mRNA_H-paniculata_contig10808.520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10808.520.1
Unique NamemRNA_H-paniculata_contig10808.520.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10808.520.1 vs. uniprot
Match: D7FW92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW92_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 9.040e-10
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 3 
Query:  246 VPEMFQADVIALADVALVTGKISKQDYIQALYKAVTLDPTLVEMYRADVRQLLRGTSGAGDESPWATLGALGA--------SFEPRRQPPAPVA 503
            VPE FQ D +ALADVALVTGKISKQ Y++AL+K VTLD +LV  Y  + +Q   G    G+    A + A G         + +PR+QP A  A
Sbjct:  258 VPESFQVDALALADVALVTGKISKQAYVRALHKVVTLDSSLVSAYLGERKQ---GRQEDGEGMLEAVVRAFGPEQQGRTADNDDPRQQPRAAAA 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10808.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW92_ECTSI9.040e-1046.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10808contigH-paniculata_contig10808:884..2041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003830.1
Exons2
Model size682
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10808.520.1prot_H-paniculata_contig10808.520.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10808 884..2021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.6147673-CDS-H-paniculata_contig10808:883..12551622928785.6147673-CDS-H-paniculata_contig10808:883..1255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10808 884..1255 -
1691480619.0782027-CDS-H-paniculata_contig10808:883..12551691480619.0782027-CDS-H-paniculata_contig10808:883..1255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10808 884..1255 -
1622928785.6330848-CDS-H-paniculata_contig10808:1733..20211622928785.6330848-CDS-H-paniculata_contig10808:1733..2021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10808 1734..2021 -
1691480619.0931115-CDS-H-paniculata_contig10808:1733..20211691480619.0931115-CDS-H-paniculata_contig10808:1733..2021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10808 1734..2021 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.6477926-UTR-H-paniculata_contig10808:2021..20411622928785.6477926-UTR-H-paniculata_contig10808:2021..2041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10808 2022..2041 -
1691480619.1082346-UTR-H-paniculata_contig10808:2021..20411691480619.1082346-UTR-H-paniculata_contig10808:2021..2041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10808 2022..2041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10808.520.1

>prot_H-paniculata_contig10808.520.1 ID=prot_H-paniculata_contig10808.520.1|Name=mRNA_H-paniculata_contig10808.520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MSSHVRDRLVYMIEVVLGELRRRKGAADRSTYDIGGRVDNYGGNVYAREP
GNERGHEGSFFGDGYTGYRASAHVVVPEMFQADVIALADVALVTGKISKQ
DYIQALYKAVTLDPTLVEMYRADVRQLLRGTSGAGDESPWATLGALGASF
EPRRQPPAPVATPPRYDPSLGEVRASISSQSPLPMPSAPTFSRPRGGGLA
AAAAVAASEEEEEDRNSAQG
