
TGTACCCACAGTAGTCCCCTCCTTTATAGAAACCAGCAAAAACCAGAGGC
ATGTCCCAAGTATTCCACCATAGTGCGATGTGCGATACACACGGGCCACT
GTACTACCCCACCAGTGGTAATATACTCTGCGTATACTCTCAGTAGTTGT
ACAAAATGTAGAGAAGGATCACCTACGCTCCCTACCATACTGTCTGTATG
TCATTTCATCATTTAGCCGGGCTTAAGAACGACCTCAGGCCGGCCTATTT
GTTTGCTCGGCTCGCGTGCGCTTTTATGAACGCCATCCTTTCACTATCTA
GCCCTTTAATTGTACGATCTACGTCATACGCTGCCGCCTCCTGCAACAGA
GGAACAAAAAAATGCCCTGAAAGATTTGTGTGGTATAGGGCCACCTACTG
TAGTAGAGTTGTGCCGTTTCTTCACCCTTTGAGCGCGACTTGGTCATTAT
CCATATGTGGTCCTCACTCATTACTAAGAGCTTCAACGCTGATTTGCTTG
GCCACAATGAATATATAAAACTCCCACAGTGAAGATTACAAATATTGTTT
TAGTTGCGCTGAGAAAAGTTAATGCCTTGAGTTAATTTTGTCTACATTCT
TGAACAATTGCTCCTTCCCTGACTCCGCCAACCCCCCTTTCTTCCATTCC
TACGTGCGACCAGTTCGGCGGTGATGTACCTCTGCTAATGTTGTCCACAC
CTGAAGGCAAGCGAGATGTCGGTGCACGCAAGGGTCACAAGAACAAGAAA
AAGAAAAACTGCTGGCCTGATTTTTTATAGTTTAGTTGTGGAAGTAGTTG
CAGTGGTGCGCGTTTTCTCCGCAGCTTTTATGCTTAAAAAATATGCACGT
CATTTTAGATTTTCTAGTTGACTCCTCCGGGGAAAGGAGAGATCAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig2019:6983..8930-

>mRNA_H-paniculata_contig2019.5202.1 ID=mRNA_H-paniculata_contig2019.5202.1|Name=mRNA_H-paniculata_contig2019.5202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig2019:6983..8930- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAGGCGGGAGGCCGGGGCGCTGAGCGAAACGCTGGAGCGGGTGAACTT
GGAGAAACGGAACTTGGCCCGATCTCTTGGTGAAGAGTTCGAGCGCGCGA
AGTGGAGGCGGGAGGCCGGGGCGCTGAGCGAAACGCTGGAGCGGGTGAAC
TTGGAGAAACGGAACTTGGCCCGATCTCTTGGTGAAGAGTTCGAGCGCGC
GAAGGTCGAGGAACTCCGCCAACAACGGGTGTTTTACGAGTCGCAGATTC
GAGACCTGCACGCGTGCACCATGTCCATCGTGCGGGAGGTCGAGGAACTC
CGCCAACAACGGGTGTTTTACGAGTCGCAGATTCGAGACCTGCACGCGTG
CACCATGTCCATCGTGCGGGAGTTCGGCGGTGATGTACCTCTGCTAATGT
TGTCCACACCTGAAGGCAAGCGAGATGTCGGTGCACGCAAGGGTCACAAG
AACAAGAAAAAGAAAAACTGCTGGCCTGATTTTTTATAGTTCGGCGGTGA
TGTACCTCTGCTAATGTTGTCCACACCTGAAGGCAAGCGAGATGTCGGTG
CACGCAAGGGTCACAAGAACAAGAAAAAGAAAAACTGCTGGCCTGATTTT
TTATAG
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