mRNA_H-paniculata_contig20182.5199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20182.5199.1
Unique NamemRNA_H-paniculata_contig20182.5199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20182.5199.1 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.940e-33
Identity = 68/133 (51.13%), Postives = 97/133 (72.93%), Query Frame = 1 
Query:    1 NHHSAQPYASKITSQVIADVVNGRAVVFDQRRACEINHLRISPVGVVEN-KFRIVHDLSFPRNDPDSFSSVNADTDFARAPQVELGDVIKDVLLRIMYLRQKHGPSARIVISKMDVSEAYRQIPIDPAGANLF 396
            NH SA  +  +IT +V++DV+ GRA+VFD R   EI  +R+SP+GV++  KFRI+HDL+F    P   +SVN DTDF +AP+  LG V+ D+L R++YLRQ HG S  I+I ++DV EA+RQIP+DP+ A++F
Sbjct:  679 NHPSALLHRDRITDKVVSDVILGRALVFDVRFIREILGVRVSPLGVIDKPKFRIIHDLTFTSGVPIR-TSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVDPSRASVF 810
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BLAST of mRNA_H-paniculata_contig20182.5199.1 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.340e-11
Identity = 49/119 (41.18%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:   43 QVIADVVNGRAVVFDQR--RACEINHLRISPVGVVEN---KFRIVHDLSFPRNDPDSFSSVNADTDFARAPQVELGDVIKDVLLRIMYLRQKHGPSARIVISKMDVSEAYRQIPIDPAG 384
            +V+ D+  GR +V      R      L I+PV VV+    KFR+VHDLS   +      SVN  T F  AP V  G + + +L RI  LRQ   P  RI+ISKMDV  A+RQ+ +D  G
Sbjct:   64 KVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHG----ESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQA-WPRKRILISKMDVKSAFRQLALDVRG 177
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BLAST of mRNA_H-paniculata_contig20182.5199.1 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.940e-10
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:  115 LRISPVGVVEN---KFRIVHDLSFPRNDPDSFSSVNADTDFARAPQVELGDVIKDVLLRIMYLRQKHGPSARIVISKMDVSEAYRQIPIDPAG 384
            L I+PV VV+     FR+VHDLS   +      SVN  T F  AP VE G + + +L RI  LRQ   P  RI+ISKMDV  A+RQ+ +D  G
Sbjct:    7 LHINPVFVVDEGAANFRVVHDLSALLHG----ESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQA-WPRKRILISKMDVKSAFRQLALDVRG 94
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BLAST of mRNA_H-paniculata_contig20182.5199.1 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.320e-8
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:   43 QVIADVVNGRAVVFDQR--RACEINHLRISPVGVVEN---KFRIVHDLSFPRNDPDSFSSVNADTDFARAPQVELGDVIKDVLLRIMYLRQKHGPSARIVISKMDVSEAYRQIPID 375
            +V+  +  GR +V      R      L I+PV VV+    KFR+VHDLS   +     S  N  T F  AP VE G + + +L RI  LRQ   P  RI+ISKMDV  A+RQ+ +D
Sbjct:  381 KVLNYIALGRCIVMHAAVVRMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHGE---SVDNNTTVFEDAPVVECGHIFEAMLYRIWSLRQA-WPRKRILISKMDVKSAFRQLALD 492
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BLAST of mRNA_H-paniculata_contig20182.5199.1 vs. uniprot
Match: A0A8B8C950_CRAVI (uncharacterized protein LOC111117438 isoform X1 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8C950_CRAVI)

HSP 1 Score: 52.0 bits (123), Expect = 4.970e-5
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 1 
Query:    1 NHHSAQPYASKITSQVIADVVNGRAVVFDQRRACEINHLRISPVGVV----ENKFRIVHDLSFPRNDPDSFSSVNADTDFARAPQVELGDVIKDVLLRIMYLRQKHGPSARIVISKMDVSEAYRQIPI 372
            NH SA+ +   I   +    + GR  +     +        SP+GVV    E KFR++HDLSFP+N     +SVN+     R P  E   V  D +  I  L Q+ G  A  ++SK D+ +A+R IPI
Sbjct:   12 NHRSAEQHPEIINDFISKGKIEGR--IAGPFLSPPFEPFITSPLGVVPKSEEGKFRVIHDLSFPKN-----NSVNS-----RIPP-ENSQVTYDSIDTITMLVQQFGEGA--LMSKTDIQDAFRIIPI 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20182.5199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JAY4_9PHAE7.940e-3351.13C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YZC0_9STRA5.340e-1141.18Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CKZ7_9STRA1.940e-1046.24Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CCV7_9STRA6.320e-840.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8B8C950_CRAVI4.970e-534.38uncharacterized protein LOC111117438 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20182contigH-paniculata_contig20182:3837..4253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.7913725-CDS-H-paniculata_contig20182:3836..42531622929518.7913725-CDS-H-paniculata_contig20182:3836..4253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20182 3837..4253 -
1691480896.0069695-CDS-H-paniculata_contig20182:3836..42531691480896.0069695-CDS-H-paniculata_contig20182:3836..4253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20182 3837..4253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20182.5199.1prot_H-paniculata_contig20182.5199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20182 3837..4253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20182.5199.1