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mRNA from alignment at H-paniculata_contig10808:884..2041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10808.520.1 ID=mRNA_H-paniculata_contig10808.520.1|Name=mRNA_H-paniculata_contig10808.520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig10808:884..2041- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGGACGGTAGGGGCTTGGATGAGTAGTCACGTGCGGGATCGCCTGGTC
TACATGATCGAAGTTGTCTTGGGAGAGCTGCGGCGGAGGAAGGGCGCGGC
GGACCGGAGCACATACGACATCGGGGGTCGGGTTGATAACTACGGCGGTA
ACGTGTACGCACGTGAACCTGGAAATGAGCGTGGTCACGAGGGAAGTTTT
TTCGGTGATGGCTATACTGGGTATCGTGCTTCGGCGCATGTTGTTGTGCC
AGAAATGTTCCAGGCCGACGTAATCGCCTTGGCGGACGTTGCGCTAGTGA
CGGGGAAGGTGAGTATTTTCGTGCTTTATGTTTTTTTAAGGTTATTTATT
AGTTGTTATAGATGCCGGAAGGGTTCTCAGCGATTTAATTCTCCAAGAGA
CGGGTGCAGCTGTCATTACATGTGCATTTTTTTCTTAACATGTGTGTGTA
TCCGTGGTTACTTGGCCGGGTAGATATATGCTCACCCTGCTGCTATCCAT
GGTATATAGAAAGGTTTTTGCACAAATCCTTACCGGGGTAACATCGCCGT
GCTCGACACCCGTGCTCGACCGGTAACGCCTGTCTTTTCATAGTGCCCCT
TTTTTTTGCGTGCGTTTCCGTCCCTTTGCTGGCGAATACTCAAGCGAAAC
ACACAGTACGTATTAACAACTATACCTTCAACCTTGGCACCCGTCAGCGA
TAGTAGCCGCTGTGACTCCCTACACCGTTGAAACAAACACACACACACAT
CTAATCCAATCCGACCCAATTCAATCCTTACATCAGATATCCAAGCAAGA
CTATATCCAGGCGTTGTACAAGGCGGTCACCCTGGACCCGACCCTCGTGG
AGATGTATCGCGCCGACGTCCGGCAGCTCCTGCGGGGCACCAGCGGCGCA
GGTGATGAATCACCATGGGCAACGCTCGGAGCCCTGGGCGCCTCTTTCGA
GCCACGACGACAACCCCCGGCGCCTGTAGCCACACCACCGCGATACGATC
CGTCGCTTGGAGAGGTCAGGGCATCTATATCATCGCAATCGCCCCTCCCA
ATGCCGTCGGCTCCGACGTTTTCTCGGCCCCGCGGGGGAGGACTGGCGGC
GGCCGCGGCGGTGGCTGCGTCGGAAGAGGAGGAAGAGGACAGGAATTCGG
CACAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10808:884..2041-

>mRNA_H-paniculata_contig10808.520.1 ID=mRNA_H-paniculata_contig10808.520.1|Name=mRNA_H-paniculata_contig10808.520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig10808:884..2041- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTAGTCACGTGCGGGATCGCCTGGTCTACATGATCGAAGTTGTCTT
GGGAGAGCTGCGGCGGAGGAAGGGCGCGGCGGACCGGAGCACATACGACA
TCGGGGGTCGGGTTGATAACTACGGCGGTAACGTGTACGCACGTGAACCT
GGAAATGAGCGTGGTCACGAGGGAAGTTTTTTCGGTGATGGCTATACTGG
GTATCGTGCTTCGGCGCATGTTGTTGTGCCAGAAATGTTCCAGGCCGACG
TAATCGCCTTGGCGGACGTTGCGCTAGTGACGGGGAAGATGAGTAGTCAC
GTGCGGGATCGCCTGGTCTACATGATCGAAGTTGTCTTGGGAGAGCTGCG
GCGGAGGAAGGGCGCGGCGGACCGGAGCACATACGACATCGGGGGTCGGG
TTGATAACTACGGCGGTAACGTGTACGCACGTGAACCTGGAAATGAGCGT
GGTCACGAGGGAAGTTTTTTCGGTGATGGCTATACTGGGTATCGTGCTTC
GGCGCATGTTGTTGTGCCAGAAATGTTCCAGGCCGACGTAATCGCCTTGG
CGGACGTTGCGCTAGTGACGGGGAAGATATCCAAGCAAGACTATATCCAG
GCGTTGTACAAGGCGGTCACCCTGGACCCGACCCTCGTGGAGATGTATCG
CGCCGACGTCCGGCAGCTCCTGCGGGGCACCAGCGGCGCAGGTGATGAAT
CACCATGGGCAACGCTCGGAGCCCTGGGCGCCTCTTTCGAGCCACGACGA
CAACCCCCGGCGCCTGTAGCCACACCACCGCGATACGATCCGTCGCTTGG
AGAGGTCAGGGCATCTATATCATCGCAATCGCCCCTCCCAATGCCGTCGG
CTCCGACGTTTTCTCGGCCCCGCGGGGGAGGACTGGCGGCGGCCGCGGCG
GTGGCTGCGTCGGAAGAGGAGGAAGAGGACAGGAATTCGGCACAAGGGAT
ATCCAAGCAAGACTATATCCAGGCGTTGTACAAGGCGGTCACCCTGGACC
CGACCCTCGTGGAGATGTATCGCGCCGACGTCCGGCAGCTCCTGCGGGGC
ACCAGCGGCGCAGGTGATGAATCACCATGGGCAACGCTCGGAGCCCTGGG
CGCCTCTTTCGAGCCACGACGACAACCCCCGGCGCCTGTAGCCACACCAC
CGCGATACGATCCGTCGCTTGGAGAGGTCAGGGCATCTATATCATCGCAA
TCGCCCCTCCCAATGCCGTCGGCTCCGACGTTTTCTCGGCCCCGCGGGGG
AGGACTGGCGGCGGCCGCGGCGGTGGCTGCGTCGGAAGAGGAGGAAGAGG
ACAGGAATTCGGCACAAGGG
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