mRNA_H-paniculata_contig20183.5200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: D7FZQ1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ1_ECTSI) HSP 1 Score: 199 bits (507), Expect = 1.390e-59 Identity = 97/131 (74.05%), Postives = 117/131 (89.31%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKF--DGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
GGNIV AA TGSGKTLAYL+P+IQQLK +E +G + +R+T+RPRA+VLVPTRELA+QVLEVAKRLSRSCKFSSCGV+GGE+YGKQ+++LAGTVD+VV +PGRLLKH E GNFFMS+ +V+VDEVDTM
Sbjct: 55 GGNIVFAASTGSGKTLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTM 185
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A6H5KY63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY63_9PHAE) HSP 1 Score: 201 bits (510), Expect = 6.780e-59 Identity = 98/131 (74.81%), Postives = 117/131 (89.31%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKF--DGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
GGN+V AA TGSGKTLAYL+P+IQQLK +E +G + +R+T+RPRA+VLVPTRELAVQVLEVAKRLSRSCKFSSCGV+GGE+YGKQ+++LAGTVD+VV +PGRLLKH E GNFFMS+ +VIVDEVDTM
Sbjct: 172 GGNVVFAASTGSGKTLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAVQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVIVDEVDTM 302
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A836CEI1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI1_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.460e-50 Identity = 88/129 (68.22%), Postives = 106/129 (82.17%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKFDGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
GGN+V+AA TGSGKTLAYLLPVI LK+QE+ A VRK RPRA+VLVPTRELA QVL V K+++ + K SSCG+ GGE+YGKQKR+LA D+VV SPGRLLKH++QG F+SQVTHV++DEVDTM
Sbjct: 56 GGNMVVAAATGSGKTLAYLLPVINALKSQEQLSDAT-VRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRLLKHRDQGTLFLSQVTHVVIDEVDTM 183
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A7S2V6I9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6I9_9STRA) HSP 1 Score: 168 bits (426), Expect = 7.910e-49 Identity = 90/141 (63.83%), Postives = 104/141 (73.76%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKFDGADP------------VRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
GGN+V AA TGSGKTLAYLLPVIQQL+AQE A VR +RPRAVVLVPTRELA QVL V K++ R K S C V+GGE+YGKQ R LAGTVDLVVA+PGRLL H+ +G ++S+VTHV+VDEVDTM
Sbjct: 144 GGNMVFAAATGSGKTLAYLLPVIQQLRAQEAVAEACAEAAMQRGEVGLSVRAPKRPRAVVLVPTRELAAQVLAVTKQIGRYAKVSCCSVVGGEDYGKQARALAGTVDLVVATPGRLLMHRNKGGVYLSKVTHVVVDEVDTM 284
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A7S2WDP9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDP9_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.590e-48 Identity = 86/127 (67.72%), Postives = 104/127 (81.89%), Query Frame = 1
Query: 7 NIVLAAETGSGKTLAYLLPVIQQLKAQEKFDGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
N+ AA TGSGKTLAYLLP +Q LK QE+ +G + R +RPRA+VLVPTRELAVQVL VAKRLS + KFSSC V+GG ++G+Q+R LAG VD+VVASPGRLLKH+ + F+SQVTHVI+DEVDTM
Sbjct: 118 NLAFAASTGSGKTLAYLLPTVQALKVQEELEGFE--RAPKRPRALVLVPTRELAVQVLSVAKRLSHNAKFSSCAVVGGGDHGQQRRALAGVVDVVVASPGRLLKHRLNDHVFLSQVTHVIIDEVDTM 242
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A4D9D2M2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2M2_9STRA) HSP 1 Score: 164 bits (414), Expect = 4.800e-45 Identity = 82/129 (63.57%), Postives = 103/129 (79.84%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKFDGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
G ++ +A TGSGKTLAYLLP++Q+LK QE +G + R+T RPRA++LVPTREL QVLEV K LS K SSCG+ GGE++G Q+R+L G VDLVVASPGRLL+H E+G+ F SQVTHV+VDE+DTM