>prot_H-paniculata_contig20182.5199.1 ID=prot_H-paniculata_contig20182.5199.1|Name=mRNA_H-paniculata_contig20182.5199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
NHHSAQPYASKITSQVIADVVNGRAVVFDQRRACEINHLRISPVGVVENK
FRIVHDLSFPRNDPDSFSSVNADTDFARAPQVELGDVIKDVLLRIMYLRQ
KHGPSARIVISKMDVSEAYRQIPIDPAGANLFSYAIRL*
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mRNA from alignment at H-paniculata_contig20182:3837..4253-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20182.5199.1 ID=mRNA_H-paniculata_contig20182.5199.1|Name=mRNA_H-paniculata_contig20182.5199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig20182:3837..4253- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCATCATAGCGCGCAACCATACGCTTCTAAGATAACCTCTCAAGTGAT
AGCAGATGTCGTCAACGGCAGAGCCGTAGTGTTCGACCAACGACGTGCAT
GCGAAATTAACCACCTGCGCATATCCCCTGTAGGAGTGGTCGAGAACAAA
TTTCGTATTGTACACGACCTGTCTTTCCCACGAAACGACCCGGATAGTTT
CTCAAGTGTGAATGCGGATACTGATTTTGCACGTGCCCCACAAGTTGAAC
TTGGTGATGTCATTAAAGACGTCTTGTTGCGTATCATGTACTTGCGGCAA
AAGCATGGGCCAAGCGCTCGTATCGTAATCAGTAAGATGGATGTCAGCGA
AGCGTACAGGCAAATTCCTATTGATCCCGCTGGTGCTAATTTATTCAGCT
ATGCAATCCGATTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20182:3837..4253-

>mRNA_H-paniculata_contig20182.5199.1 ID=mRNA_H-paniculata_contig20182.5199.1|Name=mRNA_H-paniculata_contig20182.5199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig20182:3837..4253- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCATCATAGCGCGCAACCATACGCTTCTAAGATAACCTCTCAAGTGAT
AGCAGATGTCGTCAACGGCAGAGCCGTAGTGTTCGACCAACGACGTGCAT
GCGAAATTAACCACCTGCGCATATCCCCTGTAGGAGTGGTCGAGAACAAA
TTTCGTATTGTACACGACCTGTCTTTCCCACGAAACGACCCGGATAGTTT
CTCAAGTGTGAATGCGGATACTGATTTTGCACGTGCCCCACAAGTTGAAC
TTGGTGATGTCATTAAAGACGTCTTGTTGCGTATCATGTACTTGCGGCAA
AAGCATGGGCCAAGCGCTCGTATCGTAATCAGTAAGATGGATGTCAGCGA
AGCGTACAGGCAAATTCCTATTGATCCCGCTGGTGCTAATTTATTCAGCT
ATGCAATCCGATTATAGAACCATCATAGCGCGCAACCATACGCTTCTAAG
ATAACCTCTCAAGTGATAGCAGATGTCGTCAACGGCAGAGCCGTAGTGTT
CGACCAACGACGTGCATGCGAAATTAACCACCTGCGCATATCCCCTGTAG
GAGTGGTCGAGAACAAATTTCGTATTGTACACGACCTGTCTTTCCCACGA
AACGACCCGGATAGTTTCTCAAGTGTGAATGCGGATACTGATTTTGCACG
TGCCCCACAAGTTGAACTTGGTGATGTCATTAAAGACGTCTTGTTGCGTA
TCATGTACTTGCGGCAAAAGCATGGGCCAAGCGCTCGTATCGTAATCAGT
AAGATGGATGTCAGCGAAGCGTACAGGCAAATTCCTATTGATCCCGCTGG
TGCTAATTTATTCAGCTATGCAATCCGATTATAG
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