Sbjct: 166 GDDVAFSASTGSGKTLAYLLPIMQELKWQEAVEGKE--RQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRLLQHYEKGHVFFSQVTHVVVDEMDTM 292
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A7S2FKV5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FKV5_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.760e-41 Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKFDGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
G NI LAA TGSGKTLAYLLP++Q LK QE G D R +RPR +VLVPTRELA QVL VAK L KFSSC ++GG + G+Q+R L G D+ VAS GRLLKH+E G+ +SQVTHV++DEVDTM
Sbjct: 76 GQNIALAASTGSGKTLAYLLPIVQALKIQEDM-GYD--RLAKRPRVLVLVPTRELATQVLSVAKHLGHYSKFSSCCIVGGGDNGQQRRALTGVQDVCVASAGRLLKHQELGHMHLSQVTHVVIDEVDTM 201
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A7S4LLS1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LLS1_9EUGL) HSP 1 Score: 145 bits (365), Expect = 1.700e-38 Identity = 78/129 (60.47%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKFDGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
G ++ AA TGSGKTLAYLLPVIQ+LKAQE G + R +RPRA+V VPTREL QVL V K LS K SS V+GGE+YGKQ+R L VD+VVA+PGRL +H ++G+F+MS+V V++DEVDTM
Sbjct: 100 GESLAYAATTGSGKTLAYLLPVIQELKAQE-LAGVE--RLPKRPRAIVFVPTRELGQQVLSVLKALSHHAKISSTLVVGGEDYGKQRRALDRPVDVVVATPGRLREHWKKGHFYMSEVKEVVIDEVDTM 225
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A7R9YDC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDC6_9STRA) HSP 1 Score: 142 bits (357), Expect = 3.320e-38 Identity = 75/132 (56.82%), Postives = 95/132 (71.97%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQE---KFDGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
G N VLAA TGSGKTLAYLLPV++ LK +E +G +R+ +RPRA+VLVPTRELA+QV K L K SS VIGG++ GKQK+ L +D++VASPGRL+K ++ GN F+ V HV+VDEVDTM
Sbjct: 80 GENAVLAAGTGSGKTLAYLLPVVEHLKTEEFSRDAEGMATLRRPKRPRALVLVPTRELAMQVAGTMKELGHYVKLSSTMVIGGDQLGKQKKLLDRPIDVLVASPGRLIKMRDAGNVFLGSVKHVVVDEVDTM 211
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Match: A0A0G4F3L1_VITBC (Uncharacterized protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F3L1_VITBC) HSP 1 Score: 146 bits (368), Expect = 4.110e-38 Identity = 74/129 (57.36%), Postives = 101/129 (78.29%), Query Frame = 1
Query: 1 GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKFDGADPVRKTQRPRAVVLVPTRELAVQVLEVAKRLSRSCKFSSCGVIGGEEYGKQKRQLAGTVDLVVASPGRLLKHKEQGNFFMSQVTHVIVDEVDTM 387
GGNIV AAETGSGKTLAYLLP++Q LK++E DG +R+ +RPRA++L PTREL+ QVLEV + S+ K SSC VIGG+ + KQKR L+ +D+VV +PGR+L H ++ N +S+V++V++DEVDTM
Sbjct: 882 GGNIVFAAETGSGKTLAYLLPMMQHLKSEE-LDGRS-LRRPKRPRALILSPTRELSQQVLEVLRGSSQLAKLSSCSVIGGDSFAKQKRDLSKILDVVVGTPGRVLFHWDKSNLALSEVSYVVIDEVDTM 1008 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20183.5200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20183.5200.1 >prot_H-paniculata_contig20183.5200.1 ID=prot_H-paniculata_contig20183.5200.1|Name=mRNA_H-paniculata_contig20183.5200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp GGNIVLAAETGSGKTLAYLLPVIQQLKAQEKFDGADPVRKTQRPRAVVLVback to top mRNA from alignment at H-paniculata_contig20183:1146..3121- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20183.5200.1 ID=mRNA_H-paniculata_contig20183.5200.1|Name=mRNA_H-paniculata_contig20183.5200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1976bp|location=Sequence derived from alignment at H-paniculata_contig20183:1146..3121- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20183:1146..3121- >mRNA_H-paniculata_contig20183.5200.1 ID=mRNA_H-paniculata_contig20183.5200.1|Name=mRNA_H-paniculata_contig20183.5200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig20183:1146..3121- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |